Wall clock time and date at job start Tue Mar 31 2020 19:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47649 * 305.00018 * 9 8 6 11 11 C 1.53006 * 109.47294 * 64.99627 * 9 8 6 12 12 N 1.46501 * 109.47644 * 184.99474 * 9 8 6 13 13 C 1.34947 * 126.04194 * 274.72483 * 12 9 8 14 14 C 1.35313 * 107.74798 * 179.83227 * 13 12 9 15 15 C 1.39875 * 107.91838 * 0.41950 * 14 13 12 16 16 N 1.30837 * 108.19918 * 359.73813 * 15 14 13 17 17 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 18 18 C 1.46901 * 111.00002 * 274.99677 * 17 2 1 19 19 C 1.50699 * 109.47447 * 179.97438 * 18 17 2 20 20 O 1.21296 * 119.99473 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00376 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00436 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99808 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00419 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00153 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47098 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47162 * 119.99654 * 26 24 22 29 29 H 1.48494 * 109.47116 * 239.99569 * 26 24 22 30 30 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 32 32 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 34 34 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 37 37 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 38 38 H 1.08994 * 109.47528 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47039 * 300.00626 * 11 9 8 40 40 H 1.09008 * 109.46770 * 60.00183 * 11 9 8 41 41 H 1.08006 * 126.12424 * 359.97438 * 13 12 9 42 42 H 1.07996 * 126.04194 * 180.15535 * 14 13 12 43 43 H 1.07996 * 125.89365 * 179.71050 * 15 14 13 44 44 H 1.00897 * 111.00541 * 151.04270 * 17 2 1 45 45 H 1.09001 * 109.47268 * 300.00240 * 18 17 2 46 46 H 1.08998 * 109.47179 * 59.99719 * 18 17 2 47 47 H 0.97005 * 120.00056 * 0.02562 * 21 19 18 48 48 H 0.97002 * 120.00086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 1 5.6879 -3.2080 -3.4829 11 6 5.8855 -1.3906 -4.6224 12 7 7.6323 -2.4493 -3.2774 13 6 8.5893 -1.5602 -3.6164 14 6 9.7901 -2.1290 -3.3606 15 6 9.5593 -3.4133 -2.8567 16 7 8.2662 -3.6063 -2.8064 17 7 2.0196 -0.6926 1.1993 18 6 2.0825 0.2224 2.3468 19 6 2.5874 -0.5220 3.5559 20 8 2.8677 -1.6990 3.4700 21 7 2.7284 0.1202 4.7324 22 6 3.1882 -0.5570 5.8322 23 1 3.4370 -1.6051 5.7560 24 6 3.3330 0.1050 7.0453 25 7 3.0298 1.3803 7.1383 26 14 3.9589 -0.8178 8.5440 27 1 4.2264 -2.2320 8.1785 28 1 5.2125 -0.1853 9.0270 29 1 2.9346 -0.7699 9.6182 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 6.1067 -0.5264 -2.0889 37 1 5.9679 -2.0904 -1.2506 38 1 6.2495 -1.9009 -5.5140 39 1 4.8095 -1.2372 -4.7047 40 1 6.3838 -0.4257 -4.5276 41 1 8.4258 -0.5708 -4.0176 42 1 10.7560 -1.6737 -3.5214 43 1 10.3176 -4.1231 -2.5608 44 1 2.9172 -1.1206 1.0286 45 1 2.7589 1.0461 2.1182 46 1 1.0872 0.6162 2.5525 47 1 2.5045 1.0615 4.8010 48 1 3.1312 1.8425 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690637519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:00 Heat of formation + Delta-G solvation = -20.302485 kcal Electronic energy + Delta-G solvation = -28435.310136 eV Core-core repulsion = 24332.957293 eV Total energy + Delta-G solvation = -4102.352843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17673 -41.03400 -40.18950 -38.34941 -36.38534 -35.97974 -35.00948 -33.29513 -32.21969 -31.30173 -30.72828 -29.28377 -28.14789 -26.91691 -25.66878 -24.28736 -21.98292 -21.76634 -21.62749 -21.14398 -20.70791 -19.93512 -18.72353 -18.12792 -17.48815 -17.26051 -16.93749 -16.72472 -16.52730 -16.25234 -15.86441 -15.70369 -15.57773 -15.13034 -14.84691 -14.69891 -14.34343 -14.12737 -13.89606 -13.77820 -13.69197 -13.51043 -13.46475 -13.30002 -12.94434 -12.82441 -12.79391 -12.58466 -12.50038 -12.40798 -12.25044 -12.12822 -11.87914 -11.59419 -11.52437 -11.04194 -10.40979 -10.35893 -10.19246 -10.02329 -9.52549 -9.38246 -8.48170 -5.96464 0.98173 1.35426 1.41465 1.44130 1.48359 1.55028 1.97785 2.04048 2.18043 2.28132 2.86381 3.19526 3.40123 3.46907 3.58857 3.66815 3.78260 3.98677 4.07645 4.13314 4.17361 4.25339 4.38422 4.39355 4.44534 4.46043 4.59384 4.63291 4.71998 4.77261 4.81716 4.84180 4.92950 4.95888 5.05049 5.15015 5.18022 5.30626 5.40375 5.45333 5.76386 5.87224 6.08200 6.15884 6.32675 6.34226 6.59034 6.80187 7.06649 7.12064 7.55524 8.11005 8.69289 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.002314 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.830716 B =12095.321104 C =14487.634128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.071 0.929 4 C 0.123 3.877 5 N -0.723 5.723 6 C 0.525 3.475 7 O -0.566 6.566 8 C -0.148 4.148 9 C 0.177 3.823 10 H 0.084 0.916 11 C -0.158 4.158 12 N -0.375 5.375 13 C 0.056 3.944 14 C -0.285 4.285 15 C 0.034 3.966 16 N -0.348 5.348 17 N -0.682 5.682 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.407 0.593 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.205 0.795 42 H 0.169 0.831 43 H 0.201 0.799 44 H 0.342 0.658 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 4.412 -23.151 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.376 5.376 6 C 0.312 3.688 7 O -0.445 6.445 8 C -0.189 4.189 9 C 0.075 3.925 10 H 0.102 0.898 11 C -0.215 4.215 12 N -0.158 5.158 13 C -0.090 4.090 14 C -0.314 4.314 15 C -0.151 4.151 16 N -0.170 5.170 17 N -0.318 5.318 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.462 4.462 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.222 0.778 42 H 0.187 0.813 43 H 0.218 0.782 44 H 0.163 0.837 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.729 2.399 -23.259 23.856 hybrid contribution 1.707 0.956 1.163 2.276 sum 6.436 3.355 -22.096 23.257 Atomic orbital electron populations 1.21756 0.92741 1.02447 1.02680 1.21875 0.97514 0.96547 0.87252 0.91100 1.21578 0.79045 1.01318 0.98098 1.46018 1.08290 1.59691 1.23562 1.20432 0.89876 0.76702 0.81778 1.90687 1.70993 1.48560 1.34275 1.22033 0.91875 1.04978 0.99985 1.20870 0.74868 1.00959 0.95852 0.89784 1.22236 1.04650 0.99821 0.94840 1.48996 1.06383 1.10983 1.49442 1.23122 0.88289 0.97729 0.99845 1.21892 0.99518 0.96511 1.13494 1.24414 0.93346 0.98432 0.98913 1.77372 1.09127 1.07484 1.22989 1.60106 1.34791 1.33022 1.03853 1.21612 1.02618 0.93649 0.88842 1.20934 0.83220 0.87984 0.85524 1.90511 1.56687 1.18315 1.85634 1.41928 1.58212 1.12594 1.08204 1.19663 1.42039 0.95855 0.88634 0.90536 1.25992 0.97255 0.96610 1.01265 1.69665 1.48613 1.09593 1.28105 0.84913 0.78234 0.78035 0.77432 1.19981 1.19486 1.19670 0.92362 0.89850 0.92929 0.89071 0.92130 0.75708 0.85420 0.88644 0.91658 0.89186 0.89579 0.77814 0.81346 0.78241 0.83720 0.90800 0.87714 0.76887 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.41 71.98 0.68 -1.84 16 2 C 0.08 1.50 2.81 44.92 0.13 1.62 16 3 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 4 C 0.12 2.33 5.31 86.38 0.46 2.79 16 5 N -0.72 -13.23 4.99 -463.05 -2.31 -15.54 16 6 C 0.53 10.61 7.55 87.66 0.66 11.27 16 7 O -0.57 -14.65 13.97 -3.04 -0.04 -14.69 16 8 C -0.15 -2.43 5.50 29.85 0.16 -2.27 16 9 C 0.18 3.25 3.05 44.99 0.14 3.39 16 10 H 0.08 1.98 7.96 -2.39 -0.02 1.96 16 11 C -0.16 -2.15 8.57 71.98 0.62 -1.54 16 12 N -0.38 -7.50 3.53 -327.48 -1.16 -8.66 16 13 C 0.06 0.82 10.59 83.54 0.88 1.70 16 14 C -0.29 -4.39 10.80 21.99 0.24 -4.15 16 15 C 0.03 0.67 12.03 85.24 1.03 1.69 16 16 N -0.35 -8.76 12.57 -57.02 -0.72 -9.48 16 17 N -0.68 -19.31 5.92 -495.59 -2.94 -22.25 16 18 C 0.06 2.01 5.96 85.56 0.51 2.52 16 19 C 0.44 19.90 7.82 87.66 0.69 20.59 16 20 O -0.62 -33.96 15.78 -3.08 -0.05 -34.01 16 21 N -0.57 -28.45 5.29 -306.99 -1.62 -30.07 16 22 C -0.33 -18.60 9.68 84.04 0.81 -17.78 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.60 13.05 21.66 0.28 -48.31 16 26 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.06 1.12 7.45 -2.38 -0.02 1.10 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 6.60 7.37 -92.71 -0.68 5.91 16 36 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.51 5.95 -2.39 -0.01 1.49 16 40 H 0.09 0.72 7.15 -2.38 -0.02 0.70 16 41 H 0.21 1.36 7.26 -2.91 -0.02 1.34 16 42 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.34 10.18 6.41 -89.70 -0.58 9.60 16 45 H 0.07 1.87 8.06 -2.39 -0.02 1.86 16 46 H 0.10 2.95 7.44 -2.39 -0.02 2.93 16 47 H 0.40 18.59 7.90 -92.70 -0.73 17.86 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -75.90 399.87 -0.05 -75.95 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: -0.99 Total: 44.64 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 7.47 Total: 17.87 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -8.46 Total: -134.32 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.09 Total: -48.70 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -75.90 -0.05 -75.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690637519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.647 kcal (2) G-P(sol) polarization free energy of solvation -75.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds