Wall clock time and date at job start Tue Mar 31 2020 20:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47506 * 2 1 4 4 C 1.35402 * 126.43983 * 264.98027 * 3 2 1 5 5 C 1.35565 * 107.15947 * 180.02562 * 4 3 2 6 6 N 1.33104 * 108.35085 * 359.74320 * 5 4 3 7 7 C 1.31614 * 109.09038 * 0.42933 * 6 5 4 8 8 C 1.47416 * 125.86061 * 179.83475 * 7 6 5 9 9 O 1.21609 * 120.00034 * 179.69017 * 8 7 6 10 10 N 1.34773 * 119.99876 * 359.69402 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.46897 * 110.99787 * 66.04671 * 14 13 12 16 16 C 1.46892 * 111.00055 * 189.99958 * 14 13 12 17 17 C 1.50697 * 109.47311 * 169.99810 * 16 14 13 18 18 O 1.21288 * 119.99851 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00174 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00102 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00063 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99791 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47061 * 90.00449 * 24 22 20 26 26 H 1.48506 * 109.46616 * 210.00298 * 24 22 20 27 27 H 1.48494 * 109.47541 * 330.00196 * 24 22 20 28 28 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46769 * 299.99347 * 1 2 3 30 30 H 1.08994 * 109.47382 * 59.99182 * 1 2 3 31 31 H 1.08999 * 109.46795 * 240.00259 * 2 1 3 32 32 H 1.08993 * 109.47556 * 120.00293 * 2 1 3 33 33 H 1.07995 * 126.41994 * 0.05504 * 4 3 2 34 34 H 1.08001 * 125.82685 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00161 * 359.72172 * 10 8 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 37 37 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 38 38 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 39 39 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 40 40 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 41 41 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 42 42 H 1.08998 * 109.47439 * 59.99845 * 15 14 13 43 43 H 1.09005 * 109.47109 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47456 * 299.99807 * 15 14 13 45 45 H 1.09002 * 109.47666 * 290.00412 * 16 14 13 46 46 H 1.09002 * 109.47241 * 50.00181 * 16 14 13 47 47 H 0.97001 * 120.00067 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00233 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3764 2.1077 -1.0851 5 6 2.7666 3.3269 -0.6391 6 7 2.6446 3.3472 0.6861 7 6 2.1989 2.1784 1.0953 8 6 1.9339 1.7967 2.4943 9 8 1.5160 0.6842 2.7524 10 7 2.1546 2.6808 3.4873 11 6 1.8917 2.3014 4.8778 12 6 2.2291 3.4752 5.7992 13 6 1.9539 3.0791 7.2512 14 7 2.2772 4.2064 8.1360 15 6 1.3672 5.3359 7.9034 16 6 2.2537 3.7930 9.5453 17 6 2.8235 4.8945 10.4015 18 8 3.2106 5.9230 9.8882 19 7 2.9020 4.7373 11.7377 20 6 3.4208 5.7392 12.5166 21 1 3.7663 6.6546 12.0594 22 6 3.5013 5.5773 13.8943 23 7 3.0804 4.4636 14.4507 24 14 4.2076 6.9427 14.9555 25 1 3.1161 7.8574 15.3764 26 1 4.8505 6.3531 16.1574 27 1 5.2177 7.7029 14.1765 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3546 1.7778 -2.1132 34 1 3.1127 4.1442 -1.2546 35 1 2.4917 3.5669 3.2818 36 1 0.8392 2.0416 4.9906 37 1 2.5083 1.4425 5.1428 38 1 3.2816 3.7349 5.6863 39 1 1.6124 4.3340 5.5342 40 1 0.9013 2.8196 7.3639 41 1 2.5702 2.2202 7.5165 42 1 0.3416 5.0222 8.0976 43 1 1.6291 6.1569 8.5710 44 1 1.4561 5.6671 6.8687 45 1 1.2260 3.5922 9.8481 46 1 2.8519 2.8903 9.6693 47 1 2.5920 3.9149 12.1484 48 1 3.1369 4.3504 15.4124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689799703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:28 Heat of formation + Delta-G solvation = -5.466700 kcal Electronic energy + Delta-G solvation = -27856.319735 eV Core-core repulsion = 23754.610220 eV Total energy + Delta-G solvation = -4101.709515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68586 -39.64708 -38.63820 -36.94010 -35.77657 -34.98637 -33.83307 -31.90294 -31.20689 -30.75289 -29.93025 -27.83686 -26.57486 -24.96216 -24.43452 -23.45309 -22.38637 -21.66733 -21.06454 -20.04704 -19.12004 -18.18280 -17.80196 -16.71436 -16.49107 -16.29483 -15.91420 -15.72940 -15.14251 -15.05415 -14.79457 -14.59890 -14.36310 -14.22270 -14.15432 -13.88955 -13.62488 -13.39600 -13.31576 -13.09623 -12.56648 -12.33196 -12.11073 -11.88707 -11.83536 -11.69538 -11.45800 -11.23243 -11.21071 -10.89849 -10.71536 -10.64395 -10.47764 -10.37058 -10.23466 -10.19325 -9.45850 -9.44838 -8.92962 -8.42350 -7.95123 -7.82245 -6.39298 -3.79958 0.98769 2.00965 2.22766 2.91833 3.08650 3.19614 3.28155 3.34276 3.92881 3.94675 4.03731 4.16653 4.26501 4.33715 4.48991 4.75990 4.83163 4.84236 4.94266 4.99580 5.07154 5.11854 5.15472 5.24374 5.27715 5.40899 5.49038 5.58991 5.60428 5.72173 5.76671 5.78173 5.94823 5.99504 6.02159 6.08114 6.15413 6.20670 6.31687 6.48389 6.59683 7.05076 7.29789 7.42313 7.46161 7.57641 7.80522 8.09217 8.64769 9.20843 9.57436 10.09502 10.78516 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.001494 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.228404 B =18735.837090 C =19261.386671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.030 4.030 5 C -0.027 4.027 6 N -0.445 5.445 7 C 0.138 3.862 8 C 0.607 3.393 9 O -0.541 6.541 10 N -0.702 5.702 11 C 0.122 3.878 12 C -0.129 4.129 13 C 0.059 3.941 14 N -0.519 5.519 15 C 0.020 3.980 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.013 0.987 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -10.461 -30.092 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.168 4.168 5 C -0.180 4.180 6 N -0.167 5.167 7 C -0.121 4.121 8 C 0.390 3.610 9 O -0.418 6.418 10 N -0.353 5.353 11 C -0.001 4.001 12 C -0.167 4.167 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.128 4.128 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.200 0.800 34 H 0.196 0.804 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.915 -10.001 -29.527 31.560 hybrid contribution -0.691 -0.431 0.236 0.848 sum -5.606 -10.432 -29.292 31.595 Atomic orbital electron populations 1.22065 0.93437 1.03530 1.03036 1.22145 0.96420 0.78683 1.05424 1.45290 1.45014 1.12957 1.06107 1.22951 1.06639 0.94096 0.93131 1.22452 1.07081 0.97534 0.90975 1.70211 1.15160 1.18511 1.12780 1.22638 1.10603 0.88558 0.90288 1.16432 0.77975 0.84508 0.82039 1.90806 1.46717 1.20632 1.83650 1.45672 1.65981 1.17414 1.06250 1.21433 1.01673 0.98306 0.78733 1.21787 1.03743 0.97294 0.93871 1.21992 0.99023 0.94123 0.91876 1.61534 1.52654 1.06599 1.03468 1.22584 0.92177 0.95443 1.02603 1.21863 0.99935 0.98484 0.88273 1.19744 0.85310 0.89093 0.82882 1.90481 1.52975 1.29991 1.72691 1.41870 1.55342 1.18231 1.04746 1.19703 1.37135 0.97745 0.88221 0.87914 1.25256 0.97723 0.97767 0.97220 1.69612 1.47340 1.25362 1.12070 0.85859 0.79089 0.80311 0.79032 1.20468 1.20960 1.19416 0.90217 0.91321 0.92255 0.88925 0.87150 0.80021 0.80441 0.74974 0.91118 0.90840 0.89907 0.90872 0.94872 0.90558 0.96808 0.88627 0.92015 0.93469 0.89375 0.77503 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.23 37.15 0.38 -0.56 16 2 C 0.09 0.58 6.18 -4.04 -0.02 0.55 16 3 N -0.41 -3.40 2.76 -114.59 -0.32 -3.72 16 4 C -0.03 -0.19 11.53 -16.93 -0.20 -0.39 16 5 C -0.03 -0.22 11.85 -17.96 -0.21 -0.43 16 6 N -0.44 -4.76 10.90 -11.25 -0.12 -4.89 16 7 C 0.14 1.47 7.78 -154.52 -1.20 0.27 16 8 C 0.61 6.89 7.81 -12.53 -0.10 6.79 16 9 O -0.54 -6.96 14.51 5.27 0.08 -6.88 16 10 N -0.70 -7.00 5.55 -61.38 -0.34 -7.34 16 11 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 12 C -0.13 -1.32 5.25 -26.73 -0.14 -1.46 16 13 C 0.06 0.71 4.96 -3.82 -0.02 0.70 16 14 N -0.52 -8.53 4.50 -244.38 -1.10 -9.63 16 15 C 0.02 0.32 8.96 60.06 0.54 0.86 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.51 7.48 -10.99 -0.08 10.43 16 18 O -0.58 -15.54 13.91 5.55 0.08 -15.46 16 19 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.31 8.13 -51.93 -0.42 -0.12 16 32 H 0.11 0.84 6.64 -51.93 -0.34 0.49 16 33 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.41 3.82 8.15 -40.82 -0.33 3.49 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 40 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 44 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -34.16 399.72 -8.77 -42.94 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.37 Total: 10.49 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -1.35 Total: 10.70 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -1.21 Total: -63.91 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.15 Total: -22.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.16 -8.77 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689799703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.470 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds