Wall clock time and date at job start Tue Mar 31 2020 20:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47308 * 2 1 4 4 C 1.35395 * 126.44127 * 265.02507 * 3 2 1 5 5 C 1.35564 * 107.16193 * 180.02562 * 4 3 2 6 6 N 1.33098 * 108.35027 * 0.26387 * 5 4 3 7 7 C 1.31614 * 109.09158 * 359.56574 * 6 5 4 8 8 C 1.47407 * 125.86105 * 180.17318 * 7 6 5 9 9 O 1.21611 * 120.00151 * 175.29845 * 8 7 6 10 10 N 1.34777 * 120.00395 * 355.29202 * 8 7 6 11 11 C 1.46502 * 119.99543 * 2.51098 * 10 8 7 12 12 C 1.46501 * 120.00673 * 182.50801 * 10 8 7 13 13 C 1.53000 * 109.46884 * 89.99960 * 12 10 8 14 14 H 1.09003 * 109.47165 * 294.99797 * 13 12 10 15 15 C 1.53000 * 109.46626 * 175.00365 * 13 12 10 16 16 N 1.46893 * 109.47105 * 55.00699 * 13 12 10 17 17 C 1.46905 * 110.99758 * 204.99761 * 16 13 12 18 18 C 1.50705 * 109.46711 * 179.97438 * 17 16 13 19 19 O 1.21290 * 120.00499 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99387 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99773 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99739 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99839 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00347 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99709 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47223 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46963 * 119.99820 * 25 23 21 28 28 H 1.48498 * 109.46913 * 239.99379 * 25 23 21 29 29 H 1.08996 * 109.47403 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47257 * 300.00006 * 1 2 3 31 31 H 1.08999 * 109.47218 * 59.99874 * 1 2 3 32 32 H 1.08999 * 109.47219 * 239.99570 * 2 1 3 33 33 H 1.09006 * 109.46862 * 120.00324 * 2 1 3 34 34 H 1.07998 * 126.41714 * 359.97438 * 4 3 2 35 35 H 1.08000 * 125.82075 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47287 * 83.84540 * 11 10 8 37 37 H 1.09001 * 109.46998 * 203.84681 * 11 10 8 38 38 H 1.09000 * 109.47032 * 323.84333 * 11 10 8 39 39 H 1.09000 * 109.47305 * 210.00523 * 12 10 8 40 40 H 1.09008 * 109.46624 * 330.00061 * 12 10 8 41 41 H 1.08999 * 109.47069 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47340 * 299.99833 * 15 13 12 43 43 H 1.09002 * 109.47718 * 60.00118 * 15 13 12 44 44 H 1.00894 * 111.00418 * 81.04239 * 16 13 12 45 45 H 1.09000 * 109.46882 * 299.99725 * 17 16 13 46 46 H 1.08997 * 109.47347 * 59.99844 * 17 16 13 47 47 H 0.97000 * 119.99909 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00257 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1079 -1.0851 5 6 2.7660 3.3271 -0.6391 6 7 2.6558 3.3432 0.6872 7 6 2.1997 2.1781 1.0954 8 6 1.9356 1.7961 2.4944 9 8 1.4328 0.7178 2.7458 10 7 2.2516 2.6419 3.4951 11 6 2.8064 3.9630 3.1897 12 6 2.0401 2.2405 4.8880 13 6 3.2994 1.5509 5.4168 14 1 3.4616 0.6218 4.8703 15 6 3.1254 1.2433 6.9054 16 7 4.4568 2.4364 5.2318 17 6 5.7036 1.6635 5.1532 18 6 6.8661 2.6035 4.9632 19 8 6.6749 3.7996 4.9000 20 7 8.1184 2.1151 4.8645 21 6 9.1761 2.9702 4.6922 22 1 9.0057 4.0351 4.6351 23 6 10.4671 2.4667 4.5900 24 7 10.6744 1.1709 4.6590 25 14 11.9083 3.6319 4.3559 26 1 11.4117 5.0307 4.3109 27 1 12.8572 3.4792 5.4879 28 1 12.6016 3.3120 3.0823 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3541 1.7779 -2.1132 35 1 3.1124 4.1442 -1.2547 36 1 1.9942 4.6575 2.9752 37 1 3.3768 4.3241 4.0455 38 1 3.4611 3.8902 2.3213 39 1 1.8279 3.1225 5.4922 40 1 1.1977 1.5508 4.9434 41 1 4.0227 0.7525 7.2822 42 1 2.9632 2.1723 7.4519 43 1 2.2666 0.5863 7.0428 44 1 4.5050 3.1267 5.9660 45 1 5.8396 1.0986 6.0754 46 1 5.6519 0.9751 4.3097 47 1 8.2714 1.1586 4.9155 48 1 11.5757 0.8194 4.5880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676342530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:20 Heat of formation + Delta-G solvation = 7.641493 kcal Electronic energy + Delta-G solvation = -29995.150597 eV Core-core repulsion = 25894.009496 eV Total energy + Delta-G solvation = -4101.141101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36557 -39.53922 -38.29059 -36.81708 -35.49299 -34.45076 -33.82907 -31.36062 -30.99217 -30.42761 -29.66759 -27.09084 -26.40519 -25.91709 -24.16219 -23.86508 -22.45563 -21.56716 -20.73248 -19.29570 -19.07356 -17.85861 -17.36072 -16.56365 -16.18358 -15.97383 -15.74349 -15.26118 -14.92192 -14.72433 -14.60730 -14.37804 -14.02431 -13.93214 -13.81972 -13.53157 -13.31818 -13.12642 -12.82251 -12.58332 -12.39695 -12.30203 -12.20274 -12.11759 -11.87548 -11.63656 -11.54203 -11.45517 -11.29015 -11.03345 -10.92502 -10.32284 -10.19648 -10.17950 -9.88596 -9.69558 -9.48596 -8.74007 -8.54994 -8.29390 -7.94760 -7.88090 -6.38715 -3.79244 1.36098 2.34307 2.60336 3.18280 3.21553 3.28540 3.36044 3.46130 3.95301 4.13227 4.27443 4.38250 4.44086 4.59242 4.75275 4.93180 5.01188 5.08214 5.14409 5.20027 5.27132 5.29536 5.35598 5.38463 5.45192 5.53293 5.63164 5.76757 5.78499 5.81625 5.86618 5.95660 6.04092 6.06885 6.10393 6.12573 6.31672 6.45166 6.62296 6.74384 6.95159 7.24550 7.44401 7.58267 7.72668 7.77152 8.10005 8.18923 8.64751 9.21280 9.58194 10.09606 10.79261 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.003003 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.417548 B = 9320.261725 C =10568.916328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.416 5.416 4 C -0.034 4.034 5 C -0.031 4.031 6 N -0.435 5.435 7 C 0.149 3.851 8 C 0.601 3.399 9 O -0.556 6.556 10 N -0.566 5.566 11 C 0.081 3.919 12 C 0.131 3.869 13 C 0.065 3.935 14 H 0.080 0.920 15 C -0.180 4.180 16 N -0.657 5.657 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.581 6.581 20 N -0.566 5.566 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 -3.320 -6.830 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.097 5.097 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.156 5.156 7 C -0.110 4.110 8 C 0.387 3.613 9 O -0.435 6.435 10 N -0.294 5.294 11 C -0.062 4.062 12 C 0.007 3.993 13 C -0.047 4.047 14 H 0.098 0.902 15 C -0.240 4.240 16 N -0.289 5.289 17 C -0.079 4.079 18 C 0.229 3.771 19 O -0.465 6.465 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.197 0.803 35 H 0.193 0.807 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.712 -2.642 -6.842 21.972 hybrid contribution 1.044 -1.068 0.110 1.498 sum -19.668 -3.710 -6.732 21.116 Atomic orbital electron populations 1.22051 0.93656 1.03213 1.02946 1.22060 0.96207 0.78976 1.05154 1.45240 1.45474 1.12795 1.06170 1.22872 1.07283 0.94048 0.92981 1.22540 1.06918 0.97504 0.91451 1.70477 1.14680 1.18720 1.11769 1.22661 1.09564 0.88611 0.90198 1.16524 0.78775 0.83864 0.82139 1.90753 1.46200 1.22579 1.83945 1.47230 1.60452 1.16860 1.04874 1.22275 0.98513 0.80811 1.04569 1.21575 0.96929 1.00164 0.80596 1.22027 0.91668 0.96458 0.94560 0.90209 1.22451 1.02387 1.02152 0.97003 1.60180 1.00587 1.15081 1.53033 1.21661 0.89929 0.95742 1.00608 1.19809 0.83759 0.89186 0.84363 1.90514 1.84571 1.15827 1.55579 1.41877 1.04921 1.09809 1.63650 1.19746 0.84570 0.92068 1.46210 0.87875 1.25256 0.98887 0.96388 0.97511 1.69621 1.22688 1.11455 1.50700 0.85813 0.80571 0.80303 0.77739 1.19188 1.20821 1.20785 0.90520 0.91210 0.92451 0.89161 0.87433 0.80322 0.80655 0.93815 0.89929 0.87744 0.90159 0.89626 0.92214 0.92169 0.92021 0.83241 0.94007 0.90123 0.77568 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.18 37.16 0.38 -0.94 16 2 C 0.10 0.91 6.14 -4.04 -0.02 0.88 16 3 N -0.42 -4.94 2.76 -114.59 -0.32 -5.25 16 4 C -0.03 -0.34 11.53 -16.94 -0.20 -0.54 16 5 C -0.03 -0.37 11.85 -17.96 -0.21 -0.58 16 6 N -0.43 -6.40 7.68 -11.26 -0.09 -6.48 16 7 C 0.15 2.17 7.51 -154.52 -1.16 1.01 16 8 C 0.60 9.10 7.67 -12.53 -0.10 9.00 16 9 O -0.56 -8.73 13.86 5.27 0.07 -8.65 16 10 N -0.57 -7.96 2.73 -182.85 -0.50 -8.46 16 11 C 0.08 1.16 9.11 59.85 0.55 1.71 16 12 C 0.13 1.56 5.14 -4.04 -0.02 1.54 16 13 C 0.06 0.82 2.89 -67.72 -0.20 0.63 16 14 H 0.08 1.15 7.80 -51.93 -0.40 0.74 16 15 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 16 N -0.66 -10.37 4.25 -107.99 -0.46 -10.83 16 17 C 0.05 0.96 5.97 -4.97 -0.03 0.93 16 18 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 19 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 20 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 25 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.74 7.61 -51.92 -0.40 0.34 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.11 1.18 6.76 -51.93 -0.35 0.83 16 34 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.25 7.09 -51.93 -0.37 0.88 16 38 H 0.10 1.75 5.36 -51.93 -0.28 1.47 16 39 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.09 0.99 7.39 -51.92 -0.38 0.61 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 45 H 0.04 0.69 7.43 -51.93 -0.39 0.30 16 46 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 47 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -33.55 395.91 -7.92 -41.46 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -7.33 Total: 15.80 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -1.00 Total: 14.51 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -0.69 Total: -69.85 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.55 -7.92 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676342530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.105 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds