Wall clock time and date at job start Tue Mar 31 2020 19:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47097 * 2 1 4 4 C 1.52996 * 109.47163 * 120.00579 * 2 1 3 5 5 N 1.46504 * 109.46878 * 174.99624 * 4 2 1 6 6 C 1.46500 * 120.00028 * 270.00036 * 5 4 2 7 7 C 1.34776 * 120.00102 * 89.99982 * 5 4 2 8 8 O 1.21284 * 119.99993 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00297 * 179.97438 * 7 5 4 10 10 C 1.52998 * 109.47192 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.39874 * 126.04031 * 269.99886 * 11 10 9 13 13 N 1.30836 * 108.20052 * 179.73886 * 12 11 10 14 14 N 1.40084 * 108.20904 * 0.40640 * 13 12 11 15 15 H 0.97001 * 126.04219 * 179.85882 * 14 13 12 16 16 C 1.34947 * 107.92164 * 359.58781 * 14 13 12 17 17 N 1.46904 * 109.46627 * 240.00216 * 2 1 3 18 18 C 1.46903 * 110.99649 * 85.00210 * 17 2 1 19 19 C 1.50697 * 109.47271 * 179.97438 * 18 17 2 20 20 O 1.21300 * 119.99821 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00232 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99752 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00643 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99560 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00412 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99840 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47135 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47073 * 119.99541 * 26 24 22 29 29 H 1.48495 * 109.47163 * 239.99910 * 26 24 22 30 30 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46678 * 299.99413 * 1 2 3 32 32 H 1.08996 * 109.47737 * 59.99054 * 1 2 3 33 33 H 1.09003 * 109.47095 * 55.00084 * 4 2 1 34 34 H 1.08999 * 109.47629 * 294.99513 * 4 2 1 35 35 H 1.09007 * 109.47081 * 269.99884 * 6 5 4 36 36 H 1.08997 * 109.47304 * 30.00160 * 6 5 4 37 37 H 1.09003 * 109.47358 * 150.00368 * 6 5 4 38 38 H 1.08994 * 109.46963 * 59.99584 * 9 7 5 39 39 H 1.09004 * 109.46771 * 299.99960 * 9 7 5 40 40 H 1.09007 * 109.47384 * 60.00098 * 10 9 7 41 41 H 1.09002 * 109.46954 * 300.00115 * 10 9 7 42 42 H 1.08001 * 125.89534 * 0.02562 * 12 11 10 43 43 H 1.08006 * 126.12506 * 180.22115 * 16 14 13 44 44 H 1.00895 * 111.00046 * 321.05252 * 17 2 1 45 45 H 1.09006 * 109.47223 * 299.99927 * 18 17 2 46 46 H 1.08998 * 109.47291 * 59.99644 * 18 17 2 47 47 H 0.97002 * 120.00046 * 359.97438 * 21 19 18 48 48 H 0.96995 * 119.99854 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.1258 -1.9920 0.5608 7 6 4.2677 0.1490 1.7154 8 8 3.7497 1.1137 2.2369 9 6 5.7696 0.0406 1.6554 10 6 6.3964 1.2691 2.3177 11 6 7.8983 1.1604 2.2584 12 6 8.7190 0.5641 3.2214 13 7 9.9596 0.6596 2.8169 14 7 9.9684 1.3288 1.5863 15 1 10.7535 1.5401 1.0572 16 6 8.6913 1.6223 1.2639 17 7 2.0196 -0.6925 -1.1995 18 6 2.0823 0.2227 -2.3469 19 6 2.5883 -0.5212 -3.5558 20 8 2.8685 -1.6983 -3.4702 21 7 2.7283 0.1210 -4.7324 22 6 3.1881 -0.5561 -5.8324 23 1 3.4384 -1.6038 -5.7560 24 6 3.3331 0.1062 -7.0453 25 7 3.0290 1.3812 -7.1383 26 14 3.9602 -0.8161 -8.5439 27 1 4.2297 -2.2299 -8.1781 28 1 2.9363 -0.7689 -9.6185 29 1 5.2136 -0.1826 -9.0263 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.6054 -1.7199 1.2949 34 1 1.7518 -0.1585 2.1370 35 1 4.2823 -2.7690 1.3092 36 1 3.4756 -2.3722 -0.2271 37 1 5.0851 -1.7022 0.1320 38 1 6.0886 -0.0142 0.6147 39 1 6.0902 -0.8587 2.1815 40 1 6.0773 1.3233 3.3586 41 1 6.0758 2.1685 1.7921 42 1 8.3856 0.1005 4.1381 43 1 8.3613 2.1345 0.3722 44 1 1.4494 -1.4978 -1.4102 45 1 1.0869 0.6165 -2.5525 46 1 2.7587 1.0463 -2.1182 47 1 2.5032 1.0620 -4.8012 48 1 3.1305 1.8435 -7.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676439696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:18 Heat of formation + Delta-G solvation = -25.381585 kcal Electronic energy + Delta-G solvation = -28989.597655 eV Core-core repulsion = 24887.024565 eV Total energy + Delta-G solvation = -4102.573090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07596 -40.86113 -40.11052 -38.06489 -36.04966 -35.66202 -34.88313 -33.26812 -32.28724 -32.06497 -30.16505 -28.17535 -27.91884 -26.89591 -25.70946 -24.51135 -22.88241 -21.98752 -21.10466 -20.85098 -19.95095 -19.82586 -18.72607 -17.84650 -17.59788 -17.14076 -16.82032 -16.50204 -16.35364 -16.05404 -15.55493 -15.46171 -15.38232 -15.13003 -14.85514 -14.56275 -14.28395 -13.84810 -13.76823 -13.53966 -13.49566 -13.38665 -13.27914 -13.16732 -13.03228 -12.96467 -12.78220 -12.62035 -12.42709 -12.35208 -12.10173 -11.98123 -11.87036 -11.49287 -11.45834 -10.70057 -10.57870 -10.33537 -9.99734 -9.62421 -9.39235 -9.08538 -8.45415 -5.93842 1.00131 1.37206 1.42704 1.56565 1.77774 1.82779 2.07181 2.09663 2.28492 2.32032 2.94301 3.22186 3.57857 3.69480 3.94765 3.99568 4.10252 4.17228 4.31009 4.32435 4.34947 4.37330 4.46214 4.53081 4.58252 4.59811 4.68296 4.73721 4.77121 4.85236 4.92433 4.93843 4.97235 5.02253 5.24626 5.28537 5.31260 5.39436 5.42592 5.71033 5.75040 5.90353 6.10818 6.45740 6.47854 6.60707 6.61233 6.74456 7.14125 7.34422 7.58225 8.12514 8.72339 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.002819 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.757290 B = 9929.363256 C =12457.484305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.062 0.938 4 C 0.129 3.871 5 N -0.596 5.596 6 C 0.087 3.913 7 C 0.506 3.494 8 O -0.587 6.587 9 C -0.125 4.125 10 C -0.013 4.013 11 C -0.249 4.249 12 C 0.051 3.949 13 N -0.333 5.333 14 N -0.475 5.475 15 H 0.450 0.550 16 C 0.066 3.934 17 N -0.660 5.660 18 C 0.068 3.932 19 C 0.444 3.556 20 O -0.615 6.615 21 N -0.576 5.576 22 C -0.328 4.328 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.200 0.800 43 H 0.199 0.801 44 H 0.346 0.654 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.394 0.606 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -0.418 18.480 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.040 4.040 3 H 0.081 0.919 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.056 4.056 7 C 0.296 3.704 8 O -0.469 6.469 9 C -0.164 4.164 10 C -0.053 4.053 11 C -0.261 4.261 12 C -0.135 4.135 13 N -0.156 5.156 14 N -0.184 5.184 15 H 0.296 0.704 16 C -0.082 4.082 17 N -0.292 5.292 18 C -0.064 4.064 19 C 0.231 3.769 20 O -0.501 6.501 21 N -0.214 5.214 22 C -0.458 4.458 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.198 1.198 29 H -0.198 1.198 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.216 0.784 44 H 0.165 0.835 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.971 -0.794 19.078 20.007 hybrid contribution -1.268 0.696 -1.855 2.353 sum 4.703 -0.098 17.223 17.854 Atomic orbital electron populations 1.22381 0.95169 1.03081 1.02756 1.22001 0.93865 0.97689 0.90464 0.91921 1.21502 0.79772 1.01689 0.96476 1.47701 1.06509 1.21782 1.56616 1.21836 0.99004 0.86889 0.97827 1.21180 0.90753 0.81525 0.76921 1.90643 1.76181 1.32748 1.47282 1.21674 0.89555 1.01559 1.03661 1.19434 0.87870 0.96593 1.01364 1.20205 0.96722 1.11470 0.97691 1.24209 0.89590 0.98997 1.00681 1.77262 1.22225 1.18334 0.97757 1.46361 1.08266 1.46121 1.17689 0.70429 1.22907 0.84477 1.00020 1.00811 1.60193 1.58031 1.08767 1.02226 1.21471 1.00419 0.95330 0.89205 1.20735 0.83289 0.87991 0.84865 1.90481 1.56372 1.17864 1.85376 1.41965 1.58482 1.12584 1.08323 1.19694 1.41779 0.95936 0.88375 0.90086 1.26035 0.97374 0.96571 1.01433 1.69685 1.48913 1.09783 1.28029 0.84886 0.78081 0.78160 0.77321 1.19553 1.19818 1.19768 0.91150 0.90654 0.93001 0.88903 0.89962 0.91359 0.90607 0.91496 0.88829 0.87458 0.90958 0.91864 0.78283 0.78402 0.83471 0.92252 0.89344 0.77245 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.16 71.98 0.66 -2.63 16 2 C 0.07 1.65 2.89 44.91 0.13 1.78 16 3 H 0.06 1.71 7.80 -2.39 -0.02 1.69 16 4 C 0.13 2.72 5.15 86.38 0.44 3.16 16 5 N -0.60 -13.47 2.73 -846.75 -2.31 -15.78 16 6 C 0.09 1.78 9.86 127.77 1.26 3.04 16 7 C 0.51 12.53 7.67 87.66 0.67 13.20 16 8 O -0.59 -18.21 15.56 -3.04 -0.05 -18.26 16 9 C -0.12 -2.36 4.23 29.85 0.13 -2.24 16 10 C -0.01 -0.26 4.99 29.85 0.15 -0.11 16 11 C -0.25 -4.50 5.35 -20.14 -0.11 -4.61 16 12 C 0.05 0.95 11.96 85.24 1.02 1.96 16 13 N -0.33 -7.02 12.70 -57.02 -0.72 -7.75 16 14 N -0.48 -7.75 7.36 -57.59 -0.42 -8.17 16 15 H 0.45 4.66 8.96 -213.33 -1.91 2.75 16 16 C 0.07 1.05 11.90 83.54 0.99 2.05 16 17 N -0.66 -18.85 4.13 -495.57 -2.05 -20.90 16 18 C 0.07 2.29 5.96 85.56 0.51 2.80 16 19 C 0.44 20.20 7.82 87.66 0.69 20.89 16 20 O -0.61 -31.88 15.78 -3.09 -0.05 -31.92 16 21 N -0.58 -28.92 5.29 -306.98 -1.62 -30.54 16 22 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -49.40 13.05 21.67 0.28 -49.12 16 26 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 30 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 33 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.08 1.79 7.42 -2.39 -0.02 1.77 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.86 6.92 -2.39 -0.02 1.85 16 37 H 0.07 1.38 6.44 -2.39 -0.02 1.36 16 38 H 0.09 1.80 7.40 -2.39 -0.02 1.78 16 39 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 40 H 0.07 1.42 8.10 -2.38 -0.02 1.40 16 41 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 42 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.35 10.12 8.17 -89.70 -0.73 9.39 16 45 H 0.06 1.81 7.44 -2.38 -0.02 1.79 16 46 H 0.09 2.89 8.05 -2.39 -0.02 2.88 16 47 H 0.39 19.09 7.90 -92.71 -0.73 18.36 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -72.35 401.95 0.54 -71.81 By element: Atomic # 1 Polarization: 47.21 SS G_CDS: -2.37 Total: 44.84 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 7.82 Total: 21.61 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -6.85 Total: -132.26 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.10 Total: -50.18 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -72.35 0.54 -71.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676439696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.428 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds