Wall clock time and date at job start Tue Mar 31 2020 19:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47492 * 295.00479 * 9 8 7 11 11 C 1.52999 * 109.47469 * 175.00230 * 9 8 7 12 12 N 1.46904 * 109.46866 * 55.00128 * 9 8 7 13 13 C 1.46901 * 111.00212 * 205.00115 * 12 9 8 14 14 C 1.50695 * 109.47230 * 180.02562 * 13 12 9 15 15 O 1.21295 * 120.00087 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99821 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99649 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00170 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99832 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00269 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00297 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47061 * 89.99932 * 21 19 17 23 23 H 1.48503 * 109.47104 * 209.99908 * 21 19 17 24 24 H 1.48504 * 109.46730 * 329.99683 * 21 19 17 25 25 N 1.46493 * 109.47203 * 119.99910 * 2 1 3 26 26 C 1.34953 * 126.03789 * 34.72130 * 25 2 1 27 27 C 1.35307 * 107.74798 * 179.83769 * 26 25 2 28 28 C 1.39871 * 107.92167 * 0.42168 * 27 26 25 29 29 N 1.30843 * 108.20049 * 359.73660 * 28 27 26 30 30 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 31 31 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 35 35 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 36 36 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 37 37 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 38 38 H 1.09006 * 109.46848 * 300.00307 * 11 9 8 39 39 H 1.08998 * 109.47183 * 59.99971 * 11 9 8 40 40 H 1.08994 * 109.47107 * 180.02562 * 11 9 8 41 41 H 1.00901 * 110.99889 * 328.95544 * 12 9 8 42 42 H 1.09003 * 109.46810 * 300.00070 * 13 12 9 43 43 H 1.08993 * 109.46680 * 59.99941 * 13 12 9 44 44 H 0.96996 * 120.00282 * 0.02562 * 16 14 13 45 45 H 0.96992 * 120.00545 * 179.97438 * 20 19 17 46 46 H 1.07999 * 126.11980 * 359.97438 * 26 25 2 47 47 H 1.08009 * 126.04209 * 180.16166 * 27 26 25 48 48 H 1.07999 * 125.89726 * 179.72244 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 1 3.2115 -0.3482 -6.1375 11 6 1.6170 0.3773 -7.3911 12 7 1.6308 -1.7320 -6.1469 13 6 2.5168 -2.6016 -6.9322 14 6 1.9821 -4.0104 -6.9151 15 8 0.9629 -4.2649 -6.3088 16 7 2.6358 -4.9873 -7.5744 17 6 2.1496 -6.2691 -7.5584 18 1 1.2426 -6.4959 -7.0179 19 6 2.8239 -7.2764 -8.2377 20 7 3.9273 -7.0004 -8.8959 21 14 2.1611 -9.0228 -8.2166 22 1 1.2334 -9.2140 -9.3602 23 1 3.2894 -9.9818 -8.3287 24 1 1.4338 -9.2608 -6.9439 25 7 2.0183 -0.6906 1.1961 26 6 1.4374 -1.7526 1.7925 27 6 2.1966 -2.0928 2.8596 28 6 3.2735 -1.2025 2.9230 29 7 3.1676 -0.3614 1.9263 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 2.4935 -1.2124 -3.7906 36 1 0.5212 0.4500 -4.9405 37 1 2.0421 1.3695 -4.8424 38 1 0.5269 0.3782 -7.3953 39 1 1.9811 1.4047 -7.3872 40 1 1.9830 -0.1349 -8.2809 41 1 1.5226 -2.0808 -5.2063 42 1 2.5604 -2.2424 -7.9604 43 1 3.5171 -2.5869 -6.4995 44 1 3.4507 -4.7837 -8.0596 45 1 4.3982 -7.7036 -9.3697 46 1 0.5302 -2.2443 1.4737 47 1 2.0029 -2.9055 3.5441 48 1 4.0568 -1.2081 3.6664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690637517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:55 Heat of formation + Delta-G solvation = -19.819269 kcal Electronic energy + Delta-G solvation = -28457.470858 eV Core-core repulsion = 24355.138969 eV Total energy + Delta-G solvation = -4102.331889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17864 -41.03508 -40.17835 -38.34784 -36.38701 -35.96566 -35.00734 -33.28276 -32.21829 -31.29879 -30.73366 -29.29713 -28.13930 -26.92035 -25.66457 -24.29078 -21.97667 -21.76866 -21.63017 -21.13444 -20.71200 -19.92205 -18.72395 -18.12715 -17.47139 -17.16060 -17.07346 -16.80401 -16.43738 -16.19076 -15.87396 -15.71483 -15.54790 -15.20602 -14.79221 -14.70137 -14.32740 -14.14308 -13.93265 -13.73568 -13.71008 -13.49915 -13.45343 -13.28935 -12.97191 -12.86812 -12.75651 -12.59190 -12.48069 -12.40913 -12.25975 -12.11959 -11.88673 -11.61900 -11.50505 -11.04450 -10.40434 -10.34472 -10.19444 -10.01462 -9.53222 -9.38475 -8.46829 -5.95340 0.96630 1.38062 1.41677 1.42515 1.49815 1.54580 1.97336 2.05087 2.17317 2.28940 2.86469 3.20911 3.40191 3.48149 3.56731 3.66594 3.77790 3.98410 4.09029 4.12250 4.16806 4.25483 4.37970 4.38788 4.44774 4.45861 4.59724 4.62777 4.70757 4.75951 4.80589 4.83502 4.92825 4.94885 5.04790 5.13972 5.18124 5.30040 5.41194 5.44960 5.77035 5.87326 6.08188 6.13054 6.32431 6.35619 6.59893 6.79071 7.06412 7.12801 7.56572 8.11480 8.70411 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009661 B = 0.002302 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.512673 B =12160.430865 C =14375.593436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 H 0.092 0.908 4 C -0.148 4.148 5 C 0.526 3.474 6 O -0.565 6.565 7 N -0.723 5.723 8 C 0.124 3.876 9 C 0.077 3.923 10 H 0.067 0.933 11 C -0.138 4.138 12 N -0.679 5.679 13 C 0.064 3.936 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.375 5.375 26 C 0.052 3.948 27 C -0.285 4.285 28 C 0.037 3.963 29 N -0.342 5.342 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.343 0.657 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.197 0.803 47 H 0.167 0.833 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 13.870 15.582 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 H 0.110 0.890 4 C -0.189 4.189 5 C 0.312 3.688 6 O -0.445 6.445 7 N -0.376 5.376 8 C 0.000 4.000 9 C -0.032 4.032 10 H 0.085 0.915 11 C -0.196 4.196 12 N -0.314 5.314 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.196 1.196 25 N -0.158 5.158 26 C -0.094 4.094 27 C -0.314 4.314 28 C -0.148 4.148 29 N -0.163 5.163 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.214 0.786 47 H 0.184 0.816 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.840 15.510 14.710 21.392 hybrid contribution 0.831 -2.051 0.460 2.260 sum -0.010 13.459 15.169 20.279 Atomic orbital electron populations 1.22248 0.91284 1.04055 1.04358 1.20837 0.95847 0.95951 0.79629 0.88973 1.22033 1.04450 1.01239 0.91179 1.20430 0.78429 0.85107 0.84810 1.90687 1.41159 1.25681 1.86964 1.46021 1.57565 1.28098 1.05898 1.21567 1.00766 0.95381 0.82303 1.21864 0.98440 0.87559 0.95373 0.91512 1.21750 1.01781 1.00135 0.95924 1.60121 1.50548 1.01396 1.19377 1.21613 0.94801 0.89183 1.01243 1.20876 0.85857 0.87888 0.82914 1.90500 1.27603 1.84151 1.48653 1.41937 1.25272 1.07519 1.46271 1.19646 1.09624 0.85218 1.31686 0.90303 1.26013 0.95915 1.03720 0.95576 1.69663 1.17403 1.35819 1.33220 0.84958 0.77914 0.76948 0.78733 1.19821 1.19622 1.19639 1.48982 1.19334 1.24876 1.22593 1.23071 1.00523 0.90625 0.95138 1.21880 0.98868 1.06872 1.03761 1.24418 1.00029 0.93353 0.97011 1.77328 1.04393 1.25530 1.09053 0.91469 0.89354 0.90310 0.86483 0.87585 0.75716 0.91559 0.89611 0.92655 0.90059 0.92385 0.83587 0.87805 0.91042 0.76964 0.91323 0.78578 0.81552 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.57 71.98 0.62 -1.97 16 2 C 0.18 3.29 3.05 44.99 0.14 3.43 16 3 H 0.09 2.01 7.96 -2.38 -0.02 1.99 16 4 C -0.15 -2.44 5.50 29.85 0.16 -2.27 16 5 C 0.53 10.61 7.55 87.66 0.66 11.28 16 6 O -0.57 -14.63 13.97 -3.04 -0.04 -14.67 16 7 N -0.72 -13.27 4.99 -463.06 -2.31 -15.58 16 8 C 0.12 2.34 5.31 86.38 0.46 2.80 16 9 C 0.08 1.50 2.81 44.91 0.13 1.62 16 10 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 11 C -0.14 -2.52 9.42 71.98 0.68 -1.84 16 12 N -0.68 -18.74 5.93 -495.59 -2.94 -21.68 16 13 C 0.06 1.96 5.96 85.56 0.51 2.47 16 14 C 0.44 19.60 7.82 87.66 0.69 20.29 16 15 O -0.62 -32.89 15.78 -3.08 -0.05 -32.94 16 16 N -0.57 -28.17 5.29 -306.99 -1.62 -29.79 16 17 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 21 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 N -0.38 -7.42 3.53 -327.50 -1.16 -8.58 16 26 C 0.05 0.84 10.59 83.54 0.88 1.72 16 27 C -0.28 -4.50 10.80 21.99 0.24 -4.26 16 28 C 0.04 0.68 12.03 85.24 1.03 1.70 16 29 N -0.34 -7.95 12.58 -57.02 -0.72 -8.66 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.72 5.95 -2.39 -0.01 1.70 16 32 H 0.08 0.99 7.15 -2.39 -0.02 0.97 16 33 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 6.62 7.37 -92.71 -0.68 5.93 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 41 H 0.34 9.78 6.41 -89.69 -0.58 9.20 16 42 H 0.10 2.92 7.44 -2.39 -0.02 2.90 16 43 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 44 H 0.40 18.48 7.90 -92.71 -0.73 17.75 16 45 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 46 H 0.20 1.95 7.26 -2.91 -0.02 1.93 16 47 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 48 H 0.20 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.84 399.87 -0.05 -72.89 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.99 Total: 45.97 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 7.47 Total: 17.29 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -8.46 Total: -132.50 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.09 Total: -47.61 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.84 -0.05 -72.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690637517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.066 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds