Wall clock time and date at job start Tue Mar 31 2020 19:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47097 * 2 1 4 4 C 1.52996 * 109.47163 * 120.00579 * 2 1 3 5 5 N 1.46504 * 109.46878 * 174.99624 * 4 2 1 6 6 C 1.46500 * 120.00028 * 270.00036 * 5 4 2 7 7 C 1.34776 * 120.00102 * 89.99982 * 5 4 2 8 8 O 1.21284 * 119.99993 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00297 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47192 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.39874 * 126.04031 * 269.99886 * 11 10 9 13 13 N 1.30836 * 108.20052 * 179.73886 * 12 11 10 14 14 N 1.40084 * 108.20904 * 0.40640 * 13 12 11 15 15 H 0.97001 * 126.04219 * 179.85882 * 14 13 12 16 16 C 1.34947 * 107.92164 * 359.58781 * 14 13 12 17 17 N 1.46904 * 109.46627 * 240.00216 * 2 1 3 18 18 C 1.46903 * 110.99649 * 85.00210 * 17 2 1 19 19 C 1.50697 * 109.47271 * 179.97438 * 18 17 2 20 20 O 1.21300 * 119.99821 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00232 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99752 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00643 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99560 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00412 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99840 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47135 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47073 * 119.99541 * 26 24 22 29 29 H 1.48495 * 109.47163 * 239.99910 * 26 24 22 30 30 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46678 * 299.99413 * 1 2 3 32 32 H 1.08996 * 109.47737 * 59.99054 * 1 2 3 33 33 H 1.09003 * 109.47095 * 55.00084 * 4 2 1 34 34 H 1.08999 * 109.47629 * 294.99513 * 4 2 1 35 35 H 1.09007 * 109.47081 * 269.99884 * 6 5 4 36 36 H 1.08997 * 109.47304 * 30.00160 * 6 5 4 37 37 H 1.09003 * 109.47358 * 150.00368 * 6 5 4 38 38 H 1.08994 * 109.46963 * 59.99584 * 9 7 5 39 39 H 1.09004 * 109.46771 * 299.99960 * 9 7 5 40 40 H 1.09007 * 109.47384 * 60.00098 * 10 9 7 41 41 H 1.09002 * 109.46954 * 300.00115 * 10 9 7 42 42 H 1.08001 * 125.89534 * 0.02562 * 12 11 10 43 43 H 1.08006 * 126.12506 * 180.22115 * 16 14 13 44 44 H 1.00895 * 111.00046 * 321.05252 * 17 2 1 45 45 H 1.09006 * 109.47223 * 299.99927 * 18 17 2 46 46 H 1.08998 * 109.47291 * 59.99644 * 18 17 2 47 47 H 0.97002 * 120.00046 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99854 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.1258 -1.9920 0.5608 7 6 4.2677 0.1490 1.7154 8 8 3.7497 1.1137 2.2369 9 6 5.7696 0.0406 1.6554 10 6 6.3964 1.2691 2.3177 11 6 7.8983 1.1604 2.2584 12 6 8.7190 0.5641 3.2214 13 7 9.9596 0.6596 2.8169 14 7 9.9684 1.3288 1.5863 15 1 10.7535 1.5401 1.0572 16 6 8.6913 1.6223 1.2639 17 7 2.0196 -0.6925 -1.1995 18 6 2.0823 0.2227 -2.3469 19 6 2.5883 -0.5212 -3.5558 20 8 2.8685 -1.6983 -3.4702 21 7 2.7283 0.1210 -4.7324 22 6 3.1881 -0.5561 -5.8324 23 1 3.4384 -1.6038 -5.7560 24 6 3.3331 0.1062 -7.0453 25 7 3.0290 1.3812 -7.1383 26 14 3.9602 -0.8161 -8.5439 27 1 4.2297 -2.2299 -8.1781 28 1 2.9363 -0.7689 -9.6185 29 1 5.2136 -0.1826 -9.0263 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.6054 -1.7199 1.2949 34 1 1.7518 -0.1585 2.1370 35 1 4.2823 -2.7690 1.3092 36 1 3.4756 -2.3722 -0.2271 37 1 5.0851 -1.7022 0.1320 38 1 6.0886 -0.0142 0.6147 39 1 6.0902 -0.8587 2.1815 40 1 6.0773 1.3233 3.3586 41 1 6.0758 2.1685 1.7921 42 1 8.3856 0.1005 4.1381 43 1 8.3613 2.1345 0.3722 44 1 1.4494 -1.4978 -1.4102 45 1 1.0869 0.6165 -2.5525 46 1 2.7587 1.0463 -2.1182 47 1 2.5032 1.0620 -4.8012 48 1 3.1305 1.8435 -7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676439696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:19 Heat of formation + Delta-G solvation = -1.313532 kcal Electronic energy + Delta-G solvation = -28988.553986 eV Core-core repulsion = 24887.024565 eV Total energy + Delta-G solvation = -4101.529420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37157 -39.85653 -38.37796 -36.85948 -34.77386 -34.09158 -33.87380 -31.53077 -31.34034 -30.87426 -29.36315 -27.24116 -26.42861 -25.88232 -24.13009 -23.55027 -22.17145 -20.98056 -20.14427 -19.32528 -18.89241 -17.99980 -17.91471 -16.78156 -16.26476 -15.99569 -15.61003 -15.25407 -14.76221 -14.74143 -14.64410 -14.57664 -14.04772 -13.88542 -13.70334 -13.39406 -13.17319 -12.95289 -12.66511 -12.52177 -12.34798 -12.23767 -12.16754 -12.14449 -11.74126 -11.65850 -11.56177 -11.33023 -11.17682 -11.08027 -10.90275 -10.69953 -10.37355 -10.25258 -9.86726 -9.68085 -9.54481 -8.69596 -8.66709 -8.36010 -8.00588 -7.92939 -6.44358 -3.85260 1.69321 2.54599 2.70493 2.77249 3.13578 3.20971 3.24351 3.31156 3.88997 4.08551 4.34619 4.51102 4.71694 4.72516 4.93053 5.06433 5.07354 5.11576 5.17954 5.22167 5.31491 5.34826 5.41806 5.42319 5.49258 5.60345 5.65300 5.68061 5.74880 5.79166 5.80308 5.94943 6.05683 6.08626 6.10932 6.14676 6.21942 6.26511 6.44362 6.65381 7.04214 7.21460 7.43189 7.52494 7.55377 7.68352 8.03967 8.32052 8.58516 9.15264 9.52194 10.03187 10.73432 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.002819 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.757290 B = 9929.363256 C =12457.484305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.080 0.920 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.084 3.916 7 C 0.512 3.488 8 O -0.554 6.554 9 C -0.133 4.133 10 C -0.024 4.024 11 C -0.235 4.235 12 C 0.055 3.945 13 N -0.300 5.300 14 N -0.479 5.479 15 H 0.439 0.561 16 C 0.063 3.937 17 N -0.658 5.658 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.584 6.584 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.182 0.818 43 H 0.178 0.822 44 H 0.347 0.653 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -0.065 18.277 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.099 0.901 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.059 4.059 7 C 0.301 3.699 8 O -0.433 6.433 9 C -0.173 4.173 10 C -0.063 4.063 11 C -0.247 4.247 12 C -0.132 4.132 13 N -0.123 5.123 14 N -0.187 5.187 15 H 0.283 0.717 16 C -0.084 4.084 17 N -0.290 5.290 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.469 6.469 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.199 0.801 43 H 0.195 0.805 44 H 0.166 0.834 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.000 -0.442 18.866 19.802 hybrid contribution -1.257 0.591 -1.840 2.305 sum 4.743 0.149 17.026 17.675 Atomic orbital electron populations 1.22456 0.96981 1.02205 1.02419 1.22036 0.92471 0.98897 0.91307 0.90126 1.21445 0.79923 1.00762 0.97266 1.47579 1.06153 1.21733 1.57136 1.21830 0.99651 0.86742 0.97643 1.20725 0.89683 0.82009 0.77491 1.90662 1.75419 1.31495 1.45694 1.21698 0.91472 1.00676 1.03444 1.19586 0.87601 0.97227 1.01863 1.20176 0.96949 1.10481 0.97089 1.23845 0.89921 0.99343 1.00047 1.77309 1.21429 1.16982 0.96541 1.46311 1.07644 1.46649 1.18101 0.71747 1.22515 0.84636 1.00847 1.00453 1.60206 1.57302 1.09019 1.02457 1.21671 0.99778 0.95714 0.90882 1.19820 0.85033 0.88198 0.84148 1.90507 1.55460 1.16221 1.84695 1.41886 1.57746 1.12494 1.07986 1.19736 1.39879 0.96422 0.86742 0.87896 1.25265 0.97695 0.95764 0.99259 1.69620 1.48703 1.08869 1.27094 0.85817 0.78259 0.79624 0.80740 1.19217 1.20772 1.20761 0.92296 0.92034 0.92305 0.90824 0.89889 0.93835 0.88839 0.91414 0.88828 0.89210 0.90565 0.90674 0.80099 0.80538 0.83383 0.94003 0.89963 0.77504 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.16 37.16 0.34 -1.54 16 2 C 0.06 0.79 2.89 -67.71 -0.20 0.60 16 3 H 0.08 1.14 7.80 -51.93 -0.40 0.73 16 4 C 0.13 1.47 5.15 -4.04 -0.02 1.45 16 5 N -0.59 -7.11 2.73 -181.57 -0.50 -7.60 16 6 C 0.08 0.93 9.86 59.85 0.59 1.52 16 7 C 0.51 6.56 7.67 -10.99 -0.08 6.47 16 8 O -0.55 -8.68 15.56 5.55 0.09 -8.60 16 9 C -0.13 -1.33 4.23 -27.88 -0.12 -1.45 16 10 C -0.02 -0.23 4.99 -27.88 -0.14 -0.37 16 11 C -0.24 -2.24 5.35 -105.05 -0.56 -2.80 16 12 C 0.06 0.54 11.96 -17.36 -0.21 0.33 16 13 N -0.30 -3.29 12.70 30.63 0.39 -2.90 16 14 N -0.48 -4.15 7.36 30.45 0.22 -3.93 16 15 H 0.44 2.49 8.96 -182.61 -1.64 0.86 16 16 C 0.06 0.54 11.90 -17.22 -0.21 0.34 16 17 N -0.66 -9.73 4.13 -107.99 -0.45 -10.18 16 18 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 19 C 0.44 10.04 7.82 -10.99 -0.09 9.95 16 20 O -0.58 -15.01 15.78 5.54 0.09 -14.92 16 21 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 22 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 26 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 37 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 38 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 39 H 0.09 0.78 8.11 -51.93 -0.42 0.35 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.35 5.26 8.17 -39.29 -0.32 4.94 16 45 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 46 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -33.73 401.95 -8.06 -41.79 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -8.65 Total: 14.68 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.96 Total: 7.52 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.34 Total: -62.23 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.73 -8.06 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676439696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.480 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds