Wall clock time and date at job start Tue Mar 31 2020 20:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46503 * 109.47506 * 2 1 4 4 C 1.35402 * 126.43983 * 264.98027 * 3 2 1 5 5 C 1.35565 * 107.15947 * 180.02562 * 4 3 2 6 6 N 1.33104 * 108.35085 * 359.74320 * 5 4 3 7 7 C 1.31614 * 109.09038 * 0.42933 * 6 5 4 8 8 C 1.47416 * 125.86061 * 179.83475 * 7 6 5 9 9 O 1.21609 * 120.00034 * 179.69017 * 8 7 6 10 10 N 1.34773 * 119.99876 * 359.69402 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.46897 * 110.99787 * 66.04671 * 14 13 12 16 16 C 1.46892 * 111.00055 * 189.99958 * 14 13 12 17 17 C 1.50697 * 109.47311 * 169.99810 * 16 14 13 18 18 O 1.21288 * 119.99851 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00174 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00102 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00063 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99791 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47061 * 90.00449 * 24 22 20 26 26 H 1.48506 * 109.46616 * 210.00298 * 24 22 20 27 27 H 1.48494 * 109.47541 * 330.00196 * 24 22 20 28 28 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46769 * 299.99347 * 1 2 3 30 30 H 1.08994 * 109.47382 * 59.99182 * 1 2 3 31 31 H 1.08999 * 109.46795 * 240.00259 * 2 1 3 32 32 H 1.08993 * 109.47556 * 120.00293 * 2 1 3 33 33 H 1.07995 * 126.41994 * 0.05504 * 4 3 2 34 34 H 1.08001 * 125.82685 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00161 * 359.72172 * 10 8 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 37 37 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 38 38 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 39 39 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 40 40 H 1.09000 * 109.47441 * 299.99910 * 13 12 11 41 41 H 1.08994 * 109.47235 * 60.00181 * 13 12 11 42 42 H 1.08998 * 109.47439 * 59.99845 * 15 14 13 43 43 H 1.09005 * 109.47109 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47456 * 299.99807 * 15 14 13 45 45 H 1.09002 * 109.47666 * 290.00412 * 16 14 13 46 46 H 1.09002 * 109.47241 * 50.00181 * 16 14 13 47 47 H 0.97001 * 120.00067 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00233 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3764 2.1077 -1.0851 5 6 2.7666 3.3269 -0.6391 6 7 2.6446 3.3472 0.6861 7 6 2.1989 2.1784 1.0953 8 6 1.9339 1.7967 2.4943 9 8 1.5160 0.6842 2.7524 10 7 2.1546 2.6808 3.4873 11 6 1.8917 2.3014 4.8778 12 6 2.2291 3.4752 5.7992 13 6 1.9539 3.0791 7.2512 14 7 2.2772 4.2064 8.1360 15 6 1.3672 5.3359 7.9034 16 6 2.2537 3.7930 9.5453 17 6 2.8235 4.8945 10.4015 18 8 3.2106 5.9230 9.8882 19 7 2.9020 4.7373 11.7377 20 6 3.4208 5.7392 12.5166 21 1 3.7663 6.6546 12.0594 22 6 3.5013 5.5773 13.8943 23 7 3.0804 4.4636 14.4507 24 14 4.2076 6.9427 14.9555 25 1 3.1161 7.8574 15.3764 26 1 4.8505 6.3531 16.1574 27 1 5.2177 7.7029 14.1765 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3546 1.7778 -2.1132 34 1 3.1127 4.1442 -1.2546 35 1 2.4917 3.5669 3.2818 36 1 0.8392 2.0416 4.9906 37 1 2.5083 1.4425 5.1428 38 1 3.2816 3.7349 5.6863 39 1 1.6124 4.3340 5.5342 40 1 0.9013 2.8196 7.3639 41 1 2.5702 2.2202 7.5165 42 1 0.3416 5.0222 8.0976 43 1 1.6291 6.1569 8.5710 44 1 1.4561 5.6671 6.8687 45 1 1.2260 3.5922 9.8481 46 1 2.8519 2.8903 9.6693 47 1 2.5920 3.9149 12.1484 48 1 3.1369 4.3504 15.4124 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689799703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:27 Heat of formation + Delta-G solvation = -30.973874 kcal Electronic energy + Delta-G solvation = -27857.425809 eV Core-core repulsion = 23754.610220 eV Total energy + Delta-G solvation = -4102.815589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28956 -40.52203 -40.29621 -38.26888 -36.57180 -35.93114 -35.63243 -33.27794 -32.80503 -31.34235 -30.58666 -29.31961 -27.64110 -26.61792 -25.20598 -24.37944 -23.26273 -22.25822 -22.06700 -20.95541 -20.82964 -19.83513 -18.81974 -17.85183 -17.40638 -17.14633 -17.02030 -16.63575 -16.55549 -16.35136 -16.02650 -15.61772 -15.46791 -15.36139 -15.03820 -14.81550 -14.72200 -14.69440 -14.43890 -13.73603 -13.62540 -13.46787 -13.35259 -13.02310 -13.01667 -12.82168 -12.71414 -12.50906 -12.38372 -12.34069 -12.31633 -12.11028 -11.64990 -11.44258 -11.41377 -11.18129 -10.85435 -10.27679 -10.24731 -9.97987 -9.51822 -9.17446 -8.44812 -5.93284 0.30983 1.38947 1.41177 1.42558 1.55354 1.61206 2.08080 2.21559 2.31049 2.35273 2.81853 3.22147 3.29517 3.44894 3.73361 3.83744 3.96239 4.03173 4.04763 4.14297 4.33225 4.33843 4.40356 4.42020 4.47720 4.50386 4.56652 4.62053 4.62418 4.71543 4.75464 4.78886 4.80098 5.07445 5.13117 5.19033 5.23588 5.26210 5.36002 5.42960 5.65765 5.90734 5.92065 6.09449 6.24432 6.29421 6.63142 6.80247 7.03274 7.15241 7.59089 8.15274 8.72628 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.001494 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.228404 B =18735.837090 C =19261.386671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.049 4.049 6 N -0.468 5.468 7 C 0.101 3.899 8 C 0.602 3.398 9 O -0.564 6.564 10 N -0.699 5.699 11 C 0.130 3.870 12 C -0.116 4.116 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.025 3.975 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.274 1.274 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.201 0.799 35 H 0.417 0.583 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.029 0.971 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 -11.526 -31.999 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.190 5.190 7 C -0.157 4.157 8 C 0.387 3.613 9 O -0.443 6.443 10 N -0.350 5.350 11 C 0.007 3.993 12 C -0.154 4.154 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.123 4.123 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.109 0.891 33 H 0.243 0.757 34 H 0.218 0.782 35 H 0.253 0.747 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.128 0.872 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.248 -11.089 -31.426 33.736 hybrid contribution -0.596 -0.104 0.677 0.908 sum -5.844 -11.193 -30.749 33.241 Atomic orbital electron populations 1.22017 0.93249 1.04253 1.01919 1.22301 0.96528 0.77824 1.06232 1.45526 1.44398 1.13528 1.05964 1.23672 1.03662 0.93096 0.94279 1.23013 1.07699 0.99178 0.90326 1.70145 1.15484 1.18909 1.14475 1.22480 1.13164 0.89497 0.90516 1.16636 0.77605 0.84288 0.82739 1.90779 1.47943 1.21457 1.84144 1.45655 1.65685 1.17415 1.06246 1.21324 1.01700 0.97825 0.78465 1.21636 1.03283 0.97555 0.92959 1.22069 1.00188 0.92864 0.91687 1.61485 1.53565 1.08176 1.03086 1.22459 0.92836 0.94311 1.02712 1.21742 1.00854 0.96514 0.88285 1.20809 0.83801 0.89875 0.82682 1.90460 1.54211 1.32022 1.73331 1.41941 1.55923 1.17979 1.05472 1.19664 1.39155 0.98062 0.89332 0.90337 1.26025 0.97510 1.00011 0.97745 1.69672 1.47416 1.26473 1.12654 0.84929 0.78388 0.77622 0.77397 1.19664 1.19580 1.19842 0.88613 0.94415 0.91224 0.85332 0.89087 0.75749 0.78246 0.74651 0.90942 0.90948 0.90672 0.90614 0.93336 0.89494 0.95282 0.92806 0.90026 0.91484 0.87174 0.77050 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.23 71.98 0.74 -0.87 16 2 C 0.09 0.97 6.18 86.38 0.53 1.51 16 3 N -0.41 -6.23 2.76 -516.45 -1.42 -7.65 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.70 11.85 83.88 0.99 0.30 16 6 N -0.47 -9.83 10.90 -189.52 -2.06 -11.89 16 7 C 0.10 2.14 7.78 136.28 1.06 3.20 16 8 C 0.60 13.92 7.81 86.66 0.68 14.59 16 9 O -0.56 -14.84 14.51 -4.06 -0.06 -14.90 16 10 N -0.70 -13.97 5.55 -466.38 -2.59 -16.56 16 11 C 0.13 2.40 5.67 86.38 0.49 2.89 16 12 C -0.12 -2.25 5.25 30.59 0.16 -2.09 16 13 C 0.06 1.34 4.96 86.30 0.43 1.77 16 14 N -0.54 -17.15 4.50 -927.07 -4.17 -21.32 16 15 C 0.02 0.78 8.96 127.69 1.14 1.93 16 16 C 0.06 1.99 5.45 85.56 0.47 2.45 16 17 C 0.44 21.20 7.48 87.66 0.66 21.86 16 18 O -0.61 -34.16 13.91 -3.06 -0.04 -34.20 16 19 N -0.58 -29.86 5.29 -306.99 -1.62 -31.48 16 20 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 24 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.04 0.63 7.85 -2.38 -0.02 0.61 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 0.42 8.13 -2.39 -0.02 0.40 16 32 H 0.09 1.36 6.64 -2.39 -0.02 1.34 16 33 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.42 7.76 8.15 -92.70 -0.76 7.01 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.44 6.55 -2.39 -0.02 1.42 16 40 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.09 1.78 7.93 -2.39 -0.02 1.76 16 42 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 2.18 5.82 -2.38 -0.01 2.16 16 44 H 0.08 2.20 6.47 -2.38 -0.02 2.19 16 45 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 46 H 0.11 3.35 7.93 -2.39 -0.02 3.34 16 47 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 48 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -76.52 399.72 -0.57 -77.10 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.50 Total: 35.42 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 9.59 Total: 29.90 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -11.59 Total: -138.71 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.10 Total: -49.10 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.52 -0.57 -77.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689799703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.121 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds