Wall clock time and date at job start Tue Mar 31 2020 20:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47262 * 119.99965 * 2 1 3 5 5 N 1.46503 * 109.47085 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99713 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00492 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47099 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47053 * 180.02562 * 9 8 6 11 11 C 1.35315 * 126.13100 * 84.68897 * 10 9 8 12 12 C 1.39867 * 107.92134 * 180.26483 * 11 10 9 13 13 N 1.30834 * 108.20347 * 359.97438 * 12 11 10 14 14 N 1.34954 * 126.12392 * 264.99749 * 10 9 8 15 15 C 1.46500 * 126.03681 * 359.71674 * 14 10 9 16 16 N 1.46899 * 109.46914 * 239.99805 * 2 1 3 17 17 C 1.46905 * 110.99816 * 84.99971 * 16 2 1 18 18 C 1.50701 * 109.47222 * 179.97438 * 17 16 2 19 19 O 1.21298 * 119.99993 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00099 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00018 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99600 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00069 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00055 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00036 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47291 * 89.99695 * 25 23 21 27 27 H 1.48492 * 109.47302 * 210.00024 * 25 23 21 28 28 H 1.48499 * 109.47124 * 329.99958 * 25 23 21 29 29 H 1.08993 * 109.47518 * 60.00172 * 1 2 3 30 30 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47123 * 299.99948 * 1 2 3 32 32 H 1.09010 * 109.47410 * 55.00102 * 4 2 1 33 33 H 1.09001 * 109.47326 * 295.00002 * 4 2 1 34 34 H 0.96992 * 120.00118 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.47157 * 60.00553 * 8 6 5 36 36 H 1.09001 * 109.47270 * 300.00625 * 8 6 5 37 37 H 1.08993 * 109.47178 * 60.00320 * 9 8 6 38 38 H 1.09001 * 109.47326 * 300.00292 * 9 8 6 39 39 H 1.07997 * 126.03615 * 0.26007 * 11 10 9 40 40 H 1.08000 * 125.89932 * 180.02562 * 12 11 10 41 41 H 1.08993 * 109.47474 * 89.99615 * 15 14 10 42 42 H 1.08995 * 109.46967 * 209.99945 * 15 14 10 43 43 H 1.09009 * 109.47150 * 329.99594 * 15 14 10 44 44 H 1.00895 * 111.00433 * 321.04801 * 16 2 1 45 45 H 1.08999 * 109.47235 * 299.99790 * 17 16 2 46 46 H 1.08999 * 109.46746 * 59.99923 * 17 16 2 47 47 H 0.96994 * 120.00421 * 0.02562 * 20 18 17 48 48 H 0.97000 * 120.00206 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1399 8 6 5.6750 -1.5369 2.1304 9 6 6.1850 -2.2581 3.3797 10 6 7.6869 -2.3662 3.3193 11 6 8.5714 -1.4207 3.7129 12 6 9.8597 -1.9146 3.4838 13 7 9.7527 -3.1138 2.9716 14 7 8.3907 -3.4210 2.8576 15 6 7.8295 -4.6676 2.3311 16 7 2.0196 -0.6925 -1.1994 17 6 2.0823 0.2226 -2.3469 18 6 2.5883 -0.5215 -3.5558 19 8 2.8687 -1.6986 -3.4700 20 7 2.7284 0.1205 -4.7324 21 6 3.1883 -0.5566 -5.8323 22 1 3.4386 -1.6043 -5.7557 23 6 3.3332 0.1055 -7.0453 24 7 3.7744 -0.5434 -8.0994 25 14 2.9009 1.9179 -7.1776 26 1 4.1011 2.7369 -6.8707 27 1 2.4370 2.2168 -8.5562 28 1 1.8208 2.2410 -6.2110 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7199 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9824 -0.4622 0.4319 35 1 6.1099 -0.5386 2.0838 36 1 5.9629 -2.1005 1.2430 37 1 5.7501 -3.2564 3.4259 38 1 5.8970 -1.6949 4.2674 39 1 8.3258 -0.4553 4.1301 40 1 10.7834 -1.3960 3.6942 41 1 7.6773 -4.5721 1.2561 42 1 8.5188 -5.4884 2.5289 43 1 6.8747 -4.8699 2.8167 44 1 1.4495 -1.4979 -1.4100 45 1 1.0870 0.6163 -2.5525 46 1 2.7587 1.0461 -2.1182 47 1 2.5040 1.0616 -4.8011 48 1 3.8760 -0.0811 -8.9461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690582666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:25 Heat of formation + Delta-G solvation = -27.318878 kcal Electronic energy + Delta-G solvation = -28237.580386 eV Core-core repulsion = 24134.923289 eV Total energy + Delta-G solvation = -4102.657097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19002 -40.72174 -40.25915 -38.17486 -36.00292 -35.10887 -34.94859 -33.87733 -33.73382 -31.98819 -30.36044 -28.07575 -27.63914 -27.44453 -25.56272 -24.87453 -22.07809 -21.96230 -21.27644 -21.16565 -20.53379 -20.28024 -18.28415 -17.81706 -17.30528 -17.15800 -16.81350 -16.73575 -16.44745 -16.25960 -16.07807 -15.49216 -15.32668 -14.97155 -14.82126 -14.62914 -14.49123 -14.29294 -14.10809 -13.76136 -13.70434 -13.50885 -13.36721 -13.28216 -13.18682 -13.08105 -12.96363 -12.77239 -12.48214 -12.39938 -12.12065 -11.97793 -11.85882 -11.56120 -11.49522 -10.90774 -10.41625 -10.23598 -10.23329 -9.93443 -9.45870 -9.33480 -8.40289 -6.01177 0.89004 1.30858 1.36954 1.45602 1.64071 1.71198 1.90176 1.98964 2.24083 2.36413 2.73797 3.16622 3.41120 3.56949 3.72856 3.89026 3.94994 3.98811 4.08097 4.19063 4.26380 4.34193 4.35718 4.37431 4.48031 4.56299 4.59706 4.62437 4.65514 4.70965 4.82522 4.84938 4.90544 4.92037 5.02774 5.05825 5.28915 5.29109 5.53816 5.57891 5.76485 5.92173 6.05933 6.09936 6.35617 6.61029 6.67160 6.76944 6.90175 7.33275 7.42207 7.99343 8.77459 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.002296 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.208077 B =12192.749240 C =14174.439884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.105 0.895 4 C 0.134 3.866 5 N -0.708 5.708 6 C 0.512 3.488 7 O -0.587 6.587 8 C -0.127 4.127 9 C -0.032 4.032 10 C 0.082 3.918 11 C -0.280 4.280 12 C 0.040 3.960 13 N -0.341 5.341 14 N -0.381 5.381 15 C 0.089 3.911 16 N -0.677 5.677 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.229 1.229 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.167 0.833 40 H 0.208 0.792 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.345 0.655 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 7.094 24.396 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.033 4.033 3 H 0.123 0.877 4 C 0.009 3.991 5 N -0.359 5.359 6 C 0.300 3.700 7 O -0.468 6.468 8 C -0.167 4.167 9 C -0.071 4.071 10 C -0.046 4.046 11 C -0.309 4.309 12 C -0.145 4.145 13 N -0.162 5.162 14 N -0.164 5.164 15 C -0.052 4.052 16 N -0.310 5.310 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.204 1.204 28 H -0.152 1.152 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.250 0.750 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.185 0.815 40 H 0.224 0.776 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.138 0.862 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.122 4.891 24.549 25.057 hybrid contribution -1.073 1.153 -1.229 1.998 sum 0.048 6.044 23.320 24.090 Atomic orbital electron populations 1.22398 0.95025 1.02700 1.03597 1.21876 0.94260 0.98637 0.88487 0.87670 1.21352 0.80019 1.00307 0.97378 1.45858 1.08020 1.58722 1.23263 1.20867 0.90610 0.76815 0.81738 1.90676 1.71348 1.49761 1.35033 1.21558 0.90757 1.04643 0.99777 1.19890 0.85517 1.02657 0.99043 1.21350 0.95591 0.88999 0.98671 1.21592 0.91394 1.03080 1.14825 1.24359 1.00237 0.92396 0.97516 1.77322 0.95144 1.18641 1.25133 1.48790 1.03841 1.14782 1.49002 1.22098 1.00144 0.82704 1.00255 1.60157 1.58630 1.09156 1.03037 1.21684 1.01968 0.95398 0.87925 1.21068 0.82370 0.87947 0.84972 1.90561 1.55301 1.18745 1.85288 1.42041 1.60627 1.11896 1.08823 1.18987 1.42190 0.96043 0.88411 0.92801 1.26137 0.96481 1.05036 0.93904 1.69808 1.46462 1.39619 1.01861 0.85358 0.80253 0.76496 0.79351 1.18132 1.20382 1.15171 0.91723 0.92673 0.90015 0.93246 0.90307 0.75003 0.86371 0.88725 0.90344 0.88073 0.81502 0.77587 0.90219 0.88732 0.87824 0.83640 0.90542 0.86185 0.77464 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.16 71.98 0.66 -1.69 16 2 C 0.08 1.20 2.75 44.91 0.12 1.32 16 3 H 0.11 1.27 7.80 -2.39 -0.02 1.25 16 4 C 0.13 2.40 5.37 86.38 0.46 2.87 16 5 N -0.71 -13.44 5.39 -463.04 -2.50 -15.93 16 6 C 0.51 10.74 7.83 87.66 0.69 11.43 16 7 O -0.59 -16.21 15.98 -3.03 -0.05 -16.26 16 8 C -0.13 -2.02 5.68 29.85 0.17 -1.85 16 9 C -0.03 -0.52 4.79 29.85 0.14 -0.38 16 10 C 0.08 1.55 6.19 41.40 0.26 1.81 16 11 C -0.28 -4.96 10.72 21.99 0.24 -4.72 16 12 C 0.04 0.76 12.03 85.24 1.02 1.79 16 13 N -0.34 -8.32 12.58 -57.03 -0.72 -9.04 16 14 N -0.38 -8.15 4.01 -356.03 -1.43 -9.58 16 15 C 0.09 1.37 11.27 127.77 1.44 2.81 16 16 N -0.68 -15.92 5.32 -495.57 -2.63 -18.55 16 17 C 0.06 1.57 5.97 85.56 0.51 2.08 16 18 C 0.45 18.53 7.82 87.66 0.69 19.21 16 19 O -0.61 -32.05 15.78 -3.09 -0.05 -32.10 16 20 N -0.59 -26.23 5.09 -306.99 -1.56 -27.79 16 21 C -0.33 -18.57 10.16 84.04 0.85 -17.72 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 24 N -0.94 -55.72 13.96 21.66 0.30 -55.42 16 25 Si 0.97 37.35 27.74 68.60 1.90 39.25 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.60 16 29 H 0.06 0.85 7.45 -2.39 -0.02 0.83 16 30 H 0.05 0.83 8.13 -2.38 -0.02 0.81 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 7.39 8.14 -92.71 -0.75 6.64 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.35 6.90 -2.39 -0.02 1.33 16 38 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.23 6.98 -2.38 -0.02 1.21 16 44 H 0.34 9.44 8.17 -89.70 -0.73 8.71 16 45 H 0.08 1.55 7.44 -2.39 -0.02 1.53 16 46 H 0.12 2.33 8.05 -2.39 -0.02 2.31 16 47 H 0.39 14.06 5.76 -92.71 -0.53 13.52 16 48 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -83.36 403.52 -0.09 -83.45 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -1.08 Total: 45.47 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.72 Total: 16.50 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -8.54 Total: -136.32 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.10 Total: -48.36 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.90 Total: 39.25 kcal Total: -83.36 -0.09 -83.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690582666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.131 kcal (2) G-P(sol) polarization free energy of solvation -83.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds