Wall clock time and date at job start Tue Mar 31 2020 20:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47262 * 119.99965 * 2 1 3 5 5 N 1.46503 * 109.47085 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99713 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00492 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47099 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47053 * 180.02562 * 9 8 6 11 11 C 1.35315 * 126.13100 * 84.68897 * 10 9 8 12 12 C 1.39867 * 107.92134 * 180.26483 * 11 10 9 13 13 N 1.30834 * 108.20347 * 359.97438 * 12 11 10 14 14 N 1.34954 * 126.12392 * 264.99749 * 10 9 8 15 15 C 1.46500 * 126.03681 * 359.71674 * 14 10 9 16 16 N 1.46899 * 109.46914 * 239.99805 * 2 1 3 17 17 C 1.46905 * 110.99816 * 84.99971 * 16 2 1 18 18 C 1.50701 * 109.47222 * 179.97438 * 17 16 2 19 19 O 1.21298 * 119.99993 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00099 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00018 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99600 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00069 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00055 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00036 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47291 * 89.99695 * 25 23 21 27 27 H 1.48492 * 109.47302 * 210.00024 * 25 23 21 28 28 H 1.48499 * 109.47124 * 329.99958 * 25 23 21 29 29 H 1.08993 * 109.47518 * 60.00172 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47123 * 299.99948 * 1 2 3 32 32 H 1.09010 * 109.47410 * 55.00102 * 4 2 1 33 33 H 1.09001 * 109.47326 * 295.00002 * 4 2 1 34 34 H 0.96992 * 120.00118 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47157 * 60.00553 * 8 6 5 36 36 H 1.09001 * 109.47270 * 300.00625 * 8 6 5 37 37 H 1.08993 * 109.47178 * 60.00320 * 9 8 6 38 38 H 1.09001 * 109.47326 * 300.00292 * 9 8 6 39 39 H 1.07997 * 126.03615 * 0.26007 * 11 10 9 40 40 H 1.08000 * 125.89932 * 180.02562 * 12 11 10 41 41 H 1.08993 * 109.47474 * 89.99615 * 15 14 10 42 42 H 1.08995 * 109.46967 * 209.99945 * 15 14 10 43 43 H 1.09009 * 109.47150 * 329.99594 * 15 14 10 44 44 H 1.00895 * 111.00433 * 321.04801 * 16 2 1 45 45 H 1.08999 * 109.47235 * 299.99790 * 17 16 2 46 46 H 1.08999 * 109.46746 * 59.99923 * 17 16 2 47 47 H 0.96994 * 120.00421 * 0.02562 * 20 18 17 48 48 H 0.97000 * 120.00206 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1399 8 6 5.6750 -1.5369 2.1304 9 6 6.1850 -2.2581 3.3797 10 6 7.6869 -2.3662 3.3193 11 6 8.5714 -1.4207 3.7129 12 6 9.8597 -1.9146 3.4838 13 7 9.7527 -3.1138 2.9716 14 7 8.3907 -3.4210 2.8576 15 6 7.8295 -4.6676 2.3311 16 7 2.0196 -0.6925 -1.1994 17 6 2.0823 0.2226 -2.3469 18 6 2.5883 -0.5215 -3.5558 19 8 2.8687 -1.6986 -3.4700 20 7 2.7284 0.1205 -4.7324 21 6 3.1883 -0.5566 -5.8323 22 1 3.4386 -1.6043 -5.7557 23 6 3.3332 0.1055 -7.0453 24 7 3.7744 -0.5434 -8.0994 25 14 2.9009 1.9179 -7.1776 26 1 4.1011 2.7369 -6.8707 27 1 2.4370 2.2168 -8.5562 28 1 1.8208 2.2410 -6.2110 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4622 0.4319 35 1 6.1099 -0.5386 2.0838 36 1 5.9629 -2.1005 1.2430 37 1 5.7501 -3.2564 3.4259 38 1 5.8970 -1.6949 4.2674 39 1 8.3258 -0.4553 4.1301 40 1 10.7834 -1.3960 3.6942 41 1 7.6773 -4.5721 1.2561 42 1 8.5188 -5.4884 2.5289 43 1 6.8747 -4.8699 2.8167 44 1 1.4495 -1.4979 -1.4100 45 1 1.0870 0.6163 -2.5525 46 1 2.7587 1.0461 -2.1182 47 1 2.5040 1.0616 -4.8011 48 1 3.8760 -0.0811 -8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690582666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:26 Heat of formation + Delta-G solvation = 1.507409 kcal Electronic energy + Delta-G solvation = -28236.330385 eV Core-core repulsion = 24134.923289 eV Total energy + Delta-G solvation = -4101.407095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44806 -39.81144 -38.66992 -37.12586 -34.38825 -34.19970 -33.84084 -33.17206 -31.75955 -30.98978 -29.59232 -26.96178 -26.81319 -26.46702 -24.35239 -23.70354 -21.34256 -21.14632 -20.34055 -19.80669 -19.47512 -18.46162 -17.44912 -16.69071 -16.28787 -16.16158 -15.82745 -15.60868 -15.33963 -15.04215 -14.91819 -14.58121 -14.25230 -14.00208 -13.68438 -13.50403 -13.33990 -13.12354 -13.03615 -12.81918 -12.64924 -12.60247 -12.49339 -12.44083 -12.21673 -12.18642 -11.83036 -11.62042 -11.41275 -11.22452 -11.11783 -10.79817 -10.65486 -10.03754 -9.99750 -9.63859 -9.45845 -9.06568 -8.71749 -8.70009 -8.30513 -8.23873 -6.37076 -3.88977 1.64256 2.31795 2.57582 2.63659 2.96634 3.01497 3.10324 3.16038 3.65761 3.94464 4.04651 4.29149 4.36189 4.63701 4.66561 4.67367 4.73568 4.85507 4.92146 4.96389 5.01947 5.07404 5.15895 5.20696 5.26921 5.31915 5.38008 5.47136 5.52217 5.54853 5.56317 5.61296 5.70870 5.73925 5.80386 5.85041 5.93653 5.99117 6.40657 6.46041 6.79440 6.93899 7.41878 7.50776 7.51801 7.52075 8.07819 8.17858 8.52774 8.88550 9.35743 9.75104 10.75942 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.002296 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.208077 B =12192.749240 C =14174.439884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.134 3.866 5 N -0.711 5.711 6 C 0.514 3.486 7 O -0.553 6.553 8 C -0.136 4.136 9 C -0.040 4.040 10 C 0.088 3.912 11 C -0.273 4.273 12 C 0.045 3.955 13 N -0.300 5.300 14 N -0.370 5.370 15 C 0.095 3.905 16 N -0.664 5.664 17 C 0.047 3.953 18 C 0.448 3.552 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.182 0.818 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.355 0.645 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 3.285 22.821 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.009 3.991 5 N -0.363 5.363 6 C 0.300 3.700 7 O -0.432 6.432 8 C -0.176 4.176 9 C -0.080 4.080 10 C -0.040 4.040 11 C -0.303 4.303 12 C -0.141 4.141 13 N -0.121 5.121 14 N -0.153 5.153 15 C -0.046 4.046 16 N -0.297 5.297 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.175 0.825 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.329 1.063 22.950 23.092 hybrid contribution -1.459 2.490 -0.807 2.996 sum 0.870 3.553 22.143 22.443 Atomic orbital electron populations 1.22438 0.96195 1.02828 1.02624 1.21863 0.93429 0.98309 0.90717 0.89777 1.21320 0.80312 1.00922 0.96528 1.45821 1.07737 1.59229 1.23470 1.20512 0.89764 0.77519 0.82232 1.90690 1.70510 1.48290 1.33718 1.21603 0.92443 1.03622 0.99943 1.19960 0.86301 1.02793 0.98897 1.21101 0.95107 0.88990 0.98837 1.21251 0.91708 1.02283 1.15035 1.23829 0.98838 0.92888 0.98508 1.77379 0.94010 1.17252 1.23486 1.48540 1.04070 1.13910 1.48736 1.21917 0.99382 0.83242 1.00062 1.60177 1.57852 1.09181 1.02457 1.21757 1.00114 0.95757 0.90979 1.19693 0.84923 0.88266 0.83779 1.90576 1.53901 1.15963 1.84253 1.42211 1.59957 1.11137 1.09557 1.19423 1.40270 0.98021 0.85798 0.86292 1.25049 0.97413 0.98435 0.95243 1.69616 1.44881 1.36584 1.00879 0.86667 0.78988 0.85102 0.78579 1.19562 1.20159 1.19561 0.91984 0.91888 0.91778 0.91524 0.91363 0.75369 0.88228 0.88590 0.89907 0.88410 0.83553 0.80084 0.90295 0.89234 0.89322 0.82475 0.93568 0.89493 0.79705 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.16 37.16 0.34 -1.16 16 2 C 0.07 0.64 2.75 -67.72 -0.19 0.45 16 3 H 0.08 0.72 7.80 -51.93 -0.40 0.32 16 4 C 0.13 1.34 5.37 -4.04 -0.02 1.32 16 5 N -0.71 -7.38 5.39 -60.29 -0.32 -7.71 16 6 C 0.51 5.70 7.83 -10.98 -0.09 5.61 16 7 O -0.55 -7.84 15.98 5.56 0.09 -7.75 16 8 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 9 C -0.04 -0.35 4.79 -27.88 -0.13 -0.48 16 10 C 0.09 0.87 6.19 -82.26 -0.51 0.36 16 11 C -0.27 -2.61 10.72 -40.01 -0.43 -3.04 16 12 C 0.04 0.45 12.03 -17.37 -0.21 0.24 16 13 N -0.30 -3.68 12.58 30.62 0.39 -3.30 16 14 N -0.37 -3.99 4.01 -63.88 -0.26 -4.25 16 15 C 0.10 0.73 11.27 59.85 0.67 1.41 16 16 N -0.66 -8.57 5.32 -107.99 -0.57 -9.15 16 17 C 0.05 0.67 5.97 -4.97 -0.03 0.64 16 18 C 0.45 9.45 7.82 -10.99 -0.09 9.36 16 19 O -0.56 -14.34 15.78 5.54 0.09 -14.25 16 20 N -0.59 -13.35 5.09 -10.96 -0.06 -13.41 16 21 C -0.31 -8.41 10.16 -14.93 -0.15 -8.57 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.24 13.96 55.50 0.77 -24.46 16 25 Si 0.88 18.78 27.74 -169.99 -4.71 14.06 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 29 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.41 4.12 8.14 -40.82 -0.33 3.79 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.73 6.90 -51.93 -0.36 0.37 16 38 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.53 6.98 -51.92 -0.36 0.17 16 44 H 0.35 5.05 8.17 -39.29 -0.32 4.73 16 45 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 46 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 47 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -35.53 403.52 -7.00 -42.53 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.41 Total: 15.76 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.08 Total: 5.84 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.05 Total: -62.27 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.18 Total: -22.00 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.53 -7.00 -42.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690582666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.038 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds