Wall clock time and date at job start Tue Mar 31 2020 20:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47196 * 2 1 4 4 C 1.34816 * 126.59554 * 125.00391 * 3 2 1 5 5 C 1.36594 * 106.84128 * 179.97438 * 4 3 2 6 6 C 1.47528 * 125.76940 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99732 * 353.11820 * 6 5 4 8 8 N 1.34774 * 119.99900 * 173.11458 * 6 5 4 9 9 C 1.46926 * 120.63012 * 172.61311 * 8 6 5 10 10 C 1.53186 * 108.77682 * 126.41421 * 9 8 6 11 11 C 1.53044 * 109.31407 * 54.63339 * 10 9 8 12 12 C 1.53045 * 109.53863 * 298.63569 * 11 10 9 13 13 H 1.09001 * 109.52377 * 301.39719 * 12 11 10 14 14 N 1.46496 * 109.49980 * 181.31351 * 12 11 10 15 15 C 1.36934 * 120.00167 * 300.16552 * 14 12 11 16 16 H 1.07995 * 120.00097 * 37.08611 * 15 14 12 17 17 C 1.38810 * 119.99892 * 217.36402 * 15 14 12 18 18 N 1.31619 * 119.99936 * 210.75181 * 17 15 14 19 19 Si 1.86799 * 120.00193 * 30.75223 * 17 15 14 20 20 H 1.48494 * 109.47288 * 96.01684 * 19 17 15 21 21 H 1.48497 * 109.47062 * 216.02093 * 19 17 15 22 22 H 1.48502 * 109.47047 * 336.01850 * 19 17 15 23 23 C 1.46502 * 119.99824 * 120.15829 * 14 12 11 24 24 C 1.52999 * 109.47424 * 268.98964 * 23 14 12 25 25 O 1.42894 * 109.46926 * 61.21573 * 24 23 14 26 26 C 1.46929 * 120.63033 * 352.63283 * 8 6 5 27 27 N 1.34394 * 108.45886 * 0.24490 * 5 4 3 28 28 N 1.28767 * 109.52504 * 359.58204 * 27 5 4 29 29 H 1.09000 * 109.46926 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46491 * 300.00114 * 1 2 3 32 32 H 1.09003 * 109.46880 * 240.00256 * 2 1 3 33 33 H 1.08998 * 109.47142 * 120.00018 * 2 1 3 34 34 H 1.08002 * 126.57551 * 359.93687 * 4 3 2 35 35 H 1.09006 * 109.58344 * 246.20026 * 9 8 6 36 36 H 1.08996 * 109.58744 * 6.62386 * 9 8 6 37 37 H 1.08997 * 109.50279 * 174.58469 * 10 9 8 38 38 H 1.09004 * 109.49887 * 294.65233 * 10 9 8 39 39 H 1.09001 * 109.46102 * 178.61425 * 11 10 9 40 40 H 1.08997 * 109.46149 * 58.65177 * 11 10 9 41 41 H 0.97002 * 120.00031 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46800 * 28.99307 * 23 14 12 43 43 H 1.09003 * 109.46635 * 148.98854 * 23 14 12 44 44 H 1.08996 * 109.47200 * 181.21715 * 24 23 14 45 45 H 1.08997 * 109.46887 * 301.21559 * 24 23 14 46 46 H 0.96701 * 113.99618 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.58498 * 113.79490 * 26 8 6 48 48 H 1.08997 * 109.70336 * 353.44538 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8717 1.9320 0.8866 5 6 3.0510 3.2321 0.5081 6 6 3.9078 4.2191 1.1923 7 8 4.4317 3.9378 2.2530 8 7 4.1099 5.4326 0.6418 9 6 4.8247 6.4810 1.3824 10 6 5.9776 6.9978 0.5162 11 6 5.4295 7.4486 -0.8397 12 6 4.7856 6.2575 -1.5531 13 1 5.5253 5.4674 -1.6830 14 7 4.2891 6.6828 -2.8641 15 6 3.3467 7.6724 -2.9512 16 1 3.3797 8.5109 -2.2714 17 6 2.3455 7.5949 -3.9095 18 7 1.8384 8.6961 -4.4221 19 14 1.7177 5.9279 -4.4718 20 1 0.4940 5.5762 -3.7075 21 1 1.3977 5.9824 -5.9209 22 1 2.7623 4.8996 -4.2339 23 6 4.8009 6.0494 -4.0819 24 6 6.0102 6.8336 -4.5952 25 8 7.0429 6.8167 -3.6076 26 6 3.6192 5.7323 -0.7103 27 7 2.3103 3.4618 -0.5895 28 7 1.6887 2.3844 -0.9224 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3258 1.4398 1.7339 35 1 4.1413 7.2998 1.6076 36 1 5.2212 6.0676 2.3098 37 1 6.4567 7.8412 1.0135 38 1 6.7066 6.2011 0.3678 39 1 6.2443 7.8397 -1.4490 40 1 4.6828 8.2281 -0.6885 41 1 1.1385 8.6420 -5.0915 42 1 5.0996 5.0247 -3.8605 43 1 4.0213 6.0440 -4.8438 44 1 6.3777 6.3750 -5.5131 45 1 5.7165 7.8638 -4.7961 46 1 7.8421 7.2956 -3.8662 47 1 2.8375 6.4900 -0.6558 48 1 3.2186 4.8263 -1.1651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689208356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:14 Heat of formation + Delta-G solvation = 57.589752 kcal Electronic energy + Delta-G solvation = -31232.283721 eV Core-core repulsion = 27133.308539 eV Total energy + Delta-G solvation = -4098.975182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20086 -39.52723 -37.52294 -36.22414 -35.58631 -34.56946 -32.34492 -31.57357 -31.39980 -30.33769 -29.66899 -27.29772 -25.30863 -24.86609 -23.98691 -23.03025 -22.15330 -21.78029 -20.76783 -19.82194 -18.94924 -17.41793 -16.85809 -16.39451 -16.28482 -16.16469 -15.71627 -15.05639 -14.84364 -14.70977 -14.59232 -14.27512 -13.84035 -13.67018 -13.47393 -13.20123 -13.06763 -12.86186 -12.67716 -12.53360 -12.36430 -12.16607 -12.05374 -11.86512 -11.62220 -11.40170 -11.28369 -10.80267 -10.55437 -10.49095 -10.36663 -10.14240 -10.09418 -9.98909 -9.74893 -9.47613 -9.29334 -9.21356 -9.20049 -8.37183 -8.13294 -6.69039 -5.98873 -3.28823 1.15338 1.84741 1.97919 3.29824 3.44889 3.49696 3.58301 3.67917 4.09384 4.26630 4.46776 4.60345 4.65347 4.71905 4.90938 5.01199 5.10337 5.13660 5.16614 5.33967 5.42699 5.46396 5.49303 5.64575 5.67906 5.75570 5.96044 5.97895 6.06117 6.14348 6.18442 6.24638 6.31576 6.36088 6.45805 6.56097 6.64297 6.72961 6.83302 6.87841 7.04770 7.19073 7.29044 7.76192 8.05352 8.10502 8.28341 8.42513 8.49220 9.09048 9.80556 10.25362 11.16857 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.004933 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.105197 B = 5674.181535 C = 7298.282282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.365 5.365 4 C 0.086 3.914 5 C -0.095 4.095 6 C 0.601 3.399 7 O -0.559 6.559 8 N -0.586 5.586 9 C 0.113 3.887 10 C -0.129 4.129 11 C -0.123 4.123 12 C 0.180 3.820 13 H 0.052 0.948 14 N -0.586 5.586 15 C -0.267 4.267 16 H 0.078 0.922 17 C 0.044 3.956 18 N -0.888 5.888 19 Si 0.848 3.152 20 H -0.287 1.287 21 H -0.299 1.299 22 H -0.259 1.259 23 C 0.153 3.847 24 C 0.057 3.943 25 O -0.564 6.564 26 C 0.070 3.930 27 N -0.189 5.189 28 N -0.066 5.066 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.261 0.739 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.359 0.641 47 H 0.079 0.921 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -15.113 8.797 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.150 5.150 4 C -0.070 4.070 5 C -0.233 4.233 6 C 0.387 3.613 7 O -0.438 6.438 8 N -0.317 5.317 9 C -0.010 4.010 10 C -0.168 4.168 11 C -0.162 4.162 12 C 0.072 3.928 13 H 0.071 0.929 14 N -0.307 5.307 15 C -0.395 4.395 16 H 0.095 0.905 17 C -0.158 4.158 18 N -0.528 5.528 19 Si 0.676 3.324 20 H -0.214 1.214 21 H -0.226 1.226 22 H -0.184 1.184 23 C 0.027 3.973 24 C -0.023 4.023 25 O -0.367 6.367 26 C -0.054 4.054 27 N -0.062 5.062 28 N -0.045 5.045 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.219 0.781 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.203 0.797 47 H 0.097 0.903 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.707 -15.229 8.284 17.547 hybrid contribution 0.272 -0.843 -0.073 0.889 sum 2.978 -16.073 8.211 18.293 Atomic orbital electron populations 1.22089 0.92828 1.03497 1.04203 1.21990 0.96841 0.76485 1.04890 1.50657 1.31899 1.12297 1.20178 1.23287 0.93571 0.94101 0.96085 1.21537 1.07556 0.95055 0.99197 1.16809 0.79682 0.81024 0.83810 1.90734 1.51536 1.78493 1.23053 1.48057 1.54665 1.11214 1.17732 1.21651 0.94182 0.89764 0.95358 1.21902 0.97164 1.00472 0.97250 1.21907 1.00683 0.99669 0.93989 1.20528 0.92665 0.94063 0.85551 0.92933 1.43921 1.45401 1.42917 0.98470 1.18607 1.03656 0.98465 1.18785 0.90487 1.25451 0.96845 0.95889 0.97582 1.70018 1.28342 1.27297 1.27123 0.87422 0.80294 0.88141 0.76589 1.21381 1.22587 1.18390 1.21263 0.92098 0.93794 0.90137 1.23004 0.89230 1.01083 0.89030 1.86549 1.27034 1.77869 1.45204 1.23256 0.98683 1.04350 0.79094 1.74729 1.04651 1.17090 1.09732 1.82103 1.20079 0.90462 1.11878 0.90587 0.90031 0.91714 0.88450 0.87862 0.78098 0.91432 0.89635 0.91493 0.92174 0.91242 0.91865 0.92900 0.94168 0.91803 0.95895 0.93008 0.79656 0.90289 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.12 37.16 0.38 -0.71 16 2 C 0.12 0.78 7.26 -4.04 -0.03 0.75 16 3 N -0.36 -4.31 3.69 -61.06 -0.23 -4.53 16 4 C 0.09 1.05 11.28 -16.83 -0.19 0.86 16 5 C -0.09 -1.57 6.69 -83.55 -0.56 -2.13 16 6 C 0.60 10.73 7.67 -12.47 -0.10 10.63 16 7 O -0.56 -10.40 16.30 5.28 0.09 -10.31 16 8 N -0.59 -10.62 2.97 -174.00 -0.52 -11.13 16 9 C 0.11 1.79 6.44 -3.71 -0.02 1.77 16 10 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 11 C -0.12 -2.31 5.11 -26.68 -0.14 -2.45 16 12 C 0.18 3.72 2.32 -67.81 -0.16 3.56 16 13 H 0.05 1.11 7.78 -51.93 -0.40 0.71 16 14 N -0.59 -13.65 1.92 -165.53 -0.32 -13.97 16 15 C -0.27 -7.14 8.47 -15.06 -0.13 -7.27 16 16 H 0.08 2.24 7.02 -52.49 -0.37 1.87 16 17 C 0.04 1.22 5.13 -17.43 -0.09 1.13 16 18 N -0.89 -26.46 13.97 55.49 0.78 -25.68 16 19 Si 0.85 21.77 26.20 -169.99 -4.45 17.32 16 20 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 22 H -0.26 -6.40 5.66 56.52 0.32 -6.08 16 23 C 0.15 3.37 4.42 -4.04 -0.02 3.35 16 24 C 0.06 1.08 7.41 37.16 0.28 1.35 16 25 O -0.56 -9.93 12.27 -35.23 -0.43 -10.36 16 26 C 0.07 1.43 5.40 -3.71 -0.02 1.41 16 27 N -0.19 -3.54 8.80 32.85 0.29 -3.25 16 28 N -0.07 -1.10 13.65 60.35 0.82 -0.27 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.20 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.35 7.29 -51.93 -0.38 0.97 16 40 H 0.06 1.28 7.04 -51.93 -0.37 0.92 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.04 0.85 7.90 -51.93 -0.41 0.44 16 43 H 0.06 1.49 4.08 -51.93 -0.21 1.28 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.36 4.60 9.12 45.56 0.42 5.02 16 47 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 48 H 0.12 2.55 4.14 -76.14 -0.32 2.23 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.57 380.05 -5.86 -40.43 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.66 Total: 5.92 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.96 Total: 10.12 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.83 Total: -58.85 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.35 Total: -20.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.45 Total: 17.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.57 -5.86 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689208356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.017 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds