Wall clock time and date at job start Tue Mar 31 2020 19:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47345 * 239.99841 * 2 1 3 5 5 N 1.46499 * 109.47147 * 185.00048 * 4 2 1 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 2 7 7 C 1.34773 * 120.00036 * 270.27655 * 5 4 2 8 8 O 1.21283 * 120.00092 * 359.71995 * 7 5 4 9 9 C 1.50702 * 120.00430 * 179.72648 * 7 5 4 10 10 C 1.52991 * 109.47286 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.39866 * 126.04254 * 269.69091 * 11 10 9 13 13 N 1.30832 * 108.20271 * 179.82025 * 12 11 10 14 14 N 1.40085 * 108.20675 * 0.43582 * 13 12 11 15 15 H 0.96996 * 126.03976 * 179.69333 * 14 13 12 16 16 C 1.34948 * 107.92270 * 359.72415 * 14 13 12 17 17 N 1.46897 * 109.46786 * 119.99606 * 2 1 3 18 18 C 1.46903 * 111.00039 * 274.99875 * 17 2 1 19 19 C 1.50706 * 109.47091 * 180.02562 * 18 17 2 20 20 O 1.21288 * 119.99917 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99755 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99538 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00428 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99883 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00092 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99720 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47050 * 90.00294 * 26 24 22 28 28 H 1.48500 * 109.46964 * 210.00081 * 26 24 22 29 29 H 1.48500 * 109.47306 * 330.00323 * 26 24 22 30 30 H 1.09003 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47873 * 300.00422 * 1 2 3 32 32 H 1.09000 * 109.46894 * 60.00812 * 1 2 3 33 33 H 1.08994 * 109.47531 * 64.99720 * 4 2 1 34 34 H 1.09005 * 109.46544 * 304.99656 * 4 2 1 35 35 H 1.08999 * 109.46892 * 90.00398 * 6 5 4 36 36 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 37 37 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 38 38 H 1.09009 * 109.46564 * 299.99895 * 9 7 5 39 39 H 1.09001 * 109.47030 * 59.99569 * 9 7 5 40 40 H 1.08995 * 109.47398 * 299.99553 * 10 9 7 41 41 H 1.09001 * 109.47172 * 59.99982 * 10 9 7 42 42 H 1.08007 * 125.89741 * 0.02562 * 12 11 10 43 43 H 1.08005 * 126.12559 * 180.02562 * 16 14 13 44 44 H 1.00897 * 111.00529 * 38.96154 * 17 2 1 45 45 H 1.08992 * 109.47463 * 300.00162 * 18 17 2 46 46 H 1.08999 * 109.47116 * 60.00253 * 18 17 2 47 47 H 0.96996 * 119.99839 * 0.02562 * 21 19 18 48 48 H 0.97007 * 120.00088 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1258 -1.9919 -0.5610 7 6 4.2676 0.1518 -1.7105 8 8 3.7495 1.1167 -2.2317 9 6 5.7695 0.0467 -1.6447 10 6 6.3962 1.2779 -2.3020 11 6 7.8981 1.1730 -2.2356 12 6 8.7121 1.6564 -1.2060 13 7 9.9551 1.3747 -1.5013 14 7 9.9724 0.7109 -2.7348 15 1 10.7611 0.3887 -3.1984 16 6 8.6980 0.5997 -3.1644 17 7 2.0195 -0.6924 1.1995 18 6 2.0823 0.2228 2.3469 19 6 2.5883 -0.5213 3.5558 20 8 2.8694 -1.6980 3.4699 21 7 2.7284 0.1209 4.7324 22 6 3.1892 -0.5559 5.8321 23 1 3.4403 -1.6035 5.7554 24 6 3.3332 0.1060 7.0453 25 7 3.7754 -0.5425 8.0992 26 14 2.8996 1.9181 7.1778 27 1 1.4699 2.0588 7.5542 28 1 3.7496 2.5560 8.2150 29 1 3.1344 2.5803 5.8694 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.7517 -0.1585 -2.1370 34 1 1.6054 -1.7199 -1.2950 35 1 4.2823 -2.7688 -1.3094 36 1 5.0851 -1.7020 -0.1323 37 1 3.4757 -2.3722 0.2269 38 1 6.0844 -0.0092 -0.6026 39 1 6.0943 -0.8508 -2.1710 40 1 6.0813 1.3333 -3.3440 41 1 6.0714 2.1756 -1.7760 42 1 8.3727 2.1703 -0.3187 43 1 8.3744 0.1357 -4.0844 44 1 1.4495 -1.4979 1.4101 45 1 2.7587 1.0463 2.1183 46 1 1.0870 0.6165 2.5525 47 1 2.5033 1.0618 4.8012 48 1 3.8762 -0.0804 8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676439695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:16 Heat of formation + Delta-G solvation = 6.538835 kcal Electronic energy + Delta-G solvation = -29054.371292 eV Core-core repulsion = 24953.182376 eV Total energy + Delta-G solvation = -4101.188916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39403 -39.90485 -38.53874 -36.94921 -34.82902 -34.12653 -33.90906 -31.70789 -31.53880 -31.04306 -29.40587 -27.28814 -26.57276 -25.94224 -24.04047 -23.47605 -22.18289 -21.04329 -20.17053 -19.41120 -18.97379 -18.33263 -18.04654 -16.82875 -16.27049 -16.01384 -15.69584 -15.33630 -14.86147 -14.79079 -14.72495 -14.66336 -14.18126 -13.82925 -13.64453 -13.24425 -13.15110 -12.91374 -12.85315 -12.53231 -12.46734 -12.37345 -12.30306 -12.20376 -12.08227 -11.76621 -11.68778 -11.40844 -11.23488 -11.15936 -10.96091 -10.70966 -10.59267 -9.98024 -9.87647 -9.72243 -9.57279 -8.76896 -8.69930 -8.45736 -8.18829 -8.01977 -6.31575 -3.82896 1.66043 2.54076 2.67636 2.72875 3.03523 3.07121 3.15572 3.16956 3.74383 4.09255 4.13535 4.48426 4.64365 4.70191 4.86404 4.88854 4.99030 5.03683 5.13821 5.20480 5.26682 5.29089 5.36691 5.42128 5.44312 5.56486 5.59994 5.63292 5.66176 5.69323 5.75531 5.85381 5.90685 5.98814 6.05039 6.06274 6.11843 6.19238 6.42969 6.60917 7.01260 7.10181 7.42369 7.50584 7.57906 7.60644 8.14047 8.27652 8.59378 8.94533 9.42378 9.82346 10.81525 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002918 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.496484 B = 9594.249360 C =11853.413004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.081 0.919 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.084 3.916 7 C 0.512 3.488 8 O -0.554 6.554 9 C -0.133 4.133 10 C -0.024 4.024 11 C -0.233 4.233 12 C 0.058 3.942 13 N -0.297 5.297 14 N -0.481 5.481 15 H 0.438 0.562 16 C 0.058 3.942 17 N -0.658 5.658 18 C 0.049 3.951 19 C 0.451 3.549 20 O -0.566 6.566 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.184 0.816 43 H 0.175 0.825 44 H 0.348 0.652 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 2.428 -24.275 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.099 0.901 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.059 4.059 7 C 0.301 3.699 8 O -0.433 6.433 9 C -0.173 4.173 10 C -0.063 4.063 11 C -0.245 4.245 12 C -0.129 4.129 13 N -0.119 5.119 14 N -0.189 5.189 15 H 0.281 0.719 16 C -0.090 4.090 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.237 3.763 20 O -0.448 6.448 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.522 5.522 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.201 0.799 43 H 0.192 0.808 44 H 0.168 0.832 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.266 2.271 -24.137 24.616 hybrid contribution -1.682 1.233 0.246 2.100 sum 2.584 3.504 -23.891 24.285 Atomic orbital electron populations 1.22456 0.96927 1.02288 1.02409 1.22042 0.92502 0.98905 0.91270 0.90093 1.21440 0.79958 1.00793 0.97198 1.47590 1.06134 1.21625 1.57273 1.21843 0.99729 0.86707 0.97654 1.20732 0.89696 0.81985 0.77485 1.90660 1.75428 1.31539 1.45677 1.21702 0.91440 1.00445 1.03729 1.19587 0.87623 0.97427 1.01642 1.20187 0.96928 1.10107 0.97240 1.23932 0.89849 0.99340 0.99748 1.77362 1.21352 1.15740 0.97426 1.46314 1.07541 1.47490 1.17541 0.71876 1.22407 0.84778 1.01409 1.00399 1.60189 1.57464 1.08994 1.02367 1.21711 0.99828 0.95856 0.90950 1.19711 0.84655 0.88217 0.83692 1.90544 1.53992 1.15998 1.84286 1.42222 1.60089 1.11104 1.09615 1.19416 1.40302 0.97935 0.85662 0.86294 1.25033 0.97455 0.98362 0.95273 1.69617 1.45075 1.36618 1.00842 0.86688 0.79258 0.85008 0.78547 1.19690 1.20144 1.19443 0.92214 0.92355 0.91985 0.89877 0.90766 0.93826 0.91309 0.88815 0.88589 0.89374 0.90861 0.90402 0.79878 0.80799 0.83203 0.89779 0.93883 0.79720 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.16 37.16 0.34 -1.42 16 2 C 0.06 0.75 2.89 -67.72 -0.20 0.55 16 3 H 0.08 1.08 7.80 -51.93 -0.40 0.67 16 4 C 0.13 1.39 5.15 -4.04 -0.02 1.37 16 5 N -0.60 -6.82 2.73 -181.57 -0.50 -7.32 16 6 C 0.08 0.89 9.87 59.85 0.59 1.48 16 7 C 0.51 6.31 7.67 -10.99 -0.08 6.23 16 8 O -0.55 -8.40 15.56 5.55 0.09 -8.31 16 9 C -0.13 -1.29 4.23 -27.89 -0.12 -1.41 16 10 C -0.02 -0.22 4.99 -27.88 -0.14 -0.36 16 11 C -0.23 -2.16 5.35 -105.05 -0.56 -2.72 16 12 C 0.06 0.61 11.96 -17.37 -0.21 0.40 16 13 N -0.30 -3.36 12.70 30.62 0.39 -2.97 16 14 N -0.48 -3.86 7.36 30.45 0.22 -3.64 16 15 H 0.44 2.09 8.96 -182.61 -1.64 0.45 16 16 C 0.06 0.43 11.90 -17.22 -0.21 0.22 16 17 N -0.66 -9.29 4.13 -107.99 -0.45 -9.74 16 18 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 19 C 0.45 9.90 7.82 -10.98 -0.09 9.82 16 20 O -0.57 -14.44 15.78 5.55 0.09 -14.35 16 21 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 22 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 23 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 26 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.92 7.43 -51.93 -0.39 0.53 16 34 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.74 6.43 -51.93 -0.33 0.40 16 37 H 0.09 1.17 6.92 -51.93 -0.36 0.81 16 38 H 0.10 0.97 7.40 -51.92 -0.38 0.59 16 39 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.35 5.05 8.17 -39.29 -0.32 4.73 16 45 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 46 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 47 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -35.40 398.82 -7.71 -43.11 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -8.60 Total: 14.07 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.97 Total: 7.31 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.39 Total: -62.51 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.40 -7.71 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676439695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.653 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds