Wall clock time and date at job start Tue Mar 31 2020 20:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 C 1.39867 * 125.89691 * 124.70963 * 10 9 8 12 12 C 1.35321 * 107.91926 * 179.86545 * 11 10 9 13 13 N 1.34948 * 107.74238 * 0.40303 * 12 11 10 14 14 C 1.46501 * 126.03397 * 179.74845 * 13 12 11 15 15 N 1.30840 * 125.90014 * 305.02996 * 10 9 8 16 16 N 1.46906 * 109.47133 * 239.99822 * 2 1 3 17 17 C 1.46900 * 110.99628 * 85.00130 * 16 2 1 18 18 C 1.50695 * 109.46812 * 180.02562 * 17 16 2 19 19 O 1.21300 * 120.00382 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00008 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00097 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99627 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99684 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47306 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47337 * 119.99917 * 25 23 21 28 28 H 1.48504 * 109.47200 * 239.99864 * 25 23 21 29 29 H 1.09001 * 109.47386 * 300.00185 * 1 2 3 30 30 H 1.08998 * 109.47347 * 59.99643 * 1 2 3 31 31 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 33 33 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 36 36 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 37 37 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 38 38 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 39 39 H 1.07999 * 126.04393 * 359.97438 * 11 10 9 40 40 H 1.07997 * 126.13087 * 180.14855 * 12 11 10 41 41 H 1.09001 * 109.47321 * 269.96977 * 14 13 12 42 42 H 1.08999 * 109.47592 * 29.97175 * 14 13 12 43 43 H 1.09006 * 109.47200 * 149.97459 * 14 13 12 44 44 H 1.00892 * 111.00038 * 208.96088 * 16 2 1 45 45 H 1.09001 * 109.46958 * 300.00093 * 17 16 2 46 46 H 1.09000 * 109.47239 * 60.00122 * 17 16 2 47 47 H 0.96993 * 119.99819 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99652 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1725 -1.4338 2.1883 7 8 3.5693 -1.8887 3.1371 8 6 5.6738 -1.5474 2.1249 9 6 6.1834 -2.2731 3.3717 10 6 7.6848 -2.3873 3.3082 11 6 8.5832 -1.9408 4.2827 12 6 9.8353 -2.2286 3.8578 13 7 9.7332 -2.8276 2.6529 14 6 10.8479 -3.3017 1.8290 15 7 8.3732 -2.9160 2.3292 16 7 2.0196 -0.6926 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5873 -0.5218 -3.5560 19 8 2.8677 -1.6989 -3.4702 20 7 2.7282 0.1205 -4.7325 21 6 3.1870 -0.5569 -5.8327 22 1 3.4359 -1.6051 -5.7564 23 6 3.3318 0.1051 -7.0457 24 7 3.0285 1.3803 -7.1384 25 14 3.9576 -0.8176 -8.5444 26 1 4.2252 -2.2319 -8.1790 27 1 2.9333 -0.7698 -9.6185 28 1 5.2113 -0.1849 -9.0275 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7199 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9823 -0.4629 0.4315 35 1 5.9585 -2.1094 1.2353 36 1 6.1122 -0.5505 2.0806 37 1 5.8988 -1.7109 4.2612 38 1 5.7451 -3.2701 3.4165 39 1 8.3235 -1.4541 5.2112 40 1 10.7523 -2.0134 4.3862 41 1 11.1740 -2.5021 1.1639 42 1 11.6754 -3.5986 2.4732 43 1 10.5236 -4.1574 1.2365 44 1 2.9172 -1.1206 -1.0287 45 1 1.0870 0.6163 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5043 1.0617 -4.8010 48 1 3.1299 1.8426 -7.9852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690581895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:21 Heat of formation + Delta-G solvation = -0.438577 kcal Electronic energy + Delta-G solvation = -27934.474794 eV Core-core repulsion = 23832.983315 eV Total energy + Delta-G solvation = -4101.491480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42697 -39.88513 -38.43200 -37.00711 -34.79554 -34.11649 -33.70128 -32.18536 -31.30979 -30.80539 -30.21930 -27.73484 -26.63088 -25.96382 -24.20000 -23.73095 -21.43355 -20.66179 -20.45707 -19.70284 -19.30126 -17.94414 -17.49867 -17.01214 -16.33953 -16.17234 -15.71376 -15.69690 -15.37050 -15.09921 -14.50248 -14.39323 -14.11059 -13.99978 -13.88952 -13.60743 -13.43904 -13.02670 -12.90848 -12.80075 -12.54860 -12.39844 -12.33880 -12.12722 -11.89722 -11.72817 -11.64889 -11.43572 -11.40296 -11.10528 -10.85382 -10.72857 -10.35520 -10.23982 -9.95880 -9.53786 -9.45919 -9.16372 -8.82198 -8.48566 -8.13342 -7.98053 -6.43643 -3.84348 1.62394 2.24649 2.51567 2.58527 3.10137 3.15060 3.25875 3.33284 3.88055 4.04147 4.18625 4.27652 4.44639 4.56032 4.68355 4.80487 4.81329 4.87492 4.98755 5.01256 5.08098 5.18914 5.23899 5.30046 5.32662 5.45752 5.49608 5.56445 5.66773 5.68753 5.77891 5.78057 5.88476 5.91079 5.95426 5.99813 6.19649 6.27164 6.38212 6.42496 6.72928 7.15441 7.34926 7.48595 7.53900 7.57811 8.04681 8.12662 8.59174 9.16262 9.52227 10.03535 10.74135 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.002297 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.287278 B =12185.653599 C =15162.577038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.048 0.952 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.518 3.482 7 O -0.543 6.543 8 C -0.136 4.136 9 C -0.020 4.020 10 C 0.074 3.926 11 C -0.269 4.269 12 C 0.051 3.949 13 N -0.378 5.378 14 C 0.101 3.899 15 N -0.290 5.290 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.348 0.652 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 -0.235 21.967 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.385 5.385 6 C 0.305 3.695 7 O -0.420 6.420 8 C -0.177 4.177 9 C -0.059 4.059 10 C -0.092 4.092 11 C -0.298 4.298 12 C -0.095 4.095 13 N -0.160 5.160 14 C -0.041 4.041 15 N -0.113 5.113 16 N -0.300 5.300 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.165 0.835 40 H 0.190 0.810 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.169 0.831 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.724 -2.112 21.143 23.367 hybrid contribution 1.396 1.451 -0.370 2.047 sum 11.120 -0.661 20.773 23.571 Atomic orbital electron populations 1.21734 0.93421 1.02965 1.01515 1.21812 0.97122 0.95910 0.89071 0.93375 1.21599 0.79436 1.02005 0.97527 1.46088 1.08148 1.60168 1.24122 1.20624 0.90006 0.76969 0.81917 1.90696 1.70516 1.47576 1.33235 1.21629 0.91632 1.03377 1.01071 1.19724 0.85743 1.02463 0.98005 1.22342 0.96666 0.97654 0.92553 1.21432 0.91296 1.13426 1.03646 1.22535 1.00119 0.98578 0.88287 1.48542 1.05585 1.46500 1.15354 1.21870 0.85662 1.01222 0.95314 1.77375 0.86263 1.24351 1.23271 1.60120 1.34874 1.32241 1.02716 1.21754 1.01487 0.93787 0.91297 1.19807 0.85029 0.88221 0.84469 1.90538 1.55226 1.16080 1.84738 1.41873 1.57759 1.12412 1.07980 1.19755 1.39821 0.96442 0.86761 0.87862 1.25264 0.97678 0.95789 0.99252 1.69620 1.48724 1.08861 1.27105 0.85803 0.78220 0.79649 0.80700 1.19196 1.20727 1.20777 0.92501 0.92014 0.91509 0.90332 0.90851 0.76524 0.87926 0.88791 0.89161 0.89313 0.83479 0.81015 0.90638 0.89559 0.89162 0.83102 0.89399 0.93863 0.77477 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 2 C 0.07 0.84 2.81 -67.71 -0.19 0.65 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 4 C 0.12 1.36 5.31 -4.04 -0.02 1.34 16 5 N -0.73 -8.26 4.99 -60.29 -0.30 -8.56 16 6 C 0.52 6.34 7.83 -10.99 -0.09 6.26 16 7 O -0.54 -8.30 15.98 5.55 0.09 -8.22 16 8 C -0.14 -1.38 5.66 -27.88 -0.16 -1.54 16 9 C -0.02 -0.20 5.08 -27.88 -0.14 -0.34 16 10 C 0.07 0.82 6.49 -82.40 -0.53 0.28 16 11 C -0.27 -2.44 10.72 -40.01 -0.43 -2.87 16 12 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 13 N -0.38 -3.57 4.01 -68.16 -0.27 -3.84 16 14 C 0.10 0.55 11.47 59.85 0.69 1.24 16 15 N -0.29 -3.57 12.54 33.67 0.42 -3.15 16 16 N -0.66 -10.34 5.93 -107.99 -0.64 -10.97 16 17 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 18 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 19 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 20 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.10 7.37 -40.82 -0.30 3.80 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.35 5.58 6.41 -39.30 -0.25 5.33 16 45 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 46 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -35.79 407.15 -7.39 -43.18 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -7.47 Total: 15.85 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.08 Total: 7.04 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.13 Total: -64.34 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.18 Total: -23.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.79 -7.39 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690581895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.745 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds