Wall clock time and date at job start Tue Mar 31 2020 20:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47522 * 179.97438 * 9 8 6 11 11 C 1.39867 * 125.89691 * 124.70963 * 10 9 8 12 12 C 1.35321 * 107.91926 * 179.86545 * 11 10 9 13 13 N 1.34948 * 107.74238 * 0.40303 * 12 11 10 14 14 C 1.46501 * 126.03397 * 179.74845 * 13 12 11 15 15 N 1.30840 * 125.90014 * 305.02996 * 10 9 8 16 16 N 1.46906 * 109.47133 * 239.99822 * 2 1 3 17 17 C 1.46900 * 110.99628 * 85.00130 * 16 2 1 18 18 C 1.50695 * 109.46812 * 180.02562 * 17 16 2 19 19 O 1.21300 * 120.00382 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00008 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00097 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99627 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99684 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47306 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47337 * 119.99917 * 25 23 21 28 28 H 1.48504 * 109.47200 * 239.99864 * 25 23 21 29 29 H 1.09001 * 109.47386 * 300.00185 * 1 2 3 30 30 H 1.08998 * 109.47347 * 59.99643 * 1 2 3 31 31 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 33 33 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 36 36 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 37 37 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 38 38 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 39 39 H 1.07999 * 126.04393 * 359.97438 * 11 10 9 40 40 H 1.07997 * 126.13087 * 180.14855 * 12 11 10 41 41 H 1.09001 * 109.47321 * 269.96977 * 14 13 12 42 42 H 1.08999 * 109.47592 * 29.97175 * 14 13 12 43 43 H 1.09006 * 109.47200 * 149.97459 * 14 13 12 44 44 H 1.00892 * 111.00038 * 208.96088 * 16 2 1 45 45 H 1.09001 * 109.46958 * 300.00093 * 17 16 2 46 46 H 1.09000 * 109.47239 * 60.00122 * 17 16 2 47 47 H 0.96993 * 119.99819 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99652 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1725 -1.4338 2.1883 7 8 3.5693 -1.8887 3.1371 8 6 5.6738 -1.5474 2.1249 9 6 6.1834 -2.2731 3.3717 10 6 7.6848 -2.3873 3.3082 11 6 8.5832 -1.9408 4.2827 12 6 9.8353 -2.2286 3.8578 13 7 9.7332 -2.8276 2.6529 14 6 10.8479 -3.3017 1.8290 15 7 8.3732 -2.9160 2.3292 16 7 2.0196 -0.6926 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5873 -0.5218 -3.5560 19 8 2.8677 -1.6989 -3.4702 20 7 2.7282 0.1205 -4.7325 21 6 3.1870 -0.5569 -5.8327 22 1 3.4359 -1.6051 -5.7564 23 6 3.3318 0.1051 -7.0457 24 7 3.0285 1.3803 -7.1384 25 14 3.9576 -0.8176 -8.5444 26 1 4.2252 -2.2319 -8.1790 27 1 2.9333 -0.7698 -9.6185 28 1 5.2113 -0.1849 -9.0275 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7199 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9823 -0.4629 0.4315 35 1 5.9585 -2.1094 1.2353 36 1 6.1122 -0.5505 2.0806 37 1 5.8988 -1.7109 4.2612 38 1 5.7451 -3.2701 3.4165 39 1 8.3235 -1.4541 5.2112 40 1 10.7523 -2.0134 4.3862 41 1 11.1740 -2.5021 1.1639 42 1 11.6754 -3.5986 2.4732 43 1 10.5236 -4.1574 1.2365 44 1 2.9172 -1.1206 -1.0287 45 1 1.0870 0.6163 -2.5525 46 1 2.7588 1.0462 -2.1182 47 1 2.5043 1.0617 -4.8010 48 1 3.1299 1.8426 -7.9852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690581895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:19 Heat of formation + Delta-G solvation = -28.228961 kcal Electronic energy + Delta-G solvation = -27935.679876 eV Core-core repulsion = 23832.983315 eV Total energy + Delta-G solvation = -4102.696561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.10280 -40.90465 -40.15558 -38.24358 -35.99105 -35.53232 -34.94239 -33.29099 -32.90518 -31.96787 -30.91427 -28.50461 -28.10213 -26.93363 -25.73228 -24.70592 -22.06369 -21.66945 -21.40693 -21.10096 -20.44337 -19.92496 -18.46488 -17.90167 -17.52875 -17.16199 -16.97812 -16.68812 -16.53125 -16.32073 -16.14712 -15.65110 -15.36833 -14.99465 -14.83367 -14.69171 -14.38837 -14.28776 -13.75081 -13.68194 -13.51588 -13.47064 -13.33639 -13.24384 -13.06649 -12.92578 -12.88570 -12.75932 -12.55740 -12.40029 -12.22265 -12.12224 -11.86785 -11.51753 -11.47132 -10.96997 -10.34846 -10.20126 -10.14020 -10.01600 -9.47438 -9.37100 -8.47370 -5.95683 0.96838 1.35849 1.41521 1.55414 1.59749 1.69430 1.80259 2.04768 2.19174 2.28732 2.87614 3.20200 3.47839 3.54577 3.70673 3.79010 3.91130 4.14558 4.15810 4.19594 4.26565 4.30124 4.40046 4.43515 4.45793 4.59761 4.60537 4.65537 4.69183 4.70529 4.84678 4.85757 4.94096 4.98688 5.06079 5.07523 5.19651 5.32088 5.41013 5.47122 5.71342 5.88365 6.09330 6.19617 6.35201 6.41587 6.59897 6.78308 7.12687 7.16394 7.56202 8.11767 8.70166 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.002297 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.287278 B =12185.653599 C =15162.577038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.727 5.727 6 C 0.518 3.482 7 O -0.576 6.576 8 C -0.126 4.126 9 C -0.015 4.015 10 C 0.060 3.940 11 C -0.288 4.288 12 C 0.061 3.939 13 N -0.385 5.385 14 C 0.093 3.907 15 N -0.338 5.338 16 N -0.681 5.681 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.406 0.594 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.164 0.836 40 H 0.214 0.786 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.342 0.658 45 H 0.105 0.895 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 1.278 22.673 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.379 5.379 6 C 0.306 3.694 7 O -0.456 6.456 8 C -0.167 4.167 9 C -0.054 4.054 10 C -0.105 4.105 11 C -0.317 4.317 12 C -0.085 4.085 13 N -0.167 5.167 14 C -0.047 4.047 15 N -0.162 5.162 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.242 0.758 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.182 0.818 40 H 0.231 0.769 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.163 0.837 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.801 -0.560 21.837 24.369 hybrid contribution 1.087 0.960 -0.542 1.548 sum 11.888 0.401 21.295 24.392 Atomic orbital electron populations 1.21749 0.92656 1.02477 1.02661 1.21868 0.97558 0.96468 0.87262 0.91244 1.21557 0.79380 1.01203 0.98002 1.46070 1.08209 1.59651 1.23998 1.20937 0.90710 0.76278 0.81471 1.90679 1.71267 1.49035 1.34587 1.21557 0.90154 1.04218 1.00723 1.19646 0.85879 1.01592 0.98305 1.22479 0.96873 0.98019 0.93155 1.21755 0.91572 1.14175 1.04160 1.23209 1.01271 0.96595 0.87466 1.48884 1.05223 1.46361 1.16241 1.22163 0.85445 1.01174 0.95959 1.77285 0.88146 1.26083 1.24722 1.60121 1.34810 1.32941 1.03814 1.21614 1.02605 0.93655 0.88878 1.20920 0.83201 0.87982 0.85506 1.90509 1.56631 1.18285 1.85625 1.41930 1.58279 1.12578 1.08190 1.19673 1.42028 0.95855 0.88598 0.90500 1.26008 0.97284 0.96627 1.01303 1.69671 1.48650 1.09614 1.28090 0.84899 0.78216 0.78025 0.77375 1.19945 1.19660 1.19490 0.89928 0.92274 0.92863 0.92196 0.89474 0.75780 0.88691 0.86988 0.88427 0.91030 0.81822 0.76897 0.89885 0.86198 0.89998 0.83695 0.87671 0.90923 0.76906 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.41 71.98 0.68 -2.06 16 2 C 0.08 1.67 2.81 44.91 0.13 1.80 16 3 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 4 C 0.12 2.68 5.31 86.38 0.46 3.14 16 5 N -0.73 -15.88 4.99 -463.05 -2.31 -18.19 16 6 C 0.52 12.68 7.83 87.66 0.69 13.37 16 7 O -0.58 -17.82 15.98 -3.04 -0.05 -17.87 16 8 C -0.13 -2.58 5.66 29.85 0.17 -2.41 16 9 C -0.01 -0.31 5.08 29.85 0.15 -0.16 16 10 C 0.06 1.33 6.49 43.10 0.28 1.61 16 11 C -0.29 -4.90 10.72 21.99 0.24 -4.67 16 12 C 0.06 0.83 11.49 83.54 0.96 1.79 16 13 N -0.38 -6.86 4.01 -369.55 -1.48 -8.35 16 14 C 0.09 0.89 11.47 127.77 1.47 2.35 16 15 N -0.34 -8.45 12.54 -47.38 -0.59 -9.05 16 16 N -0.68 -20.49 5.93 -495.58 -2.94 -23.43 16 17 C 0.06 2.10 5.96 85.56 0.51 2.61 16 18 C 0.44 20.40 7.82 87.65 0.69 21.08 16 19 O -0.62 -34.51 15.78 -3.09 -0.05 -34.56 16 20 N -0.57 -28.96 5.29 -306.97 -1.62 -30.58 16 21 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 7.94 7.37 -92.71 -0.68 7.25 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.07 1.72 8.10 -2.38 -0.02 1.70 16 39 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.34 10.86 6.41 -89.70 -0.58 10.28 16 45 H 0.11 3.10 7.44 -2.39 -0.02 3.08 16 46 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 47 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 48 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -79.26 407.15 -0.04 -79.30 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -0.99 Total: 46.39 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 7.69 Total: 20.29 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -8.66 Total: -138.45 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.10 Total: -52.43 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.26 -0.04 -79.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690581895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.075 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds