Wall clock time and date at job start Tue Mar 31 2020 19:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46864 * 2 1 4 4 C 1.53001 * 109.47345 * 239.99841 * 2 1 3 5 5 N 1.46499 * 109.47147 * 185.00048 * 4 2 1 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 2 7 7 C 1.34773 * 120.00036 * 270.27655 * 5 4 2 8 8 O 1.21283 * 120.00092 * 359.71995 * 7 5 4 9 9 C 1.50702 * 120.00430 * 179.72648 * 7 5 4 10 10 C 1.52991 * 109.47286 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.39866 * 126.04254 * 269.69091 * 11 10 9 13 13 N 1.30832 * 108.20271 * 179.82025 * 12 11 10 14 14 N 1.40085 * 108.20675 * 0.43582 * 13 12 11 15 15 H 0.96996 * 126.03976 * 179.69333 * 14 13 12 16 16 C 1.34948 * 107.92270 * 359.72415 * 14 13 12 17 17 N 1.46897 * 109.46786 * 119.99606 * 2 1 3 18 18 C 1.46903 * 111.00039 * 274.99875 * 17 2 1 19 19 C 1.50706 * 109.47091 * 180.02562 * 18 17 2 20 20 O 1.21288 * 119.99917 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99755 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99538 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00428 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99883 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00092 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99720 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47050 * 90.00294 * 26 24 22 28 28 H 1.48500 * 109.46964 * 210.00081 * 26 24 22 29 29 H 1.48500 * 109.47306 * 330.00323 * 26 24 22 30 30 H 1.09003 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47873 * 300.00422 * 1 2 3 32 32 H 1.09000 * 109.46894 * 60.00812 * 1 2 3 33 33 H 1.08994 * 109.47531 * 64.99720 * 4 2 1 34 34 H 1.09005 * 109.46544 * 304.99656 * 4 2 1 35 35 H 1.08999 * 109.46892 * 90.00398 * 6 5 4 36 36 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 37 37 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 38 38 H 1.09009 * 109.46564 * 299.99895 * 9 7 5 39 39 H 1.09001 * 109.47030 * 59.99569 * 9 7 5 40 40 H 1.08995 * 109.47398 * 299.99553 * 10 9 7 41 41 H 1.09001 * 109.47172 * 59.99982 * 10 9 7 42 42 H 1.08007 * 125.89741 * 0.02562 * 12 11 10 43 43 H 1.08005 * 126.12559 * 180.02562 * 16 14 13 44 44 H 1.00897 * 111.00529 * 38.96154 * 17 2 1 45 45 H 1.08992 * 109.47463 * 300.00162 * 18 17 2 46 46 H 1.08999 * 109.47116 * 60.00253 * 18 17 2 47 47 H 0.96996 * 119.99839 * 0.02562 * 21 19 18 48 48 H 0.97007 * 120.00088 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1258 -1.9919 -0.5610 7 6 4.2676 0.1518 -1.7105 8 8 3.7495 1.1167 -2.2317 9 6 5.7695 0.0467 -1.6447 10 6 6.3962 1.2779 -2.3020 11 6 7.8981 1.1730 -2.2356 12 6 8.7121 1.6564 -1.2060 13 7 9.9551 1.3747 -1.5013 14 7 9.9724 0.7109 -2.7348 15 1 10.7611 0.3887 -3.1984 16 6 8.6980 0.5997 -3.1644 17 7 2.0195 -0.6924 1.1995 18 6 2.0823 0.2228 2.3469 19 6 2.5883 -0.5213 3.5558 20 8 2.8694 -1.6980 3.4699 21 7 2.7284 0.1209 4.7324 22 6 3.1892 -0.5559 5.8321 23 1 3.4403 -1.6035 5.7554 24 6 3.3332 0.1060 7.0453 25 7 3.7754 -0.5425 8.0992 26 14 2.8996 1.9181 7.1778 27 1 1.4699 2.0588 7.5542 28 1 3.7496 2.5560 8.2150 29 1 3.1344 2.5803 5.8694 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.7517 -0.1585 -2.1370 34 1 1.6054 -1.7199 -1.2950 35 1 4.2823 -2.7688 -1.3094 36 1 5.0851 -1.7020 -0.1323 37 1 3.4757 -2.3722 0.2269 38 1 6.0844 -0.0092 -0.6026 39 1 6.0943 -0.8508 -2.1710 40 1 6.0813 1.3333 -3.3440 41 1 6.0714 2.1756 -1.7760 42 1 8.3727 2.1703 -0.3187 43 1 8.3744 0.1357 -4.0844 44 1 1.4495 -1.4979 1.4101 45 1 2.7587 1.0463 2.1183 46 1 1.0870 0.6165 2.5525 47 1 2.5033 1.0618 4.8012 48 1 3.8762 -0.0804 8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676439695.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:15 Heat of formation + Delta-G solvation = -20.421121 kcal Electronic energy + Delta-G solvation = -29055.540364 eV Core-core repulsion = 24953.182376 eV Total energy + Delta-G solvation = -4102.357988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07514 -40.86898 -40.24623 -38.08540 -36.07734 -35.68584 -34.88089 -33.73450 -32.31748 -32.10416 -30.16649 -28.23041 -27.98582 -26.88857 -25.52722 -24.48356 -22.89787 -21.98299 -21.27536 -20.84899 -20.30507 -19.84469 -18.72481 -17.84842 -17.56158 -17.19164 -16.90366 -16.57948 -16.42834 -15.98960 -15.48785 -15.44891 -15.33413 -14.97381 -14.88431 -14.58725 -14.42932 -14.16988 -13.85062 -13.71187 -13.58619 -13.35640 -13.28385 -13.21604 -13.07143 -12.97089 -12.79334 -12.58283 -12.41692 -12.37753 -11.99494 -11.98217 -11.85653 -11.49893 -11.44255 -10.69549 -10.57767 -10.42554 -10.23189 -9.62898 -9.38375 -9.08507 -8.40532 -6.00424 1.01654 1.30555 1.34377 1.43439 1.77818 1.81691 1.97443 2.11905 2.22652 2.30943 2.74229 3.16443 3.45974 3.69481 3.93876 4.02341 4.09636 4.11658 4.24518 4.30192 4.34304 4.37712 4.43418 4.48874 4.54673 4.64031 4.69792 4.74143 4.77753 4.85038 4.90512 4.96085 4.97199 5.02615 5.26390 5.28416 5.31627 5.39998 5.53652 5.70230 5.73570 5.92104 6.05149 6.46269 6.49787 6.60653 6.60942 6.74769 6.89530 7.34597 7.41569 7.97111 8.76968 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008523 B = 0.002918 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.496484 B = 9594.249360 C =11853.413004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.066 0.934 4 C 0.128 3.872 5 N -0.596 5.596 6 C 0.087 3.913 7 C 0.507 3.493 8 O -0.586 6.586 9 C -0.126 4.126 10 C -0.013 4.013 11 C -0.252 4.252 12 C 0.043 3.957 13 N -0.337 5.337 14 N -0.473 5.473 15 H 0.451 0.549 16 C 0.076 3.924 17 N -0.665 5.665 18 C 0.065 3.935 19 C 0.454 3.546 20 O -0.606 6.606 21 N -0.594 5.594 22 C -0.324 4.324 23 H 0.059 0.941 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.960 3.040 27 H -0.257 1.257 28 H -0.276 1.276 29 H -0.235 1.235 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.186 0.814 43 H 0.214 0.786 44 H 0.347 0.653 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.387 0.613 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 3.914 -26.642 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.040 4.040 3 H 0.084 0.916 4 C 0.005 3.995 5 N -0.326 5.326 6 C -0.056 4.056 7 C 0.297 3.703 8 O -0.467 6.467 9 C -0.165 4.165 10 C -0.052 4.052 11 C -0.263 4.263 12 C -0.143 4.143 13 N -0.160 5.160 14 N -0.183 5.183 15 H 0.297 0.703 16 C -0.072 4.072 17 N -0.297 5.297 18 C -0.068 4.068 19 C 0.242 3.758 20 O -0.490 6.490 21 N -0.236 5.236 22 C -0.453 4.453 23 H 0.077 0.923 24 C -0.212 4.212 25 N -0.575 5.575 26 Si 0.781 3.219 27 H -0.182 1.182 28 H -0.201 1.201 29 H -0.159 1.159 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.203 0.797 43 H 0.230 0.770 44 H 0.166 0.834 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.222 0.778 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.308 3.745 -26.532 26.998 hybrid contribution -1.357 0.602 0.893 1.732 sum 1.951 4.347 -25.639 26.078 Atomic orbital electron populations 1.22383 0.95060 1.03056 1.02910 1.22005 0.93918 0.97786 0.90268 0.91553 1.21513 0.79704 1.01688 0.96609 1.47701 1.06542 1.21608 1.56731 1.21830 0.98966 0.86957 0.97830 1.21151 0.90691 0.81510 0.76936 1.90642 1.76152 1.32703 1.47227 1.21681 0.89660 1.01541 1.03649 1.19428 0.87804 0.96517 1.01428 1.20218 0.96809 1.11504 0.97785 1.24138 0.90108 0.99617 1.00433 1.77294 1.21926 1.17465 0.99315 1.46362 1.08583 1.46635 1.16683 0.70269 1.22967 0.83967 0.99544 1.00767 1.60172 1.58297 1.08893 1.02374 1.21569 1.01131 0.95402 0.88692 1.20843 0.82414 0.87945 0.84622 1.90528 1.55037 1.18250 1.85138 1.42074 1.60752 1.11793 1.08992 1.19000 1.42131 0.96125 0.88062 0.92285 1.26042 0.96569 1.04600 0.94027 1.69792 1.46456 1.39476 1.01776 0.85428 0.79406 0.77054 0.80053 1.18170 1.20094 1.15875 0.91331 0.92657 0.90664 0.89873 0.89038 0.91300 0.91621 0.90710 0.89243 0.87204 0.90522 0.92199 0.79671 0.76960 0.83395 0.88482 0.91097 0.77761 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.16 71.98 0.66 -2.25 16 2 C 0.07 1.51 2.89 44.92 0.13 1.64 16 3 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 4 C 0.13 2.51 5.15 86.38 0.44 2.95 16 5 N -0.60 -12.73 2.73 -846.75 -2.31 -15.04 16 6 C 0.09 1.73 9.87 127.77 1.26 2.99 16 7 C 0.51 11.87 7.67 87.66 0.67 12.55 16 8 O -0.59 -17.22 15.56 -3.04 -0.05 -17.27 16 9 C -0.13 -2.26 4.23 29.85 0.13 -2.14 16 10 C -0.01 -0.23 4.99 29.85 0.15 -0.08 16 11 C -0.25 -4.36 5.35 -20.14 -0.11 -4.47 16 12 C 0.04 0.90 11.96 85.24 1.02 1.92 16 13 N -0.34 -7.52 12.70 -57.02 -0.72 -8.25 16 14 N -0.47 -6.83 7.36 -57.59 -0.42 -7.26 16 15 H 0.45 3.48 8.96 -213.33 -1.91 1.57 16 16 C 0.08 0.94 11.90 83.54 0.99 1.93 16 17 N -0.66 -17.79 4.13 -495.58 -2.05 -19.84 16 18 C 0.06 1.96 5.97 85.56 0.51 2.47 16 19 C 0.45 19.84 7.82 87.66 0.69 20.52 16 20 O -0.61 -31.73 15.78 -3.06 -0.05 -31.78 16 21 N -0.59 -27.78 5.09 -306.98 -1.56 -29.34 16 22 C -0.32 -18.77 10.16 84.04 0.85 -17.91 16 23 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 26 Si 0.96 39.14 27.74 68.60 1.90 41.05 16 27 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 28 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.24 -8.23 6.52 99.48 0.65 -7.58 16 30 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.05 0.97 7.45 -2.39 -0.02 0.95 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.67 7.43 -2.39 -0.02 1.65 16 34 H 0.09 1.47 8.07 -2.38 -0.02 1.45 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.34 6.43 -2.39 -0.02 1.33 16 37 H 0.07 1.81 6.92 -2.39 -0.02 1.79 16 38 H 0.09 1.76 7.40 -2.38 -0.02 1.74 16 39 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 40 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.35 9.62 8.17 -89.70 -0.73 8.89 16 45 H 0.10 2.77 8.05 -2.39 -0.02 2.75 16 46 H 0.07 1.81 7.44 -2.39 -0.02 1.79 16 47 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 48 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -81.54 398.82 0.67 -80.87 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: -2.23 Total: 42.95 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 7.87 Total: 19.81 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -6.77 Total: -135.62 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.10 Total: -49.05 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.05 kcal Total: -81.54 0.67 -80.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676439695.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.449 kcal (2) G-P(sol) polarization free energy of solvation -81.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds