Wall clock time and date at job start Tue Mar 31 2020 19:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47649 * 305.00018 * 9 8 6 11 11 C 1.53006 * 109.47294 * 64.99627 * 9 8 6 12 12 N 1.46501 * 109.47644 * 184.99474 * 9 8 6 13 13 C 1.34947 * 126.04194 * 274.72483 * 12 9 8 14 14 C 1.35313 * 107.74798 * 179.83227 * 13 12 9 15 15 C 1.39875 * 107.91838 * 0.41950 * 14 13 12 16 16 N 1.30837 * 108.19918 * 359.73813 * 15 14 13 17 17 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 18 18 C 1.46901 * 111.00002 * 274.99677 * 17 2 1 19 19 C 1.50699 * 109.47447 * 179.97438 * 18 17 2 20 20 O 1.21296 * 119.99473 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00376 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00436 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00419 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00153 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47098 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47162 * 119.99654 * 26 24 22 29 29 H 1.48494 * 109.47116 * 239.99569 * 26 24 22 30 30 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 32 32 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 34 34 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 37 37 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 38 38 H 1.08994 * 109.47528 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47039 * 300.00626 * 11 9 8 40 40 H 1.09008 * 109.46770 * 60.00183 * 11 9 8 41 41 H 1.08006 * 126.12424 * 359.97438 * 13 12 9 42 42 H 1.07996 * 126.04194 * 180.15535 * 14 13 12 43 43 H 1.07996 * 125.89365 * 179.71050 * 15 14 13 44 44 H 1.00897 * 111.00541 * 151.04270 * 17 2 1 45 45 H 1.09001 * 109.47268 * 300.00240 * 18 17 2 46 46 H 1.08998 * 109.47179 * 59.99719 * 18 17 2 47 47 H 0.97005 * 120.00056 * 0.02562 * 21 19 18 48 48 H 0.97002 * 120.00086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 1 5.6879 -3.2080 -3.4829 11 6 5.8855 -1.3906 -4.6224 12 7 7.6323 -2.4493 -3.2774 13 6 8.5893 -1.5602 -3.6164 14 6 9.7901 -2.1290 -3.3606 15 6 9.5593 -3.4133 -2.8567 16 7 8.2662 -3.6063 -2.8064 17 7 2.0196 -0.6926 1.1993 18 6 2.0825 0.2224 2.3468 19 6 2.5874 -0.5220 3.5559 20 8 2.8677 -1.6990 3.4700 21 7 2.7284 0.1202 4.7324 22 6 3.1882 -0.5570 5.8322 23 1 3.4370 -1.6051 5.7560 24 6 3.3330 0.1050 7.0453 25 7 3.0298 1.3803 7.1383 26 14 3.9589 -0.8178 8.5440 27 1 4.2264 -2.2320 8.1785 28 1 5.2125 -0.1853 9.0270 29 1 2.9346 -0.7699 9.6182 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 6.1067 -0.5264 -2.0889 37 1 5.9679 -2.0904 -1.2506 38 1 6.2495 -1.9009 -5.5140 39 1 4.8095 -1.2372 -4.7047 40 1 6.3838 -0.4257 -4.5276 41 1 8.4258 -0.5708 -4.0176 42 1 10.7560 -1.6737 -3.5214 43 1 10.3176 -4.1231 -2.5608 44 1 2.9172 -1.1206 1.0286 45 1 2.7589 1.0461 2.1182 46 1 1.0872 0.6162 2.5525 47 1 2.5045 1.0615 4.8010 48 1 3.1312 1.8425 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690637519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:01 Heat of formation + Delta-G solvation = 5.924810 kcal Electronic energy + Delta-G solvation = -28434.172835 eV Core-core repulsion = 24332.957293 eV Total energy + Delta-G solvation = -4101.215542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47588 -40.17978 -38.53080 -37.20552 -35.61764 -34.23877 -33.81875 -31.42884 -31.05616 -30.53676 -30.03856 -28.59786 -26.71543 -25.89807 -24.05038 -23.54906 -21.28536 -20.94658 -20.73840 -20.01579 -19.36035 -18.03901 -17.87263 -17.12453 -16.43179 -16.32586 -15.79401 -15.53814 -15.36698 -15.04920 -14.72039 -14.52904 -14.18883 -13.99694 -13.90010 -13.54890 -13.43410 -13.22054 -13.01362 -12.88202 -12.74561 -12.59722 -12.12512 -11.96314 -11.86193 -11.79593 -11.71345 -11.57546 -11.47284 -11.13651 -10.93795 -10.87676 -10.37680 -10.27036 -10.18074 -9.65737 -9.57123 -9.35444 -8.84467 -8.54474 -8.20466 -8.01840 -6.46864 -3.87786 1.66137 2.13614 2.30778 2.65020 2.95584 3.13059 3.24291 3.31537 3.83461 3.97618 4.09323 4.22393 4.28204 4.44150 4.55770 4.59761 4.72243 4.79285 4.90376 5.01483 5.09246 5.10877 5.18927 5.21656 5.36743 5.38989 5.42843 5.45166 5.60787 5.60978 5.66012 5.70399 5.77625 5.79663 5.88788 5.91138 6.07887 6.17999 6.28534 6.43172 6.78515 7.06732 7.12158 7.48697 7.50790 7.50895 7.87224 8.01007 8.55223 9.12846 9.48267 9.99266 10.70800 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.002314 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.830716 B =12095.321104 C =14487.634128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.728 5.728 6 C 0.525 3.475 7 O -0.538 6.538 8 C -0.158 4.158 9 C 0.177 3.823 10 H 0.112 0.888 11 C -0.168 4.168 12 N -0.367 5.367 13 C 0.054 3.946 14 C -0.277 4.277 15 C 0.043 3.957 16 N -0.295 5.295 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.438 3.562 20 O -0.582 6.582 21 N -0.562 5.562 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.171 0.829 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.347 0.653 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 2.173 -22.465 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.380 5.380 6 C 0.311 3.689 7 O -0.415 6.415 8 C -0.199 4.199 9 C 0.075 3.925 10 H 0.130 0.870 11 C -0.226 4.226 12 N -0.150 5.150 13 C -0.092 4.092 14 C -0.306 4.306 15 C -0.143 4.143 16 N -0.115 5.115 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.188 0.812 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.130 0.124 -22.572 22.948 hybrid contribution 1.900 1.675 1.012 2.728 sum 6.030 1.799 -21.561 22.461 Atomic orbital electron populations 1.21738 0.93299 1.03028 1.01600 1.21817 0.97232 0.95888 0.88984 0.93334 1.21647 0.78941 1.02223 0.97747 1.46046 1.08362 1.60017 1.23608 1.20175 0.89230 0.77330 0.82196 1.90693 1.70321 1.47413 1.33108 1.22105 0.93170 1.03790 1.00821 1.20912 0.75111 1.01838 0.94680 0.86991 1.22326 1.05266 0.99036 0.95925 1.48941 1.06021 1.10955 1.49083 1.22502 0.88854 0.96877 1.01002 1.21524 0.98287 0.97017 1.13774 1.23923 0.93612 0.97253 0.99558 1.77428 1.07757 1.05611 1.20742 1.60116 1.34804 1.32298 1.02714 1.21759 1.01538 0.93746 0.91282 1.19785 0.85161 0.88229 0.84470 1.90539 1.55313 1.16076 1.84725 1.41871 1.57621 1.12419 1.07988 1.19755 1.39891 0.96467 0.86771 0.87847 1.25270 0.97596 0.95787 0.99267 1.69617 1.48612 1.08870 1.27156 0.85799 0.78245 0.79666 0.80657 1.19173 1.20733 1.20697 0.91924 0.92467 0.91466 0.90659 0.90121 0.76385 0.88139 0.87487 0.91562 0.87987 0.92116 0.81201 0.83634 0.80087 0.83192 0.93866 0.89354 0.77472 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 2 C 0.07 0.77 2.81 -67.72 -0.19 0.58 16 3 H 0.05 0.48 7.80 -51.93 -0.40 0.07 16 4 C 0.12 1.20 5.31 -4.04 -0.02 1.18 16 5 N -0.73 -7.10 4.99 -60.29 -0.30 -7.40 16 6 C 0.52 5.45 7.55 -10.99 -0.08 5.37 16 7 O -0.54 -6.97 13.97 5.55 0.08 -6.89 16 8 C -0.16 -1.35 5.50 -27.88 -0.15 -1.51 16 9 C 0.18 1.64 3.05 -67.93 -0.21 1.43 16 10 H 0.11 1.23 7.96 -51.93 -0.41 0.81 16 11 C -0.17 -1.25 8.57 37.16 0.32 -0.93 16 12 N -0.37 -3.77 3.53 -54.86 -0.19 -3.97 16 13 C 0.05 0.45 10.59 -17.22 -0.18 0.27 16 14 C -0.28 -2.37 10.80 -40.01 -0.43 -2.80 16 15 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 16 N -0.29 -3.64 12.57 30.62 0.39 -3.25 16 17 N -0.66 -9.81 5.92 -107.99 -0.64 -10.45 16 18 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 19 C 0.44 9.99 7.82 -10.99 -0.09 9.90 16 20 O -0.58 -15.47 15.78 5.54 0.09 -15.38 16 21 N -0.56 -13.88 5.29 -10.96 -0.06 -13.93 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.56 7.37 -40.82 -0.30 3.26 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.89 5.95 -51.93 -0.31 0.58 16 40 H 0.06 0.35 7.15 -51.92 -0.37 -0.03 16 41 H 0.17 0.88 7.26 -52.48 -0.38 0.50 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.35 5.27 6.41 -39.29 -0.25 5.02 16 45 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 47 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -34.08 399.87 -7.34 -41.42 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -7.26 Total: 15.88 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.17 Total: 5.55 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.08 Total: -62.40 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.27 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.08 -7.34 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690637519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.348 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds