Wall clock time and date at job start Tue Mar 31 2020 20:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47556 * 2 1 4 4 N 1.28711 * 126.03516 * 273.12589 * 3 2 1 5 5 N 1.28517 * 110.64194 * 179.97438 * 4 3 2 6 6 C 1.33322 * 109.43329 * 359.76148 * 5 4 3 7 7 C 1.37003 * 106.37504 * 0.37206 * 6 5 4 8 8 C 1.47238 * 127.18891 * 179.90301 * 7 6 5 9 9 O 1.21615 * 119.99790 * 205.63564 * 8 7 6 10 10 N 1.34774 * 119.99735 * 25.63361 * 8 7 6 11 11 C 1.46923 * 120.63070 * 0.32407 * 10 8 7 12 12 C 1.53194 * 108.77402 * 126.41333 * 11 10 8 13 13 C 1.53050 * 109.31525 * 54.63374 * 12 11 10 14 14 C 1.53040 * 109.53294 * 298.63448 * 13 12 11 15 15 H 1.08996 * 109.53017 * 301.39666 * 14 13 12 16 16 N 1.46500 * 109.49409 * 181.31395 * 14 13 12 17 17 C 1.36942 * 120.00003 * 300.16149 * 16 14 13 18 18 H 1.07994 * 119.99718 * 36.79706 * 17 16 14 19 19 C 1.38812 * 119.99903 * 217.06846 * 17 16 14 20 20 N 1.31621 * 119.99811 * 214.06944 * 19 17 16 21 21 Si 1.86798 * 120.00017 * 34.06555 * 19 17 16 22 22 H 1.48502 * 109.47185 * 89.03808 * 21 19 17 23 23 H 1.48500 * 109.47157 * 209.03481 * 21 19 17 24 24 H 1.48500 * 109.47475 * 329.03636 * 21 19 17 25 25 C 1.46502 * 119.99924 * 120.16461 * 16 14 13 26 26 C 1.52998 * 109.46884 * 275.95376 * 25 16 14 27 27 O 1.42899 * 109.46943 * 65.75802 * 26 25 16 28 28 C 1.46926 * 120.62577 * 180.34413 * 10 8 7 29 29 H 1.09006 * 109.47316 * 304.91894 * 1 2 3 30 30 H 1.09003 * 109.46901 * 64.91058 * 1 2 3 31 31 H 1.08994 * 109.47840 * 184.91391 * 1 2 3 32 32 H 1.09000 * 109.47141 * 239.99176 * 2 1 3 33 33 H 1.09000 * 109.46423 * 120.00100 * 2 1 3 34 34 H 1.08003 * 126.80731 * 180.25632 * 6 5 4 35 35 H 1.09005 * 109.58430 * 246.19535 * 11 10 8 36 36 H 1.08993 * 109.58900 * 6.62590 * 11 10 8 37 37 H 1.08997 * 109.49791 * 174.58081 * 12 11 10 38 38 H 1.08993 * 109.49714 * 294.65169 * 12 11 10 39 39 H 1.08987 * 109.45925 * 178.61482 * 13 12 11 40 40 H 1.09003 * 109.45477 * 58.65319 * 13 12 11 41 41 H 0.97001 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47153 * 35.95808 * 25 16 14 43 43 H 1.08996 * 109.47105 * 155.95771 * 25 16 14 44 44 H 1.08999 * 109.47084 * 185.75242 * 26 25 16 45 45 H 1.08993 * 109.47401 * 305.75654 * 26 25 16 46 46 H 0.96703 * 113.99827 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.58343 * 113.80423 * 28 10 8 48 48 H 1.09003 * 109.70827 * 353.44565 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2173 2.1139 -1.0393 5 7 2.6475 3.2760 -0.6986 6 6 2.7419 3.3423 0.6296 7 6 2.3436 2.1213 1.1065 8 6 2.2735 1.6954 2.5142 9 8 2.3621 0.5161 2.7978 10 7 2.1111 2.6125 3.4884 11 6 1.9955 4.0400 3.1608 12 6 0.7178 4.5910 3.8017 13 6 0.7335 4.2896 5.3021 14 6 0.7686 2.7751 5.5195 15 1 -0.1011 2.3189 5.0468 16 7 0.7520 2.4869 6.9558 17 6 1.7522 2.9624 7.7612 18 1 2.1771 3.9378 7.5757 19 6 2.2238 2.1884 8.8127 20 7 2.6227 2.7647 9.9267 21 14 2.2920 0.3291 8.6465 22 1 3.6002 -0.0684 8.0670 23 1 2.1339 -0.2937 9.9852 24 1 1.1961 -0.1288 7.7550 25 6 -0.3347 1.6898 7.5304 26 6 -1.5308 2.5967 7.8264 27 8 -2.0609 3.1016 6.5992 28 6 2.0469 2.2036 4.8981 29 1 -0.3634 0.5883 0.8427 30 1 -0.3633 0.4358 -0.9307 31 1 -0.3634 -1.0238 0.0880 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.0693 4.1898 1.2136 35 1 2.8606 4.5758 3.5515 36 1 1.9443 4.1638 2.0791 37 1 0.6692 5.6689 3.6477 38 1 -0.1515 4.1185 3.3444 39 1 -0.1630 4.7022 5.7647 40 1 1.6162 4.7420 5.7541 41 1 2.9526 2.2239 10.6613 42 1 -0.6316 0.9163 6.8222 43 1 0.0060 1.2243 8.4552 44 1 -2.2998 2.0256 8.3466 45 1 -1.2097 3.4287 8.4531 46 1 -2.8233 3.6860 6.7110 47 1 2.9163 2.5897 5.4305 48 1 2.0309 1.1157 4.9650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689205058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:09 Heat of formation + Delta-G solvation = 60.733850 kcal Electronic energy + Delta-G solvation = -31289.619017 eV Core-core repulsion = 27190.780173 eV Total energy + Delta-G solvation = -4098.838844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.47954 -39.92071 -37.75190 -36.56627 -35.61197 -34.88958 -32.66915 -31.68132 -31.54923 -31.00107 -29.87088 -27.51319 -25.97010 -24.72502 -24.24572 -23.26666 -22.71915 -21.96316 -21.04541 -19.97586 -19.15529 -17.41517 -17.31273 -16.98168 -16.57924 -16.37336 -15.93246 -15.34994 -15.03835 -14.89290 -14.51991 -14.39857 -14.01167 -13.79675 -13.56743 -13.34944 -13.22698 -13.04256 -12.73209 -12.62136 -12.50272 -12.28761 -12.20845 -11.88342 -11.77322 -11.47206 -11.21058 -11.10702 -10.78638 -10.66807 -10.44085 -10.33871 -10.30279 -10.20067 -10.00812 -9.82621 -9.63807 -9.47029 -9.34615 -8.54230 -8.42642 -6.89003 -6.16976 -3.44221 0.87822 1.90695 2.18146 2.91842 3.06082 3.31937 3.44373 3.51377 4.11515 4.24803 4.46559 4.48821 4.55760 4.74467 4.76315 4.91348 4.92618 5.02112 5.10265 5.20586 5.23802 5.25965 5.36605 5.55325 5.64468 5.70660 5.74905 5.78400 5.88247 5.92192 5.99176 6.06202 6.12394 6.21021 6.25113 6.27674 6.45129 6.53114 6.61722 6.64185 6.75931 6.95119 7.05805 7.42228 7.93121 8.02996 8.13424 8.22487 8.31893 8.91933 9.63787 10.08967 10.98364 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.003714 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.733404 B = 7537.306131 C = 7781.031604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.255 5.255 4 N -0.066 5.066 5 N -0.275 5.275 6 C -0.017 4.017 7 C -0.055 4.055 8 C 0.586 3.414 9 O -0.540 6.540 10 N -0.580 5.580 11 C 0.074 3.926 12 C -0.129 4.129 13 C -0.122 4.122 14 C 0.178 3.822 15 H 0.060 0.940 16 N -0.587 5.587 17 C -0.280 4.280 18 H 0.079 0.921 19 C 0.050 3.950 20 N -0.877 5.877 21 Si 0.839 3.161 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.262 1.262 25 C 0.153 3.847 26 C 0.056 3.944 27 O -0.567 6.567 28 C 0.099 3.901 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.210 0.790 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.264 0.736 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.052 0.948 46 H 0.361 0.639 47 H 0.085 0.915 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 0.026 -14.923 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.051 5.051 4 N -0.046 5.046 5 N -0.138 5.138 6 C -0.176 4.176 7 C -0.190 4.190 8 C 0.371 3.629 9 O -0.418 6.418 10 N -0.312 5.312 11 C -0.048 4.048 12 C -0.168 4.168 13 C -0.161 4.161 14 C 0.070 3.930 15 H 0.078 0.922 16 N -0.308 5.308 17 C -0.407 4.407 18 H 0.096 0.904 19 C -0.153 4.153 20 N -0.515 5.515 21 Si 0.665 3.335 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.187 1.187 25 C 0.027 3.973 26 C -0.024 4.024 27 O -0.371 6.371 28 C -0.023 4.023 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.205 0.795 47 H 0.103 0.897 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.496 -0.955 -16.331 17.257 hybrid contribution -0.194 -0.862 1.610 1.837 sum -5.690 -1.817 -14.721 15.886 Atomic orbital electron populations 1.22122 0.92685 1.04194 1.03408 1.22460 0.96674 0.75863 1.07088 1.47855 1.40338 1.13510 1.03439 1.78206 1.16052 0.98540 1.11795 1.74907 1.15607 1.10714 1.12533 1.24293 1.04206 0.97305 0.91815 1.22097 1.11690 0.94000 0.91192 1.16746 0.77975 0.85731 0.82436 1.90780 1.51578 1.16584 1.82886 1.47974 1.69108 1.06808 1.07306 1.22636 0.99730 0.80588 1.01869 1.21902 0.96620 1.00440 0.97858 1.21884 1.02849 0.98434 0.92920 1.20553 0.94001 0.93495 0.84980 0.92185 1.43997 1.23177 1.62094 1.01490 1.18601 1.13948 0.99492 1.08692 0.90382 1.25460 0.97098 0.97134 0.95613 1.70064 1.42902 1.36146 1.02416 0.87533 0.79075 0.89632 0.77222 1.21364 1.22149 1.18658 1.21267 0.86491 0.91749 0.97837 1.23046 0.95592 0.98110 0.85642 1.86534 1.50272 1.68080 1.32179 1.22550 1.01886 1.01560 0.76339 0.91546 0.91386 0.89403 0.87408 0.85671 0.77352 0.90348 0.88347 0.91034 0.92064 0.91326 0.91628 0.92636 0.94229 0.91171 0.95617 0.93006 0.79471 0.89694 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.10 0.99 6.93 -4.05 -0.03 0.96 16 3 N -0.25 -3.26 3.39 -57.38 -0.19 -3.46 16 4 N -0.07 -0.91 13.14 60.35 0.79 -0.11 16 5 N -0.27 -3.82 12.35 30.47 0.38 -3.45 16 6 C -0.02 -0.21 9.78 -17.35 -0.17 -0.38 16 7 C -0.05 -0.75 6.61 -82.33 -0.54 -1.29 16 8 C 0.59 9.16 7.59 -12.60 -0.10 9.07 16 9 O -0.54 -9.88 14.51 5.26 0.08 -9.80 16 10 N -0.58 -8.78 2.97 -174.10 -0.52 -9.30 16 11 C 0.07 0.87 5.48 -3.71 -0.02 0.85 16 12 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 13 C -0.12 -1.98 5.11 -26.68 -0.14 -2.11 16 14 C 0.18 3.30 2.16 -67.81 -0.15 3.16 16 15 H 0.06 1.16 7.57 -51.93 -0.39 0.77 16 16 N -0.59 -12.69 1.99 -165.53 -0.33 -13.02 16 17 C -0.28 -7.00 8.44 -15.06 -0.13 -7.13 16 18 H 0.08 2.11 7.02 -52.49 -0.37 1.74 16 19 C 0.05 1.32 4.98 -17.43 -0.09 1.23 16 20 N -0.88 -24.86 13.97 55.49 0.78 -24.09 16 21 Si 0.84 20.38 26.46 -169.99 -4.50 15.89 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.10 5.76 56.52 0.33 -5.78 16 25 C 0.15 3.15 4.26 -4.04 -0.02 3.13 16 26 C 0.06 0.98 7.39 37.16 0.27 1.26 16 27 O -0.57 -9.05 12.27 -35.23 -0.43 -9.48 16 28 C 0.10 1.82 5.76 -3.71 -0.02 1.80 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.39 6.22 -51.93 -0.32 1.07 16 34 H 0.21 1.89 5.83 -52.48 -0.31 1.59 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.98 3.35 -51.93 -0.17 0.81 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.18 7.71 -51.94 -0.40 0.78 16 40 H 0.07 1.16 7.04 -51.93 -0.37 0.80 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 43 H 0.07 1.55 4.63 -51.93 -0.24 1.31 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.36 4.07 9.12 45.56 0.42 4.48 16 47 H 0.08 1.69 7.50 -51.93 -0.39 1.30 16 48 H 0.08 1.74 7.01 -51.93 -0.36 1.38 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -31.56 374.45 -5.55 -37.11 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.34 Total: 6.34 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -0.90 Total: 7.73 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.90 Total: -53.42 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.36 Total: -19.29 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.50 Total: 15.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.56 -5.55 -37.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.846 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds