Wall clock time and date at job start Tue Mar 31 2020 20:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47256 * 2 1 4 4 C 1.53002 * 109.46610 * 240.00157 * 2 1 3 5 5 N 1.46499 * 109.47033 * 185.00089 * 4 2 1 6 6 C 1.34772 * 120.00413 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00298 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47260 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47260 * 179.97438 * 9 8 6 11 11 C 1.35325 * 126.12378 * 85.02905 * 10 9 8 12 12 C 1.39868 * 107.91737 * 180.24396 * 11 10 9 13 13 N 1.30842 * 108.20327 * 359.55203 * 12 11 10 14 14 N 1.34941 * 126.13067 * 265.00771 * 10 9 8 15 15 C 1.46498 * 126.04014 * 359.97438 * 14 10 9 16 16 N 1.46901 * 109.46862 * 120.00603 * 2 1 3 17 17 C 1.46904 * 110.99928 * 274.99384 * 16 2 1 18 18 C 1.50690 * 109.47040 * 180.02562 * 17 16 2 19 19 O 1.21285 * 120.00410 * 359.97438 * 18 17 16 20 20 N 1.34783 * 120.00027 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00262 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00020 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99968 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99984 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47369 * 90.00049 * 25 23 21 27 27 H 1.48502 * 109.47125 * 210.00465 * 25 23 21 28 28 H 1.48501 * 109.46961 * 330.00118 * 25 23 21 29 29 H 1.08997 * 109.47388 * 59.99573 * 1 2 3 30 30 H 1.08998 * 109.47256 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47235 * 299.99554 * 1 2 3 32 32 H 1.09002 * 109.47214 * 65.00239 * 4 2 1 33 33 H 1.09004 * 109.47374 * 305.00191 * 4 2 1 34 34 H 0.97005 * 119.99627 * 359.97438 * 5 4 2 35 35 H 1.09002 * 109.46733 * 60.00075 * 8 6 5 36 36 H 1.08995 * 109.47496 * 300.00545 * 8 6 5 37 37 H 1.09002 * 109.46948 * 60.00498 * 9 8 6 38 38 H 1.08998 * 109.46871 * 300.00528 * 9 8 6 39 39 H 1.08002 * 126.03725 * 359.97438 * 11 10 9 40 40 H 1.08007 * 125.89524 * 179.73435 * 12 11 10 41 41 H 1.08994 * 109.47427 * 90.00207 * 15 14 10 42 42 H 1.08999 * 109.47247 * 210.00793 * 15 14 10 43 43 H 1.09007 * 109.46720 * 330.00755 * 15 14 10 44 44 H 1.00899 * 111.00352 * 38.95385 * 16 2 1 45 45 H 1.09007 * 109.47104 * 300.00668 * 17 16 2 46 46 H 1.09004 * 109.46729 * 60.00301 * 17 16 2 47 47 H 0.97001 * 119.99693 * 359.97438 * 20 18 17 48 48 H 0.97007 * 120.00040 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4283 -2.1913 7 8 3.5699 -1.8824 -3.1405 8 6 5.6748 -1.5360 -2.1313 9 6 6.1848 -2.2574 -3.3805 10 6 7.6868 -2.3645 -3.3208 11 6 8.3932 -3.3314 -2.6905 12 6 9.7529 -3.0589 -2.8725 13 7 9.8591 -1.9729 -3.5945 14 7 8.5682 -1.5137 -3.8866 15 6 8.2344 -0.3211 -4.6692 16 7 2.0196 -0.6926 1.1994 17 6 2.0825 0.2224 2.3469 18 6 2.5885 -0.5218 3.5556 19 8 2.8686 -1.6987 3.4698 20 7 2.7287 0.1202 4.7324 21 6 3.1885 -0.5569 5.8322 22 1 3.4380 -1.6049 5.7557 23 6 3.3325 0.1049 7.0454 24 7 3.7738 -0.5441 8.0995 25 14 2.9004 1.9173 7.1778 26 1 1.4707 2.0592 7.5537 27 1 3.7506 2.5544 8.2153 28 1 3.1363 2.5792 5.8696 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7515 -0.1583 -2.1370 33 1 1.6052 -1.7198 -1.2953 34 1 3.9823 -0.4622 -0.4320 35 1 5.9635 -2.0991 -1.2437 36 1 6.1092 -0.5374 -2.0851 37 1 5.8961 -1.6946 -4.2683 38 1 5.7504 -3.2560 -3.4262 39 1 7.9800 -4.1638 -2.1401 40 1 10.5735 -3.6454 -2.4863 41 1 8.1574 0.5396 -4.0049 42 1 9.0151 -0.1411 -5.4082 43 1 7.2820 -0.4746 -5.1768 44 1 1.4495 -1.4981 1.4099 45 1 2.7589 1.0461 2.1182 46 1 1.0871 0.6161 2.5526 47 1 2.5043 1.0614 4.8011 48 1 3.8740 -0.0822 8.9466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690582665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:23 Heat of formation + Delta-G solvation = 1.937039 kcal Electronic energy + Delta-G solvation = -28189.888331 eV Core-core repulsion = 24088.499866 eV Total energy + Delta-G solvation = -4101.388465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45360 -39.81159 -38.66352 -37.12211 -34.39213 -34.19818 -33.83578 -33.20400 -31.74888 -30.98662 -29.59218 -26.99491 -26.82002 -26.46318 -24.35097 -23.69680 -21.34626 -21.14464 -20.34281 -19.81863 -19.46540 -18.45328 -17.45533 -16.69598 -16.33043 -16.13292 -15.78859 -15.66027 -15.33874 -15.04891 -14.90575 -14.63470 -14.13608 -14.07434 -13.75891 -13.41751 -13.32372 -13.12805 -13.07372 -12.88541 -12.68654 -12.61789 -12.46217 -12.41831 -12.23783 -12.18360 -11.82633 -11.61392 -11.40862 -11.22311 -11.11840 -10.80835 -10.64924 -10.02723 -9.99798 -9.62993 -9.47075 -9.06592 -8.71244 -8.69138 -8.29926 -8.22727 -6.36087 -3.87876 1.62605 2.28818 2.57735 2.64364 2.97272 3.01714 3.10771 3.16137 3.66809 3.94768 4.05354 4.28557 4.31590 4.63706 4.64347 4.67477 4.74231 4.82800 4.87263 4.93710 4.99905 5.07402 5.09217 5.16239 5.20754 5.37262 5.38309 5.46985 5.52667 5.56292 5.59918 5.61360 5.71255 5.73966 5.80950 5.85326 5.93861 6.00635 6.40670 6.46504 6.78068 6.94470 7.42677 7.50673 7.50941 7.52514 8.08896 8.17824 8.53762 8.89633 9.36723 9.76138 10.76919 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.002237 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.126440 B =12516.093566 C =14432.864868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.083 0.917 4 C 0.134 3.866 5 N -0.711 5.711 6 C 0.513 3.487 7 O -0.553 6.553 8 C -0.135 4.135 9 C -0.040 4.040 10 C 0.086 3.914 11 C -0.269 4.269 12 C 0.047 3.953 13 N -0.302 5.302 14 N -0.373 5.373 15 C 0.098 3.902 16 N -0.664 5.664 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.183 0.817 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.355 0.645 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 4.604 -23.536 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.009 3.991 5 N -0.363 5.363 6 C 0.300 3.700 7 O -0.432 6.432 8 C -0.176 4.176 9 C -0.079 4.079 10 C -0.041 4.041 11 C -0.299 4.299 12 C -0.138 4.138 13 N -0.123 5.123 14 N -0.156 5.156 15 C -0.044 4.044 16 N -0.297 5.297 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.246 0.754 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.167 0.833 40 H 0.200 0.800 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.176 0.824 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.646 4.516 -24.820 25.366 hybrid contribution -1.547 1.260 1.471 2.479 sum 1.099 5.775 -23.349 24.078 Atomic orbital electron populations 1.22439 0.96192 1.02852 1.02603 1.21861 0.93431 0.98267 0.90747 0.89834 1.21320 0.80319 1.00961 0.96490 1.45822 1.07742 1.59207 1.23483 1.20510 0.89777 0.77492 0.82249 1.90691 1.70516 1.48253 1.33752 1.21605 0.92379 1.03109 1.00517 1.19960 0.86299 1.03566 0.98079 1.21092 0.93274 0.92215 0.97538 1.21325 0.92895 1.04259 1.11387 1.23859 0.97533 0.94922 0.97511 1.77366 0.99344 1.14823 1.20795 1.48500 1.03759 1.21537 1.41823 1.21859 1.02460 0.84497 0.95557 1.60172 1.57867 1.09177 1.02442 1.21756 1.00087 0.95749 0.91002 1.19688 0.84947 0.88283 0.83745 1.90577 1.53843 1.15958 1.84197 1.42213 1.60058 1.11058 1.09570 1.19424 1.40438 0.97948 0.85652 0.86266 1.25049 0.97436 0.98407 0.95267 1.69621 1.44870 1.36638 1.00828 0.86672 0.79279 0.84923 0.78483 1.19668 1.20143 1.19513 0.91802 0.91854 0.91985 0.91425 0.91461 0.75371 0.87744 0.89087 0.90073 0.88253 0.83328 0.79981 0.90683 0.89320 0.89429 0.82428 0.89540 0.93578 0.79727 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.16 37.16 0.34 -1.16 16 2 C 0.07 0.64 2.75 -67.71 -0.19 0.45 16 3 H 0.08 0.72 7.80 -51.93 -0.41 0.31 16 4 C 0.13 1.34 5.37 -4.04 -0.02 1.32 16 5 N -0.71 -7.40 5.39 -60.29 -0.32 -7.72 16 6 C 0.51 5.70 7.83 -10.99 -0.09 5.62 16 7 O -0.55 -7.85 15.98 5.56 0.09 -7.76 16 8 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 9 C -0.04 -0.34 4.79 -27.88 -0.13 -0.48 16 10 C 0.09 0.85 6.19 -82.27 -0.51 0.34 16 11 C -0.27 -2.73 10.72 -40.01 -0.43 -3.16 16 12 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 13 N -0.30 -3.61 12.58 30.63 0.39 -3.23 16 14 N -0.37 -3.80 4.01 -63.89 -0.26 -4.06 16 15 C 0.10 0.62 11.27 59.85 0.67 1.30 16 16 N -0.66 -8.60 5.32 -107.99 -0.57 -9.17 16 17 C 0.05 0.67 5.96 -4.98 -0.03 0.64 16 18 C 0.45 9.46 7.82 -10.99 -0.09 9.38 16 19 O -0.56 -14.34 15.78 5.55 0.09 -14.25 16 20 N -0.59 -13.37 5.09 -10.97 -0.06 -13.42 16 21 C -0.31 -8.41 10.16 -14.94 -0.15 -8.56 16 22 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.25 13.96 55.50 0.77 -24.48 16 25 Si 0.88 18.79 27.74 -169.99 -4.71 14.08 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 4.14 8.14 -40.82 -0.33 3.80 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.66 6.90 -51.93 -0.36 0.30 16 38 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.41 6.97 -51.92 -0.36 0.05 16 44 H 0.36 5.07 8.17 -39.29 -0.32 4.75 16 45 H 0.09 1.08 8.06 -51.92 -0.42 0.67 16 46 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 47 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -35.61 403.52 -7.00 -42.61 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.41 Total: 15.67 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.08 Total: 5.67 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.05 Total: -62.08 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.02 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.61 -7.00 -42.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690582665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.544 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds