Wall clock time and date at job start Tue Mar 31 2020 20:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47196 * 2 1 4 4 C 1.34816 * 126.59554 * 125.00391 * 3 2 1 5 5 C 1.36594 * 106.84128 * 179.97438 * 4 3 2 6 6 C 1.47528 * 125.76940 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99732 * 353.11820 * 6 5 4 8 8 N 1.34774 * 119.99900 * 173.11458 * 6 5 4 9 9 C 1.46926 * 120.63012 * 172.61311 * 8 6 5 10 10 C 1.53186 * 108.77682 * 126.41421 * 9 8 6 11 11 C 1.53044 * 109.31407 * 54.63339 * 10 9 8 12 12 C 1.53045 * 109.53863 * 298.63569 * 11 10 9 13 13 H 1.09001 * 109.52377 * 301.39719 * 12 11 10 14 14 N 1.46496 * 109.49980 * 181.31351 * 12 11 10 15 15 C 1.36934 * 120.00167 * 300.16552 * 14 12 11 16 16 H 1.07995 * 120.00097 * 37.08611 * 15 14 12 17 17 C 1.38810 * 119.99892 * 217.36402 * 15 14 12 18 18 N 1.31619 * 119.99936 * 210.75181 * 17 15 14 19 19 Si 1.86799 * 120.00193 * 30.75223 * 17 15 14 20 20 H 1.48494 * 109.47288 * 96.01684 * 19 17 15 21 21 H 1.48497 * 109.47062 * 216.02093 * 19 17 15 22 22 H 1.48502 * 109.47047 * 336.01850 * 19 17 15 23 23 C 1.46502 * 119.99824 * 120.15829 * 14 12 11 24 24 C 1.52999 * 109.47424 * 268.98964 * 23 14 12 25 25 O 1.42894 * 109.46926 * 61.21573 * 24 23 14 26 26 C 1.46929 * 120.63033 * 352.63283 * 8 6 5 27 27 N 1.34394 * 108.45886 * 0.24490 * 5 4 3 28 28 N 1.28767 * 109.52504 * 359.58204 * 27 5 4 29 29 H 1.09000 * 109.46926 * 59.99236 * 1 2 3 30 30 H 1.08993 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46491 * 300.00114 * 1 2 3 32 32 H 1.09003 * 109.46880 * 240.00256 * 2 1 3 33 33 H 1.08998 * 109.47142 * 120.00018 * 2 1 3 34 34 H 1.08002 * 126.57551 * 359.93687 * 4 3 2 35 35 H 1.09006 * 109.58344 * 246.20026 * 9 8 6 36 36 H 1.08996 * 109.58744 * 6.62386 * 9 8 6 37 37 H 1.08997 * 109.50279 * 174.58469 * 10 9 8 38 38 H 1.09004 * 109.49887 * 294.65233 * 10 9 8 39 39 H 1.09001 * 109.46102 * 178.61425 * 11 10 9 40 40 H 1.08997 * 109.46149 * 58.65177 * 11 10 9 41 41 H 0.97002 * 120.00031 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46800 * 28.99307 * 23 14 12 43 43 H 1.09003 * 109.46635 * 148.98854 * 23 14 12 44 44 H 1.08996 * 109.47200 * 181.21715 * 24 23 14 45 45 H 1.08997 * 109.46887 * 301.21559 * 24 23 14 46 46 H 0.96701 * 113.99618 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.58498 * 113.79490 * 26 8 6 48 48 H 1.08997 * 109.70336 * 353.44538 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8717 1.9320 0.8866 5 6 3.0510 3.2321 0.5081 6 6 3.9078 4.2191 1.1923 7 8 4.4317 3.9378 2.2530 8 7 4.1099 5.4326 0.6418 9 6 4.8247 6.4810 1.3824 10 6 5.9776 6.9978 0.5162 11 6 5.4295 7.4486 -0.8397 12 6 4.7856 6.2575 -1.5531 13 1 5.5253 5.4674 -1.6830 14 7 4.2891 6.6828 -2.8641 15 6 3.3467 7.6724 -2.9512 16 1 3.3797 8.5109 -2.2714 17 6 2.3455 7.5949 -3.9095 18 7 1.8384 8.6961 -4.4221 19 14 1.7177 5.9279 -4.4718 20 1 0.4940 5.5762 -3.7075 21 1 1.3977 5.9824 -5.9209 22 1 2.7623 4.8996 -4.2339 23 6 4.8009 6.0494 -4.0819 24 6 6.0102 6.8336 -4.5952 25 8 7.0429 6.8167 -3.6076 26 6 3.6192 5.7323 -0.7103 27 7 2.3103 3.4618 -0.5895 28 7 1.6887 2.3844 -0.9224 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3258 1.4398 1.7339 35 1 4.1413 7.2998 1.6076 36 1 5.2212 6.0676 2.3098 37 1 6.4567 7.8412 1.0135 38 1 6.7066 6.2011 0.3678 39 1 6.2443 7.8397 -1.4490 40 1 4.6828 8.2281 -0.6885 41 1 1.1385 8.6420 -5.0915 42 1 5.0996 5.0247 -3.8605 43 1 4.0213 6.0440 -4.8438 44 1 6.3777 6.3750 -5.5131 45 1 5.7165 7.8638 -4.7961 46 1 7.8421 7.2956 -3.8662 47 1 2.8375 6.4900 -0.6558 48 1 3.2186 4.8263 -1.1651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689208356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:13 Heat of formation + Delta-G solvation = 30.993930 kcal Electronic energy + Delta-G solvation = -31233.437002 eV Core-core repulsion = 27133.308539 eV Total energy + Delta-G solvation = -4100.128464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.30528 -40.93576 -39.12307 -37.68579 -36.43898 -36.22320 -33.91307 -33.43757 -32.34980 -31.67468 -30.94841 -29.09334 -26.68455 -25.98655 -25.59840 -24.35866 -23.61855 -22.73104 -22.27646 -21.45667 -20.28268 -18.62698 -18.38657 -18.15638 -17.53713 -17.26438 -17.06150 -16.69293 -16.48457 -15.94123 -15.71028 -15.43096 -15.32763 -15.11475 -15.02073 -14.79471 -14.37868 -14.13415 -14.10576 -13.87876 -13.77359 -13.40600 -13.27778 -13.12779 -13.01833 -12.87326 -12.61624 -12.31053 -12.13549 -12.09686 -11.93931 -11.61942 -11.55784 -11.40975 -11.34284 -11.27471 -10.84359 -10.68165 -10.49268 -10.37778 -9.61901 -8.63364 -8.18653 -5.43266 0.15697 0.57373 1.15264 1.33490 1.48142 1.57020 1.96577 2.19222 2.47528 3.00506 3.13043 3.33760 3.47321 3.65059 3.76485 3.94852 3.97660 4.05676 4.14306 4.24430 4.27125 4.28688 4.36245 4.45143 4.46967 4.54276 4.56277 4.62747 4.72180 4.74988 4.86277 4.92973 4.99765 5.03551 5.09769 5.11767 5.19440 5.21525 5.30632 5.50692 5.52488 5.62080 5.71658 6.00258 6.26821 6.36379 6.83880 7.04406 7.10059 7.12258 7.72866 8.18841 9.01664 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.004933 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.105197 B = 5674.181535 C = 7298.282282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.347 5.347 4 C 0.116 3.884 5 C -0.129 4.129 6 C 0.602 3.398 7 O -0.567 6.567 8 N -0.592 5.592 9 C 0.110 3.890 10 C -0.116 4.116 11 C -0.114 4.114 12 C 0.182 3.818 13 H 0.054 0.946 14 N -0.595 5.595 15 C -0.239 4.239 16 H 0.046 0.954 17 C -0.002 4.002 18 N -0.932 5.932 19 Si 0.903 3.097 20 H -0.306 1.306 21 H -0.298 1.298 22 H -0.245 1.245 23 C 0.144 3.856 24 C 0.070 3.930 25 O -0.572 6.572 26 C 0.085 3.915 27 N -0.232 5.232 28 N -0.102 5.102 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.028 0.972 46 H 0.383 0.617 47 H 0.046 0.954 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -18.265 10.283 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.132 5.132 4 C -0.042 4.042 5 C -0.269 4.269 6 C 0.389 3.611 7 O -0.447 6.447 8 N -0.323 5.323 9 C -0.012 4.012 10 C -0.155 4.155 11 C -0.153 4.153 12 C 0.074 3.926 13 H 0.072 0.928 14 N -0.316 5.316 15 C -0.368 4.368 16 H 0.064 0.936 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.731 3.269 20 H -0.234 1.234 21 H -0.225 1.225 22 H -0.169 1.169 23 C 0.018 3.982 24 C -0.010 4.010 25 O -0.379 6.379 26 C -0.040 4.040 27 N -0.104 5.104 28 N -0.082 5.082 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.167 0.833 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.231 0.769 47 H 0.065 0.935 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.561 -18.425 9.761 21.344 hybrid contribution -0.247 0.016 -0.402 0.472 sum 4.314 -18.409 9.359 21.098 Atomic orbital electron populations 1.22086 0.92917 1.04971 1.02397 1.22608 0.96816 0.73891 1.07890 1.51040 1.30505 1.13169 1.18491 1.23887 0.91838 0.92498 0.95997 1.21658 1.08711 0.96700 0.99879 1.16986 0.79457 0.80966 0.83663 1.90714 1.52059 1.78663 1.23226 1.48056 1.55121 1.12108 1.16989 1.21795 0.94240 0.89493 0.95643 1.21815 0.96914 1.01565 0.95168 1.21758 0.99648 0.98094 0.95786 1.20606 0.92638 0.94774 0.84532 0.92798 1.44024 1.44967 1.42448 1.00207 1.18410 1.03642 0.97932 1.16822 0.93590 1.25825 0.97574 0.97833 0.98717 1.70090 1.29781 1.28833 1.28880 0.86556 0.79176 0.85465 0.75701 1.23432 1.22530 1.16913 1.21335 0.93050 0.94725 0.89093 1.22647 0.88803 0.99268 0.90277 1.86476 1.27824 1.78415 1.45141 1.22876 0.97524 1.03026 0.80553 1.74639 1.05947 1.18595 1.11220 1.81988 1.21157 0.91289 1.13723 0.93398 0.86886 0.92507 0.86981 0.83283 0.73712 0.91246 0.88365 0.88627 0.91726 0.91797 0.94179 0.93070 0.93144 0.93431 0.92547 0.95409 0.76880 0.93545 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.12 71.98 0.73 -1.03 16 2 C 0.11 1.00 7.26 86.38 0.63 1.62 16 3 N -0.35 -7.36 3.69 -347.09 -1.28 -8.64 16 4 C 0.12 2.50 11.28 83.85 0.95 3.44 16 5 C -0.13 -4.16 6.69 40.82 0.27 -3.89 16 6 C 0.60 20.87 7.67 86.69 0.67 21.54 16 7 O -0.57 -19.89 16.30 -4.03 -0.07 -19.95 16 8 N -0.59 -21.29 2.97 -822.66 -2.45 -23.73 16 9 C 0.11 3.36 6.44 86.36 0.56 3.92 16 10 C -0.12 -3.39 6.08 30.67 0.19 -3.20 16 11 C -0.11 -4.24 5.11 30.62 0.16 -4.09 16 12 C 0.18 7.55 2.32 45.07 0.10 7.65 16 13 H 0.05 2.24 7.78 -2.39 -0.02 2.22 16 14 N -0.59 -28.10 1.92 -677.60 -1.30 -29.40 16 15 C -0.24 -13.23 8.47 84.03 0.71 -12.52 16 16 H 0.05 2.83 7.02 -2.91 -0.02 2.81 16 17 C 0.00 -0.12 5.13 84.86 0.44 0.31 16 18 N -0.93 -57.73 13.97 21.65 0.30 -57.43 16 19 Si 0.90 46.83 26.20 68.60 1.80 48.63 16 20 H -0.31 -16.68 7.11 99.48 0.71 -15.97 16 21 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 22 H -0.25 -12.00 5.66 99.48 0.56 -11.44 16 23 C 0.14 6.23 4.42 86.38 0.38 6.61 16 24 C 0.07 2.57 7.41 71.98 0.53 3.11 16 25 O -0.57 -18.96 12.27 -148.98 -1.83 -20.79 16 26 C 0.09 3.57 5.40 86.36 0.47 4.03 16 27 N -0.23 -8.77 8.80 -50.00 -0.44 -9.21 16 28 N -0.10 -3.39 13.65 37.02 0.51 -2.88 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.15 0.13 8.08 -2.39 -0.02 0.11 16 34 H 0.25 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.10 2.80 7.00 -2.39 -0.02 2.78 16 37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.06 2.45 7.29 -2.39 -0.02 2.43 16 40 H 0.04 1.67 7.04 -2.39 -0.02 1.65 16 41 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.05 2.07 7.90 -2.39 -0.02 2.05 16 43 H 0.05 2.21 4.08 -2.39 -0.01 2.20 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.38 8.80 9.12 -74.06 -0.68 8.12 16 47 H 0.05 2.21 7.50 -2.38 -0.02 2.19 16 48 H 0.11 4.93 4.14 -33.72 -0.14 4.79 16 Total: -1.00 -79.36 380.05 2.05 -77.30 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.04 Total: 18.59 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.77 Total: 27.51 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -4.66 Total: -131.30 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.89 Total: -40.74 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.80 Total: 48.63 kcal Total: -79.36 2.05 -77.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689208356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.298 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds