Wall clock time and date at job start Tue Mar 31 2020 20:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47308 * 2 1 4 4 C 1.35395 * 126.44127 * 265.02507 * 3 2 1 5 5 C 1.35564 * 107.16193 * 180.02562 * 4 3 2 6 6 N 1.33098 * 108.35027 * 0.26387 * 5 4 3 7 7 C 1.31614 * 109.09158 * 359.56574 * 6 5 4 8 8 C 1.47407 * 125.86105 * 180.17318 * 7 6 5 9 9 O 1.21611 * 120.00151 * 175.29845 * 8 7 6 10 10 N 1.34777 * 120.00395 * 355.29202 * 8 7 6 11 11 C 1.46502 * 119.99543 * 2.51098 * 10 8 7 12 12 C 1.46501 * 120.00673 * 182.50801 * 10 8 7 13 13 C 1.53000 * 109.46884 * 89.99960 * 12 10 8 14 14 H 1.09003 * 109.47165 * 294.99797 * 13 12 10 15 15 C 1.53000 * 109.46626 * 175.00365 * 13 12 10 16 16 N 1.46893 * 109.47105 * 55.00699 * 13 12 10 17 17 C 1.46905 * 110.99758 * 204.99761 * 16 13 12 18 18 C 1.50705 * 109.46711 * 179.97438 * 17 16 13 19 19 O 1.21290 * 120.00499 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99387 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99773 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99739 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99839 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00347 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99709 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47223 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46963 * 119.99820 * 25 23 21 28 28 H 1.48498 * 109.46913 * 239.99379 * 25 23 21 29 29 H 1.08996 * 109.47403 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47257 * 300.00006 * 1 2 3 31 31 H 1.08999 * 109.47218 * 59.99874 * 1 2 3 32 32 H 1.08999 * 109.47219 * 239.99570 * 2 1 3 33 33 H 1.09006 * 109.46862 * 120.00324 * 2 1 3 34 34 H 1.07998 * 126.41714 * 359.97438 * 4 3 2 35 35 H 1.08000 * 125.82075 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47287 * 83.84540 * 11 10 8 37 37 H 1.09001 * 109.46998 * 203.84681 * 11 10 8 38 38 H 1.09000 * 109.47032 * 323.84333 * 11 10 8 39 39 H 1.09000 * 109.47305 * 210.00523 * 12 10 8 40 40 H 1.09008 * 109.46624 * 330.00061 * 12 10 8 41 41 H 1.08999 * 109.47069 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47340 * 299.99833 * 15 13 12 43 43 H 1.09002 * 109.47718 * 60.00118 * 15 13 12 44 44 H 1.00894 * 111.00418 * 81.04239 * 16 13 12 45 45 H 1.09000 * 109.46882 * 299.99725 * 17 16 13 46 46 H 1.08997 * 109.47347 * 59.99844 * 17 16 13 47 47 H 0.97000 * 119.99909 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00257 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1079 -1.0851 5 6 2.7660 3.3271 -0.6391 6 7 2.6558 3.3432 0.6872 7 6 2.1997 2.1781 1.0954 8 6 1.9356 1.7961 2.4944 9 8 1.4328 0.7178 2.7458 10 7 2.2516 2.6419 3.4951 11 6 2.8064 3.9630 3.1897 12 6 2.0401 2.2405 4.8880 13 6 3.2994 1.5509 5.4168 14 1 3.4616 0.6218 4.8703 15 6 3.1254 1.2433 6.9054 16 7 4.4568 2.4364 5.2318 17 6 5.7036 1.6635 5.1532 18 6 6.8661 2.6035 4.9632 19 8 6.6749 3.7996 4.9000 20 7 8.1184 2.1151 4.8645 21 6 9.1761 2.9702 4.6922 22 1 9.0057 4.0351 4.6351 23 6 10.4671 2.4667 4.5900 24 7 10.6744 1.1709 4.6590 25 14 11.9083 3.6319 4.3559 26 1 11.4117 5.0307 4.3109 27 1 12.8572 3.4792 5.4879 28 1 12.6016 3.3120 3.0823 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3541 1.7779 -2.1132 35 1 3.1124 4.1442 -1.2547 36 1 1.9942 4.6575 2.9752 37 1 3.3768 4.3241 4.0455 38 1 3.4611 3.8902 2.3213 39 1 1.8279 3.1225 5.4922 40 1 1.1977 1.5508 4.9434 41 1 4.0227 0.7525 7.2822 42 1 2.9632 2.1723 7.4519 43 1 2.2666 0.5863 7.0428 44 1 4.5050 3.1267 5.9660 45 1 5.8396 1.0986 6.0754 46 1 5.6519 0.9751 4.3097 47 1 8.2714 1.1586 4.9155 48 1 11.5757 0.8194 4.5880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676342530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:19 Heat of formation + Delta-G solvation = -14.911097 kcal Electronic energy + Delta-G solvation = -29996.128551 eV Core-core repulsion = 25894.009496 eV Total energy + Delta-G solvation = -4102.119055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.27523 -40.67131 -40.08772 -38.07963 -36.50452 -35.92423 -35.40665 -33.29167 -32.32477 -31.31212 -30.57461 -28.18984 -27.93407 -27.09590 -25.72974 -24.86232 -23.45152 -22.47309 -21.76157 -21.10180 -20.15882 -19.90824 -18.31092 -17.87532 -17.46403 -17.11990 -16.96915 -16.64065 -16.37775 -16.11410 -15.74785 -15.55275 -15.52729 -15.06943 -14.85320 -14.68829 -14.48848 -14.38042 -13.89598 -13.71883 -13.57874 -13.53008 -13.39086 -13.28587 -13.07476 -12.98279 -12.81540 -12.81379 -12.47940 -12.38194 -12.22077 -12.10967 -11.94297 -11.50704 -11.26547 -10.82060 -10.69493 -10.35669 -10.01180 -9.76885 -9.46590 -9.12045 -8.46639 -5.95252 0.38746 1.36287 1.41248 1.46124 1.55901 1.68088 2.05298 2.24930 2.29119 2.42162 2.91622 3.20519 3.27091 3.54310 3.73924 3.81771 3.92663 4.06656 4.12077 4.29133 4.32284 4.34683 4.41327 4.42653 4.50292 4.53840 4.55833 4.64700 4.74107 4.76311 4.80831 4.88618 4.94229 4.98695 5.14717 5.20007 5.24140 5.41155 5.43210 5.56448 5.81057 5.88175 5.99902 6.08644 6.32870 6.47475 6.59687 6.80485 7.12674 7.12878 7.56006 8.10932 8.71255 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011438 B = 0.003003 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.417548 B = 9320.261725 C =10568.916328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 N -0.416 5.416 4 C -0.011 4.011 5 C -0.057 4.057 6 N -0.459 5.459 7 C 0.108 3.892 8 C 0.593 3.407 9 O -0.570 6.570 10 N -0.569 5.569 11 C 0.095 3.905 12 C 0.130 3.870 13 C 0.071 3.929 14 H 0.064 0.936 15 C -0.172 4.172 16 N -0.665 5.665 17 C 0.071 3.929 18 C 0.442 3.558 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.197 0.803 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.348 0.652 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.092 -4.046 -7.737 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 N -0.097 5.097 4 C -0.150 4.150 5 C -0.210 4.210 6 N -0.182 5.182 7 C -0.150 4.150 8 C 0.380 3.620 9 O -0.450 6.450 10 N -0.297 5.297 11 C -0.048 4.048 12 C 0.007 3.993 13 C -0.040 4.040 14 H 0.082 0.918 15 C -0.231 4.231 16 N -0.297 5.297 17 C -0.062 4.062 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.114 0.886 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.241 0.759 35 H 0.214 0.786 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.167 0.833 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.271 -3.403 -7.719 22.883 hybrid contribution 1.154 -0.854 0.308 1.468 sum -20.117 -4.258 -7.411 21.858 Atomic orbital electron populations 1.21987 0.92785 1.04210 1.02009 1.22256 0.96893 0.77833 1.05766 1.45510 1.44766 1.13487 1.05917 1.23592 1.04198 0.92971 0.94213 1.23078 1.07826 0.99262 0.90817 1.70394 1.14982 1.19325 1.13489 1.22597 1.12113 0.89585 0.90667 1.16749 0.78623 0.83812 0.82792 1.90723 1.46970 1.23000 1.84338 1.47322 1.60215 1.16569 1.05600 1.22048 0.98339 0.81325 1.03101 1.21710 0.96585 1.01124 0.79833 1.22004 0.90610 0.95177 0.96204 0.91802 1.22361 1.02874 1.03068 0.94837 1.60143 1.00401 1.15614 1.53550 1.21439 0.88606 0.94452 1.01685 1.20763 0.84437 0.89583 0.82295 1.90485 1.85213 1.17756 1.56568 1.41953 1.05336 1.09653 1.64401 1.19703 0.86144 0.91541 1.48544 0.90208 1.26055 1.00820 0.98054 0.96506 1.69685 1.23671 1.12603 1.50467 0.84868 0.77281 0.77918 0.78266 1.19640 1.19542 1.19713 0.88558 0.94133 0.91247 0.85714 0.89594 0.75885 0.78646 0.92816 0.90821 0.89957 0.88222 0.88915 0.92800 0.91033 0.90245 0.83283 0.91795 0.89893 0.77266 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.18 71.98 0.73 -1.55 16 2 C 0.09 1.60 6.14 86.38 0.53 2.13 16 3 N -0.42 -9.46 2.76 -516.45 -1.42 -10.88 16 4 C -0.01 -0.20 11.53 83.52 0.96 0.77 16 5 C -0.06 -1.31 11.85 83.88 0.99 -0.31 16 6 N -0.46 -13.74 7.68 -189.53 -1.46 -15.19 16 7 C 0.11 3.20 7.51 136.28 1.02 4.22 16 8 C 0.59 18.39 7.67 86.66 0.66 19.05 16 9 O -0.57 -18.26 13.86 -4.07 -0.06 -18.32 16 10 N -0.57 -16.23 2.73 -850.66 -2.32 -18.55 16 11 C 0.09 2.81 9.11 127.77 1.16 3.97 16 12 C 0.13 3.03 5.14 86.38 0.44 3.47 16 13 C 0.07 1.76 2.89 44.92 0.13 1.89 16 14 H 0.06 1.81 7.80 -2.39 -0.02 1.79 16 15 C -0.17 -3.30 9.16 71.98 0.66 -2.64 16 16 N -0.66 -20.91 4.25 -495.57 -2.11 -23.02 16 17 C 0.07 2.56 5.97 85.56 0.51 3.07 16 18 C 0.44 21.43 7.82 87.66 0.69 22.12 16 19 O -0.61 -33.93 15.78 -3.06 -0.05 -33.98 16 20 N -0.58 -30.33 5.29 -306.98 -1.62 -31.95 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 25 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 0.85 7.61 -2.38 -0.02 0.83 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.12 1.26 8.13 -2.39 -0.02 1.24 16 33 H 0.09 1.88 6.76 -2.38 -0.02 1.86 16 34 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.28 7.09 -2.39 -0.02 2.27 16 38 H 0.08 2.88 5.36 -2.39 -0.01 2.87 16 39 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 40 H 0.09 2.06 7.39 -2.38 -0.02 2.04 16 41 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 42 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.35 11.03 8.17 -89.70 -0.73 10.30 16 45 H 0.06 2.05 7.43 -2.39 -0.02 2.03 16 46 H 0.08 2.99 8.05 -2.39 -0.02 2.97 16 47 H 0.39 19.94 7.90 -92.71 -0.73 19.21 16 48 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -74.86 395.91 2.58 -72.28 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.47 Total: 46.90 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 9.78 Total: 37.62 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -8.65 Total: -150.10 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.10 Total: -52.30 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.86 2.58 -72.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676342530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.372 kcal (2) G-P(sol) polarization free energy of solvation -74.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds