Wall clock time and date at job start Tue Mar 31 2020 20:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47556 * 2 1 4 4 N 1.28711 * 126.03516 * 273.12589 * 3 2 1 5 5 N 1.28517 * 110.64194 * 179.97438 * 4 3 2 6 6 C 1.33322 * 109.43329 * 359.76148 * 5 4 3 7 7 C 1.37003 * 106.37504 * 0.37206 * 6 5 4 8 8 C 1.47238 * 127.18891 * 179.90301 * 7 6 5 9 9 O 1.21615 * 119.99790 * 205.63564 * 8 7 6 10 10 N 1.34774 * 119.99735 * 25.63361 * 8 7 6 11 11 C 1.46923 * 120.63070 * 0.32407 * 10 8 7 12 12 C 1.53194 * 108.77402 * 126.41333 * 11 10 8 13 13 C 1.53050 * 109.31525 * 54.63374 * 12 11 10 14 14 C 1.53040 * 109.53294 * 298.63448 * 13 12 11 15 15 H 1.08996 * 109.53017 * 301.39666 * 14 13 12 16 16 N 1.46500 * 109.49409 * 181.31395 * 14 13 12 17 17 C 1.36942 * 120.00003 * 300.16149 * 16 14 13 18 18 H 1.07994 * 119.99718 * 36.79706 * 17 16 14 19 19 C 1.38812 * 119.99903 * 217.06846 * 17 16 14 20 20 N 1.31621 * 119.99811 * 214.06944 * 19 17 16 21 21 Si 1.86798 * 120.00017 * 34.06555 * 19 17 16 22 22 H 1.48502 * 109.47185 * 89.03808 * 21 19 17 23 23 H 1.48500 * 109.47157 * 209.03481 * 21 19 17 24 24 H 1.48500 * 109.47475 * 329.03636 * 21 19 17 25 25 C 1.46502 * 119.99924 * 120.16461 * 16 14 13 26 26 C 1.52998 * 109.46884 * 275.95376 * 25 16 14 27 27 O 1.42899 * 109.46943 * 65.75802 * 26 25 16 28 28 C 1.46926 * 120.62577 * 180.34413 * 10 8 7 29 29 H 1.09006 * 109.47316 * 304.91894 * 1 2 3 30 30 H 1.09003 * 109.46901 * 64.91058 * 1 2 3 31 31 H 1.08994 * 109.47840 * 184.91391 * 1 2 3 32 32 H 1.09000 * 109.47141 * 239.99176 * 2 1 3 33 33 H 1.09000 * 109.46423 * 120.00100 * 2 1 3 34 34 H 1.08003 * 126.80731 * 180.25632 * 6 5 4 35 35 H 1.09005 * 109.58430 * 246.19535 * 11 10 8 36 36 H 1.08993 * 109.58900 * 6.62590 * 11 10 8 37 37 H 1.08997 * 109.49791 * 174.58081 * 12 11 10 38 38 H 1.08993 * 109.49714 * 294.65169 * 12 11 10 39 39 H 1.08987 * 109.45925 * 178.61482 * 13 12 11 40 40 H 1.09003 * 109.45477 * 58.65319 * 13 12 11 41 41 H 0.97001 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47153 * 35.95808 * 25 16 14 43 43 H 1.08996 * 109.47105 * 155.95771 * 25 16 14 44 44 H 1.08999 * 109.47084 * 185.75242 * 26 25 16 45 45 H 1.08993 * 109.47401 * 305.75654 * 26 25 16 46 46 H 0.96703 * 113.99827 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.58343 * 113.80423 * 28 10 8 48 48 H 1.09003 * 109.70827 * 353.44565 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2173 2.1139 -1.0393 5 7 2.6475 3.2760 -0.6986 6 6 2.7419 3.3423 0.6296 7 6 2.3436 2.1213 1.1065 8 6 2.2735 1.6954 2.5142 9 8 2.3621 0.5161 2.7978 10 7 2.1111 2.6125 3.4884 11 6 1.9955 4.0400 3.1608 12 6 0.7178 4.5910 3.8017 13 6 0.7335 4.2896 5.3021 14 6 0.7686 2.7751 5.5195 15 1 -0.1011 2.3189 5.0468 16 7 0.7520 2.4869 6.9558 17 6 1.7522 2.9624 7.7612 18 1 2.1771 3.9378 7.5757 19 6 2.2238 2.1884 8.8127 20 7 2.6227 2.7647 9.9267 21 14 2.2920 0.3291 8.6465 22 1 3.6002 -0.0684 8.0670 23 1 2.1339 -0.2937 9.9852 24 1 1.1961 -0.1288 7.7550 25 6 -0.3347 1.6898 7.5304 26 6 -1.5308 2.5967 7.8264 27 8 -2.0609 3.1016 6.5992 28 6 2.0469 2.2036 4.8981 29 1 -0.3634 0.5883 0.8427 30 1 -0.3633 0.4358 -0.9307 31 1 -0.3634 -1.0238 0.0880 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.0693 4.1898 1.2136 35 1 2.8606 4.5758 3.5515 36 1 1.9443 4.1638 2.0791 37 1 0.6692 5.6689 3.6477 38 1 -0.1515 4.1185 3.3444 39 1 -0.1630 4.7022 5.7647 40 1 1.6162 4.7420 5.7541 41 1 2.9526 2.2239 10.6613 42 1 -0.6316 0.9163 6.8222 43 1 0.0060 1.2243 8.4552 44 1 -2.2998 2.0256 8.3466 45 1 -1.2097 3.4287 8.4531 46 1 -2.8233 3.6860 6.7110 47 1 2.9163 2.5897 5.4305 48 1 2.0309 1.1157 4.9650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689205058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:08 Heat of formation + Delta-G solvation = 36.967740 kcal Electronic energy + Delta-G solvation = -31290.649593 eV Core-core repulsion = 27190.780173 eV Total energy + Delta-G solvation = -4099.869420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.49340 -41.19672 -39.19356 -37.87615 -36.66060 -36.24931 -34.19274 -33.26693 -32.81171 -31.85448 -31.20817 -29.15779 -27.16807 -26.05874 -25.51298 -24.36794 -24.03473 -23.07520 -22.48906 -21.39276 -20.39419 -18.60166 -18.41839 -18.33121 -18.17593 -17.50690 -17.25376 -16.84289 -16.43226 -16.17871 -15.83814 -15.42883 -15.29348 -15.23302 -14.99474 -14.74148 -14.39446 -14.14289 -14.09062 -13.99732 -13.92331 -13.55808 -13.23624 -13.14585 -12.96308 -12.85138 -12.71550 -12.35484 -12.15430 -12.08926 -12.05911 -11.76992 -11.64861 -11.49745 -11.36416 -11.28881 -11.16767 -10.71355 -10.55901 -10.48661 -9.77344 -8.70637 -8.23663 -5.45113 -0.17417 0.92756 1.16113 1.32643 1.45478 1.51257 1.77342 1.87873 2.44732 2.96575 3.07773 3.30551 3.38697 3.60354 3.63030 3.80617 3.82813 3.99086 4.10310 4.13698 4.19679 4.26394 4.29862 4.45757 4.49205 4.53604 4.57296 4.61014 4.65054 4.75359 4.77114 4.86886 4.90039 4.96771 5.01413 5.03458 5.09037 5.16225 5.24075 5.31912 5.39269 5.51639 5.66508 5.95822 6.21223 6.27722 6.80666 7.01566 7.07495 7.20046 7.69195 8.16233 8.96049 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.003714 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.733404 B = 7537.306131 C = 7781.031604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.249 5.249 4 N -0.072 5.072 5 N -0.292 5.292 6 C 0.000 4.000 7 C -0.071 4.071 8 C 0.589 3.411 9 O -0.573 6.573 10 N -0.580 5.580 11 C 0.071 3.929 12 C -0.120 4.120 13 C -0.112 4.112 14 C 0.181 3.819 15 H 0.058 0.942 16 N -0.597 5.597 17 C -0.250 4.250 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.922 5.922 21 Si 0.887 3.113 22 H -0.302 1.302 23 H -0.298 1.298 24 H -0.249 1.249 25 C 0.143 3.857 26 C 0.071 3.929 27 O -0.574 6.574 28 C 0.112 3.888 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.262 0.738 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.032 0.968 46 H 0.385 0.615 47 H 0.066 0.934 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 0.616 -17.345 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.047 5.047 4 N -0.052 5.052 5 N -0.155 5.155 6 C -0.160 4.160 7 C -0.206 4.206 8 C 0.375 3.625 9 O -0.453 6.453 10 N -0.310 5.310 11 C -0.049 4.049 12 C -0.158 4.158 13 C -0.152 4.152 14 C 0.074 3.926 15 H 0.076 0.924 16 N -0.319 5.319 17 C -0.379 4.379 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.564 5.564 21 Si 0.715 3.285 22 H -0.230 1.230 23 H -0.225 1.225 24 H -0.173 1.173 25 C 0.017 3.983 26 C -0.009 4.009 27 O -0.381 6.381 28 C -0.012 4.012 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.256 0.744 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.233 0.767 47 H 0.084 0.916 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.890 -0.349 -18.809 20.034 hybrid contribution 0.165 -1.015 2.254 2.478 sum -6.725 -1.365 -16.554 17.920 Atomic orbital electron populations 1.22096 0.91499 1.05283 1.02796 1.22714 0.97622 0.74761 1.07659 1.48130 1.39476 1.14142 1.02987 1.78182 1.16193 0.98814 1.11998 1.74914 1.16347 1.10926 1.13275 1.24765 1.02454 0.97426 0.91358 1.21860 1.13581 0.94904 0.90274 1.16946 0.77112 0.85209 0.83248 1.90765 1.52963 1.18056 1.83532 1.47934 1.68960 1.08341 1.05811 1.22924 1.00185 0.78417 1.03419 1.21853 0.96925 1.02536 0.94493 1.21735 1.01542 0.95987 0.95899 1.20635 0.93797 0.95188 0.83021 0.92396 1.44127 1.22910 1.62117 1.02701 1.18470 1.13317 0.98125 1.07971 0.92803 1.25808 0.98154 0.99577 0.95755 1.70131 1.45891 1.37066 1.03312 0.86756 0.78480 0.86403 0.76884 1.22996 1.22538 1.17259 1.21316 0.87394 0.92481 0.97080 1.22662 0.95211 0.97068 0.85984 1.86463 1.51614 1.68803 1.31228 1.22123 1.00875 0.99789 0.78411 0.93548 0.90700 0.87239 0.84846 0.87066 0.74375 0.88745 0.85884 0.87852 0.91905 0.92163 0.93367 0.92901 0.93724 0.92932 0.92770 0.94993 0.76713 0.91606 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 71.98 0.74 -1.70 16 2 C 0.09 1.68 6.93 86.38 0.60 2.28 16 3 N -0.25 -5.96 3.39 -335.44 -1.14 -7.10 16 4 N -0.07 -1.83 13.14 37.02 0.49 -1.34 16 5 N -0.29 -7.40 12.35 -57.50 -0.71 -8.11 16 6 C 0.00 -0.01 9.78 84.18 0.82 0.82 16 7 C -0.07 -1.81 6.61 40.41 0.27 -1.54 16 8 C 0.59 17.85 7.59 86.61 0.66 18.50 16 9 O -0.57 -21.03 14.51 -4.08 -0.06 -21.09 16 10 N -0.58 -16.83 2.97 -822.99 -2.45 -19.27 16 11 C 0.07 1.47 5.48 86.36 0.47 1.94 16 12 C -0.12 -2.60 6.08 30.68 0.19 -2.41 16 13 C -0.11 -3.51 5.11 30.62 0.16 -3.35 16 14 C 0.18 6.63 2.16 45.07 0.10 6.73 16 15 H 0.06 2.17 7.57 -2.39 -0.02 2.16 16 16 N -0.60 -25.89 1.99 -677.61 -1.35 -27.24 16 17 C -0.25 -12.77 8.44 84.03 0.71 -12.06 16 18 H 0.05 3.01 7.02 -2.91 -0.02 2.99 16 19 C 0.01 0.31 4.98 84.86 0.42 0.73 16 20 N -0.92 -53.87 13.97 21.65 0.30 -53.57 16 21 Si 0.89 43.31 26.46 68.60 1.82 45.12 16 22 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.25 -11.42 5.76 99.48 0.57 -10.85 16 25 C 0.14 5.80 4.26 86.38 0.37 6.17 16 26 C 0.07 2.38 7.39 71.98 0.53 2.91 16 27 O -0.57 -16.99 12.27 -148.98 -1.83 -18.82 16 28 C 0.11 4.14 5.76 86.36 0.50 4.63 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 2.42 6.22 -2.39 -0.01 2.40 16 34 H 0.24 3.33 5.83 -2.91 -0.02 3.32 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.12 1.97 3.35 -2.39 -0.01 1.96 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.99 7.71 -2.39 -0.02 1.97 16 40 H 0.05 1.68 7.04 -2.39 -0.02 1.66 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 43 H 0.05 2.31 4.63 -2.39 -0.01 2.30 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.38 7.54 9.12 -74.06 -0.68 6.86 16 47 H 0.07 2.67 7.50 -2.38 -0.02 2.65 16 48 H 0.06 2.45 7.01 -2.39 -0.02 2.44 16 Total: -1.00 -70.38 374.45 1.78 -68.60 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.19 Total: 19.17 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.53 Total: 23.65 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.86 Total: -116.63 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.89 Total: -39.91 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.82 Total: 45.12 kcal Total: -70.38 1.78 -68.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689205058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.565 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds