Wall clock time and date at job start Tue Mar 31 2020 20:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47256 * 2 1 4 4 N 1.28717 * 126.03715 * 276.93590 * 3 2 1 5 5 N 1.28508 * 110.63939 * 180.29567 * 4 3 2 6 6 C 1.33322 * 109.43892 * 359.71298 * 5 4 3 7 7 C 1.37007 * 106.37093 * 0.02562 * 6 5 4 8 8 C 1.47236 * 127.18691 * 180.02562 * 7 6 5 9 9 O 1.21615 * 120.00218 * 152.41406 * 8 7 6 10 10 N 1.34778 * 119.99959 * 332.40059 * 8 7 6 11 11 C 1.46922 * 120.62942 * 351.54723 * 10 8 7 12 12 C 1.53194 * 108.77273 * 233.58073 * 11 10 8 13 13 C 1.53034 * 109.31476 * 305.36341 * 12 11 10 14 14 C 1.53042 * 109.53884 * 61.36639 * 13 12 11 15 15 H 1.08998 * 109.52575 * 58.60048 * 14 13 12 16 16 N 1.46496 * 109.50105 * 178.68610 * 14 13 12 17 17 C 1.36935 * 119.99959 * 59.83691 * 16 14 13 18 18 H 1.08002 * 120.00117 * 36.29034 * 17 16 14 19 19 C 1.38813 * 119.99876 * 216.28189 * 17 16 14 20 20 N 1.31621 * 119.99706 * 21.87906 * 19 17 16 21 21 Si 1.86793 * 120.00222 * 201.87210 * 19 17 16 22 22 H 1.48503 * 109.47319 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47011 * 120.00446 * 21 19 17 24 24 H 1.48498 * 109.47405 * 240.00270 * 21 19 17 25 25 C 1.46505 * 119.99792 * 239.83698 * 16 14 13 26 26 C 1.53003 * 109.47115 * 271.00469 * 25 16 14 27 27 O 1.42899 * 109.47285 * 65.00013 * 26 25 16 28 28 C 1.46926 * 120.62942 * 171.51733 * 10 8 7 29 29 H 1.09003 * 109.47425 * 65.03740 * 1 2 3 30 30 H 1.09001 * 109.47039 * 185.03274 * 1 2 3 31 31 H 1.08998 * 109.47108 * 305.03550 * 1 2 3 32 32 H 1.09004 * 109.47072 * 240.00070 * 2 1 3 33 33 H 1.09001 * 109.47644 * 120.00121 * 2 1 3 34 34 H 1.07999 * 126.81317 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.59181 * 353.36727 * 11 10 8 36 36 H 1.09001 * 109.58987 * 113.65292 * 11 10 8 37 37 H 1.09004 * 109.49764 * 65.31798 * 12 11 10 38 38 H 1.09004 * 109.49667 * 185.38002 * 12 11 10 39 39 H 1.09000 * 109.46084 * 301.34991 * 13 12 11 40 40 H 1.08995 * 109.46649 * 181.38510 * 13 12 11 41 41 H 0.97002 * 119.99732 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.47080 * 151.00422 * 25 16 14 43 43 H 1.09000 * 109.47265 * 31.00174 * 25 16 14 44 44 H 1.09000 * 109.46785 * 185.00373 * 26 25 16 45 45 H 1.09004 * 109.46812 * 305.00010 * 26 25 16 46 46 H 0.96698 * 113.99674 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.58398 * 6.62879 * 28 10 8 48 48 H 1.09003 * 109.70312 * 246.27660 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1523 2.1370 -1.0332 5 7 2.6099 3.2893 -0.6953 6 6 2.7909 3.3250 0.6251 7 6 2.4104 2.0976 1.1003 8 6 2.4244 1.6420 2.5004 9 8 1.6423 0.7870 2.8695 10 7 3.3043 2.1723 3.3728 11 6 4.3737 3.0658 2.9076 12 6 5.7177 2.5298 3.4107 13 6 5.6578 2.3593 4.9304 14 6 4.5688 1.3457 5.2891 15 1 4.7842 0.3929 4.8055 16 7 4.5333 1.1596 6.7418 17 6 4.2795 2.2259 7.5626 18 1 3.5775 2.9876 7.2569 19 6 4.9242 2.3276 8.7877 20 7 6.0555 1.6863 8.9912 21 14 4.1865 3.3747 10.1473 22 1 2.9205 3.9864 9.6695 23 1 3.9082 2.5235 11.3320 24 1 5.1440 4.4462 10.5218 25 6 4.7694 -0.1673 7.3163 26 6 3.4419 -0.9206 7.4224 27 8 2.9254 -1.1625 6.1122 28 6 3.2117 1.8683 4.8073 29 1 -0.3634 0.4337 -0.9317 30 1 -0.3633 -1.0237 0.0902 31 1 -0.3633 0.5900 0.8414 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.1642 4.1562 1.2049 35 1 4.3770 3.0956 1.8180 36 1 4.2082 4.0692 3.3000 37 1 5.9227 1.5661 2.9443 38 1 6.5093 3.2339 3.1541 39 1 5.4283 3.3184 5.3946 40 1 6.6210 2.0013 5.2939 41 1 6.5062 1.7577 9.8472 42 1 5.2071 -0.0608 8.3088 43 1 5.4530 -0.7242 6.6756 44 1 3.6034 -1.8713 7.9306 45 1 2.7289 -0.3221 7.9894 46 1 2.0830 -1.6372 6.1031 47 1 2.4481 1.1078 4.9711 48 1 2.9515 2.7720 5.3585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689205057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:06 Heat of formation + Delta-G solvation = 46.481600 kcal Electronic energy + Delta-G solvation = -31203.041004 eV Core-core repulsion = 27103.584136 eV Total energy + Delta-G solvation = -4099.456868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.42837 -39.81520 -37.55548 -36.35687 -35.55399 -34.72829 -32.59483 -31.53081 -31.21132 -30.94959 -29.56917 -27.23642 -25.82080 -24.67914 -24.32332 -23.21120 -22.52644 -21.80478 -20.74223 -19.88676 -19.13048 -17.39985 -17.11267 -16.81963 -16.58015 -16.25837 -15.80287 -15.11939 -15.02400 -14.57773 -14.40964 -14.27315 -13.96206 -13.76251 -13.53179 -13.20075 -13.05359 -12.98897 -12.69265 -12.45221 -12.44580 -12.22305 -11.87273 -11.74198 -11.50156 -11.22271 -11.14407 -10.91642 -10.77410 -10.61612 -10.40321 -10.31388 -10.25494 -10.09014 -9.98641 -9.86489 -9.61251 -9.40940 -9.14740 -8.62352 -8.35296 -6.64024 -5.87573 -3.42962 0.92844 1.95475 2.21990 2.95989 3.13038 3.28956 3.39237 3.41347 4.15879 4.28251 4.40915 4.56640 4.62034 4.82657 4.91863 4.97274 5.15702 5.16288 5.23606 5.26473 5.30479 5.39701 5.46912 5.59726 5.72717 5.80592 5.84284 5.88921 6.00294 6.04330 6.16167 6.26208 6.29137 6.34666 6.36569 6.52654 6.54576 6.69658 6.76647 6.99860 7.08596 7.21843 7.51619 7.53015 7.74713 8.10275 8.26486 8.35690 8.42709 9.11033 9.73721 10.33220 11.13060 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.003470 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.084303 B = 8066.218987 C = 8845.873741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.256 5.256 4 N -0.067 5.067 5 N -0.275 5.275 6 C -0.011 4.011 7 C -0.055 4.055 8 C 0.586 3.414 9 O -0.533 6.533 10 N -0.583 5.583 11 C 0.089 3.911 12 C -0.132 4.132 13 C -0.125 4.125 14 C 0.177 3.823 15 H 0.055 0.945 16 N -0.570 5.570 17 C -0.255 4.255 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.150 3.850 26 C 0.054 3.946 27 O -0.566 6.566 28 C 0.106 3.894 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.202 0.798 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.254 0.746 42 H 0.109 0.891 43 H 0.028 0.972 44 H 0.021 0.979 45 H 0.041 0.959 46 H 0.357 0.643 47 H 0.096 0.904 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -2.585 -13.282 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.053 5.053 4 N -0.047 5.047 5 N -0.138 5.138 6 C -0.170 4.170 7 C -0.190 4.190 8 C 0.370 3.630 9 O -0.410 6.410 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.171 4.171 13 C -0.164 4.164 14 C 0.069 3.931 15 H 0.073 0.927 16 N -0.289 5.289 17 C -0.385 4.385 18 H 0.079 0.921 19 C -0.188 4.188 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.023 3.977 26 C -0.026 4.026 27 O -0.369 6.369 28 C -0.016 4.016 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.218 0.782 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.126 0.874 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.201 0.799 47 H 0.114 0.886 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.391 -2.669 -14.601 15.792 hybrid contribution -0.683 0.154 2.248 2.354 sum -6.075 -2.514 -12.354 13.994 Atomic orbital electron populations 1.22081 0.92477 1.04126 1.03450 1.22296 0.97051 0.75662 1.06109 1.47872 1.39942 1.13490 1.04007 1.78199 1.16735 0.97876 1.11919 1.74886 1.14870 1.11404 1.12678 1.24077 1.03515 0.97539 0.91897 1.22196 1.10461 0.94837 0.91523 1.16734 0.81852 0.81966 0.82428 1.90808 1.40708 1.31003 1.78435 1.47962 1.28119 1.46714 1.08730 1.22274 0.87457 0.93663 0.99934 1.21948 0.95493 1.01021 0.98604 1.21982 1.00845 1.01743 0.91868 1.20503 0.90766 0.95699 0.86155 0.92705 1.43670 1.82075 1.04204 0.98957 1.19006 1.18252 1.02651 0.98588 0.92074 1.25119 0.94696 0.98757 1.00250 1.69984 1.14068 1.45308 1.23630 0.86385 0.79018 0.79906 0.82419 1.20100 1.21510 1.21662 1.21091 0.90925 0.83886 1.01789 1.23162 0.99501 0.96736 0.83211 1.86594 1.40701 1.79949 1.29677 1.22447 1.01985 1.01860 0.75342 0.91627 0.89608 0.90998 0.87670 0.86670 0.78164 0.89530 0.90675 0.92278 0.91131 0.91321 0.91850 0.93551 0.87388 0.95305 0.96065 0.94114 0.79889 0.88563 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 1.07 6.67 -4.04 -0.03 1.04 16 3 N -0.26 -3.27 3.39 -57.37 -0.19 -3.47 16 4 N -0.07 -0.93 13.14 60.35 0.79 -0.14 16 5 N -0.28 -3.89 12.35 30.47 0.38 -3.51 16 6 C -0.01 -0.13 9.66 -17.35 -0.17 -0.30 16 7 C -0.06 -0.75 6.41 -82.33 -0.53 -1.28 16 8 C 0.59 9.08 7.44 -12.60 -0.09 8.98 16 9 O -0.53 -9.46 14.98 5.26 0.08 -9.38 16 10 N -0.58 -8.90 2.97 -174.10 -0.52 -9.41 16 11 C 0.09 1.11 5.18 -3.71 -0.02 1.09 16 12 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 13 C -0.12 -2.26 5.11 -26.69 -0.14 -2.39 16 14 C 0.18 3.50 2.33 -67.81 -0.16 3.35 16 15 H 0.05 1.15 7.81 -51.93 -0.41 0.75 16 16 N -0.57 -12.97 2.35 -165.52 -0.39 -13.36 16 17 C -0.26 -6.31 8.23 -15.06 -0.12 -6.43 16 18 H 0.06 1.52 6.75 -52.49 -0.35 1.17 16 19 C 0.01 0.30 4.94 -17.43 -0.09 0.22 16 20 N -0.89 -23.71 11.42 55.49 0.63 -23.08 16 21 Si 0.89 20.31 29.61 -169.99 -5.03 15.28 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.34 5.66 -4.04 -0.02 3.32 16 26 C 0.05 1.04 7.39 37.16 0.27 1.31 16 27 O -0.57 -10.39 12.60 -35.23 -0.44 -10.83 16 28 C 0.11 1.94 5.78 -3.71 -0.02 1.92 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 1.22 6.87 -51.93 -0.36 0.86 16 34 H 0.20 1.91 6.46 -52.49 -0.34 1.57 16 35 H 0.09 0.94 4.33 -51.93 -0.23 0.71 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.11 2.69 5.45 -51.93 -0.28 2.40 16 43 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.36 5.01 9.12 45.56 0.42 5.42 16 47 H 0.10 1.96 6.43 -51.93 -0.33 1.63 16 48 H 0.07 1.35 6.79 -51.93 -0.35 1.00 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -30.08 380.64 -6.26 -36.34 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.41 Total: 8.02 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.89 Total: 7.81 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.70 Total: -52.97 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.37 Total: -20.21 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.08 -6.26 -36.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.823 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds