Wall clock time and date at job start Tue Mar 31 2020 20:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 C 1.39864 * 125.89992 * 124.71673 * 10 9 8 12 12 C 1.35316 * 107.91987 * 179.86959 * 11 10 9 13 13 N 1.34954 * 107.74571 * 0.39067 * 12 11 10 14 14 C 1.46500 * 126.03525 * 179.75375 * 13 12 11 15 15 N 1.30838 * 125.89489 * 305.02652 * 10 9 8 16 16 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 17 17 C 1.46903 * 110.99854 * 275.00026 * 16 2 1 18 18 C 1.50706 * 109.46788 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99769 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99565 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99800 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00230 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00440 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99595 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00614 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47054 * 59.99527 * 25 23 21 27 27 H 1.48498 * 109.47226 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.46844 * 299.99834 * 25 23 21 29 29 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 33 33 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 36 36 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 37 37 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 38 38 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 39 39 H 1.07996 * 126.04062 * 359.97438 * 11 10 9 40 40 H 1.08007 * 126.12764 * 180.14939 * 12 11 10 41 41 H 1.09000 * 109.46564 * 269.97609 * 14 13 12 42 42 H 1.08994 * 109.47147 * 29.97750 * 14 13 12 43 43 H 1.08996 * 109.46695 * 149.97726 * 14 13 12 44 44 H 1.00901 * 110.99482 * 151.05012 * 16 2 1 45 45 H 1.09001 * 109.47321 * 299.99877 * 17 16 2 46 46 H 1.08999 * 109.46905 * 60.00434 * 17 16 2 47 47 H 0.96997 * 120.00270 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 6 6.1838 -2.2732 -3.3712 10 6 7.6851 -2.3874 -3.3075 11 6 8.4220 -3.5727 -3.3983 12 6 9.7340 -3.2558 -3.3006 13 7 9.8236 -1.9183 -3.1444 14 6 11.0613 -1.1493 -2.9937 15 7 8.5240 -1.3954 -3.1520 16 7 2.0196 -0.6924 1.1996 17 6 2.0823 0.2229 2.3470 18 6 2.5883 -0.5212 3.5559 19 8 2.8685 -1.6982 3.4702 20 7 2.7283 0.1210 4.7325 21 6 3.1880 -0.5559 5.8324 22 1 3.4384 -1.6037 5.7560 23 6 3.3320 0.1060 7.0456 24 7 3.0279 1.3811 7.1385 25 14 3.9591 -0.8161 8.5442 26 1 5.3158 -1.3512 8.2643 27 1 4.0207 0.1086 9.7045 28 1 3.0386 -1.9391 8.8553 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.7518 -0.1585 -2.1369 33 1 1.6055 -1.7199 -1.2949 34 1 3.9825 -0.4627 -0.4313 35 1 6.1124 -0.5505 -2.0802 36 1 5.9587 -2.1092 -1.2348 37 1 5.7455 -3.2702 -3.4159 38 1 5.8992 -1.7110 -4.2607 39 1 8.0159 -4.5652 -3.5258 40 1 10.5610 -3.9495 -3.3368 41 1 11.3155 -1.0738 -1.9365 42 1 11.8685 -1.6517 -3.5266 43 1 10.9206 -0.1501 -3.4058 44 1 2.9173 -1.1204 1.0290 45 1 2.7588 1.0464 2.1183 46 1 1.0869 0.6165 2.5525 47 1 2.5038 1.0622 4.8011 48 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690581894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:18 Heat of formation + Delta-G solvation = -0.491286 kcal Electronic energy + Delta-G solvation = -27912.629613 eV Core-core repulsion = 23811.135847 eV Total energy + Delta-G solvation = -4101.493765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42580 -39.88484 -38.43440 -37.00827 -34.80119 -34.11818 -33.70251 -32.19314 -31.31280 -30.80644 -30.21693 -27.74009 -26.63286 -25.96725 -24.20159 -23.73181 -21.43340 -20.66083 -20.45712 -19.70265 -19.30232 -17.94696 -17.50109 -17.01794 -16.33266 -16.12206 -15.91302 -15.56296 -15.38800 -15.05739 -14.51530 -14.43419 -14.11149 -13.98345 -13.89494 -13.62983 -13.40177 -13.04401 -12.92483 -12.80506 -12.55372 -12.43642 -12.28989 -12.13166 -11.89923 -11.72793 -11.65017 -11.43950 -11.40676 -11.06993 -10.85021 -10.74633 -10.45795 -10.23135 -9.95851 -9.52060 -9.46077 -9.16305 -8.81612 -8.48917 -8.13585 -7.98375 -6.43631 -3.84550 1.61762 2.23528 2.51922 2.58972 3.10120 3.18692 3.24571 3.28967 3.87836 4.04021 4.17223 4.27280 4.45589 4.55644 4.68314 4.77676 4.81000 4.88546 4.97889 5.01198 5.04038 5.19389 5.23860 5.30531 5.33577 5.43746 5.52220 5.55927 5.68752 5.69299 5.77971 5.78166 5.88280 5.90247 5.95454 5.99776 6.19528 6.27055 6.38237 6.42751 6.72623 7.15159 7.34966 7.47335 7.53191 7.57523 8.03876 8.12703 8.58954 9.15751 9.51888 10.03267 10.73948 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.002245 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.618229 B =12470.139977 C =15166.856155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.048 0.952 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.518 3.482 7 O -0.543 6.543 8 C -0.136 4.136 9 C -0.020 4.020 10 C 0.076 3.924 11 C -0.267 4.267 12 C 0.052 3.948 13 N -0.379 5.379 14 C 0.102 3.898 15 N -0.294 5.294 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.347 0.653 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.338 -1.448 -21.274 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.385 5.385 6 C 0.305 3.695 7 O -0.420 6.420 8 C -0.177 4.177 9 C -0.059 4.059 10 C -0.090 4.090 11 C -0.296 4.296 12 C -0.094 4.094 13 N -0.161 5.161 14 C -0.040 4.040 15 N -0.117 5.117 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.779 -1.344 -21.510 23.667 hybrid contribution 1.270 0.095 1.094 1.679 sum 11.049 -1.249 -20.416 23.248 Atomic orbital electron populations 1.21737 0.93415 1.02962 1.01518 1.21815 0.97125 0.95927 0.89066 0.93369 1.21595 0.79429 1.01998 0.97533 1.46088 1.08147 1.60160 1.24130 1.20625 0.89992 0.76990 0.81911 1.90696 1.70521 1.47633 1.33179 1.21628 0.91670 1.03721 1.00688 1.19726 0.85583 1.02713 0.97907 1.22334 0.96289 0.91186 0.99236 1.21456 0.92063 0.99675 1.16422 1.22544 0.99190 0.85765 1.01910 1.48515 1.05919 1.05342 1.56320 1.21852 0.81697 0.97315 1.03124 1.77307 0.86968 1.22303 1.25109 1.60130 1.34833 1.32245 1.02714 1.21758 1.01487 0.93794 0.91299 1.19799 0.85071 0.88219 0.84464 1.90530 1.55319 1.16079 1.84741 1.41855 1.57690 1.12436 1.07951 1.19651 1.40049 0.96441 0.86811 0.87974 1.25264 0.97627 0.95780 0.99242 1.69605 1.48569 1.08855 1.27278 0.85916 0.79425 0.78856 0.80021 1.19914 1.20973 1.19858 0.92016 0.92497 0.91507 0.90866 0.90318 0.76522 0.88318 0.88393 0.89011 0.89457 0.83378 0.80964 0.90656 0.89558 0.89322 0.83132 0.93866 0.89394 0.77461 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 2 C 0.07 0.84 2.81 -67.71 -0.19 0.65 16 3 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 4 C 0.12 1.36 5.31 -4.04 -0.02 1.34 16 5 N -0.73 -8.27 4.99 -60.30 -0.30 -8.57 16 6 C 0.52 6.34 7.83 -10.98 -0.09 6.26 16 7 O -0.54 -8.31 15.98 5.55 0.09 -8.22 16 8 C -0.14 -1.39 5.66 -27.89 -0.16 -1.54 16 9 C -0.02 -0.20 5.08 -27.89 -0.14 -0.34 16 10 C 0.08 0.83 6.49 -82.41 -0.53 0.30 16 11 C -0.27 -2.53 10.72 -40.01 -0.43 -2.95 16 12 C 0.05 0.42 11.49 -17.22 -0.20 0.22 16 13 N -0.38 -3.50 4.01 -68.16 -0.27 -3.77 16 14 C 0.10 0.51 11.47 59.85 0.69 1.20 16 15 N -0.29 -3.48 12.54 33.67 0.42 -3.06 16 16 N -0.66 -10.28 5.93 -107.98 -0.64 -10.92 16 17 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 18 C 0.44 10.18 7.82 -10.98 -0.09 10.09 16 19 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 20 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.11 7.37 -40.82 -0.30 3.81 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.09 0.93 8.10 -51.92 -0.42 0.51 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.35 5.53 6.41 -39.29 -0.25 5.27 16 45 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 46 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -35.55 407.15 -7.39 -42.94 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -7.47 Total: 15.92 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -1.08 Total: 6.91 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -0.13 Total: -64.07 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.18 Total: -23.76 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.55 -7.39 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690581894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.449 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds