Wall clock time and date at job start Tue Mar 31 2020 20:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47023 * 2 1 4 4 C 1.35039 * 124.88325 * 124.99986 * 3 2 1 5 5 C 1.35362 * 107.22755 * 180.22827 * 4 3 2 6 6 C 1.41505 * 105.50435 * 359.60377 * 5 4 3 7 7 C 1.47703 * 126.52166 * 180.13171 * 6 5 4 8 8 O 1.21576 * 120.00118 * 0.29523 * 7 6 5 9 9 N 1.34777 * 120.00387 * 180.29539 * 7 6 5 10 10 C 1.46497 * 120.00215 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47097 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47010 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.47360 * 55.00037 * 12 11 10 14 14 C 1.53002 * 109.46896 * 174.99780 * 12 11 10 15 15 N 1.46899 * 109.47203 * 294.99861 * 12 11 10 16 16 C 1.46900 * 111.00222 * 155.00119 * 15 12 11 17 17 C 1.50699 * 109.47157 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99831 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99781 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00432 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99724 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99852 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99953 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47387 * 90.00070 * 24 22 20 26 26 H 1.48507 * 109.46869 * 209.99392 * 24 22 20 27 27 H 1.48496 * 109.47338 * 329.99418 * 24 22 20 28 28 N 1.28462 * 124.88486 * 304.96356 * 3 2 1 29 29 H 1.08995 * 109.47463 * 60.00214 * 1 2 3 30 30 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99562 * 1 2 3 32 32 H 1.08997 * 109.47470 * 239.99992 * 2 1 3 33 33 H 1.09006 * 109.46791 * 119.99989 * 2 1 3 34 34 H 1.08002 * 126.38339 * 359.96080 * 4 3 2 35 35 H 1.07997 * 127.25094 * 179.69678 * 5 4 3 36 36 H 0.97003 * 119.99918 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47560 * 300.00565 * 10 9 7 38 38 H 1.09008 * 109.46841 * 60.00204 * 10 9 7 39 39 H 1.09003 * 109.46845 * 299.99918 * 11 10 9 40 40 H 1.08995 * 109.47182 * 60.00388 * 11 10 9 41 41 H 1.08998 * 109.47562 * 299.99744 * 14 12 11 42 42 H 1.09004 * 109.47155 * 60.00573 * 14 12 11 43 43 H 1.09005 * 109.46673 * 179.97438 * 14 12 11 44 44 H 1.00900 * 111.00087 * 278.95546 * 15 12 11 45 45 H 1.09004 * 109.47164 * 300.00565 * 16 15 12 46 46 H 1.09006 * 109.47248 * 59.99690 * 16 15 12 47 47 H 0.97008 * 120.00006 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99920 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9074 5 6 3.0787 3.1935 0.5741 6 6 2.3013 3.4121 -0.5879 7 6 2.1870 4.6756 -1.3442 8 8 2.8035 5.6588 -0.9820 9 7 1.3991 4.7387 -2.4359 10 6 1.2853 5.9921 -3.1857 11 6 0.3362 5.7940 -4.3693 12 6 0.2178 7.1029 -5.1527 13 1 1.2114 7.4427 -5.4446 14 6 -0.6307 6.8727 -6.4049 15 7 -0.4203 8.1224 -4.3093 16 6 -0.0397 9.4746 -4.7390 17 6 -0.7115 10.4912 -3.8522 18 8 -1.4356 10.1252 -2.9507 19 7 -0.5067 11.8070 -4.0603 20 6 -1.1174 12.7317 -3.2533 21 1 -1.7622 12.4060 -2.4505 22 6 -0.9067 14.0883 -3.4682 23 7 -1.4925 14.9748 -2.6949 24 14 0.2080 14.6518 -4.8571 25 1 -0.5947 14.8343 -6.0931 26 1 0.8469 15.9404 -4.4872 27 1 1.2580 13.6291 -5.0951 28 7 1.6939 2.2752 -0.8636 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.3118 1.3752 1.7456 35 1 3.7044 3.9096 1.0861 36 1 0.9068 3.9544 -2.7247 37 1 0.8934 6.7719 -2.5327 38 1 2.2685 6.2862 -3.5532 39 1 0.7278 5.0141 -5.0224 40 1 -0.6469 5.5002 -4.0015 41 1 -0.1573 6.1163 -7.0308 42 1 -1.6245 6.5329 -6.1130 43 1 -0.7154 7.8054 -6.9628 44 1 -1.4233 8.0130 -4.3061 45 1 1.0420 9.5880 -4.6664 46 1 -0.3527 9.6294 -5.7716 47 1 0.0728 12.0996 -4.7811 48 1 -1.3458 15.9217 -2.8451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690867109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:59 Heat of formation + Delta-G solvation = 6.229643 kcal Electronic energy + Delta-G solvation = -27996.082256 eV Core-core repulsion = 23894.879932 eV Total energy + Delta-G solvation = -4101.202324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91620 -39.39048 -38.56058 -37.12427 -34.97892 -34.76940 -33.88262 -31.78419 -31.49263 -30.93117 -30.38551 -28.77268 -26.45369 -25.36327 -23.87276 -23.21528 -22.02742 -21.65724 -20.89274 -19.89323 -19.30354 -18.33071 -18.09952 -16.90408 -16.36525 -16.02524 -15.80307 -15.63721 -15.25554 -14.96753 -14.77161 -14.60823 -14.22812 -14.01165 -13.94649 -13.40472 -13.33462 -13.26039 -13.02782 -12.85098 -12.74142 -12.66266 -12.32248 -12.14134 -11.97207 -11.85792 -11.59865 -11.36235 -11.21064 -11.12826 -11.10013 -10.86815 -10.54586 -10.11771 -9.91970 -9.54878 -9.51383 -9.33736 -8.96656 -8.52640 -8.13214 -8.05069 -6.25473 -3.76532 1.39796 1.90955 2.08710 3.07834 3.10861 3.16593 3.19265 3.40077 3.81150 3.90943 4.13474 4.16908 4.31959 4.44639 4.47453 4.57619 4.72759 4.87544 4.91721 5.02258 5.08968 5.17471 5.20704 5.27789 5.32477 5.38558 5.45527 5.53420 5.55616 5.57279 5.64605 5.74251 5.78105 5.93029 6.00031 6.05980 6.13236 6.15576 6.31318 6.43402 6.49348 7.17131 7.40948 7.63504 7.65386 7.70453 8.20829 8.23510 8.65948 9.01128 9.48615 9.89470 10.87800 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.001866 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.958350 B =15002.284402 C =15757.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.284 5.284 4 C -0.022 4.022 5 C -0.178 4.178 6 C -0.014 4.014 7 C 0.600 3.400 8 O -0.528 6.528 9 N -0.718 5.718 10 C 0.122 3.878 11 C -0.115 4.115 12 C 0.085 3.915 13 H 0.080 0.920 14 C -0.183 4.183 15 N -0.662 5.662 16 C 0.048 3.952 17 C 0.451 3.549 18 O -0.564 6.564 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 N -0.261 5.261 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.235 -32.898 -1.766 33.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.073 5.073 4 C -0.164 4.164 5 C -0.206 4.206 6 C -0.175 4.175 7 C 0.384 3.616 8 O -0.402 6.402 9 N -0.369 5.369 10 C -0.001 4.001 11 C -0.154 4.154 12 C -0.026 4.026 13 H 0.098 0.902 14 C -0.242 4.242 15 N -0.295 5.295 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.194 1.194 28 N -0.098 5.098 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.237 0.763 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.171 0.829 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.842 -32.823 -1.094 33.765 hybrid contribution 0.695 0.650 -1.399 1.692 sum 8.537 -32.173 -2.493 33.380 Atomic orbital electron populations 1.22084 0.92987 1.03429 1.04122 1.22006 0.96798 0.76765 1.04705 1.45616 1.32395 1.10357 1.18909 1.22877 0.99384 0.95502 0.98633 1.21822 1.04556 0.96003 0.98234 1.22031 1.02657 0.93153 0.99616 1.16876 0.79486 0.85359 0.79889 1.90837 1.45876 1.35528 1.67990 1.45884 1.47619 1.15074 1.28322 1.21431 0.99456 0.85749 0.93445 1.21744 1.00136 0.97059 0.96418 1.21509 0.98524 0.91987 0.90578 0.90170 1.22516 1.00806 1.02057 0.98798 1.60189 1.15413 1.00811 1.53076 1.21738 1.00974 0.89260 0.96530 1.19737 0.86140 0.82798 0.87697 1.90567 1.40654 1.79473 1.33833 1.42210 1.44378 1.05603 1.30963 1.19434 1.25758 0.85617 1.12395 0.86304 1.25041 0.97810 0.95583 0.97812 1.69625 1.42922 1.01672 1.38055 0.86666 0.80919 0.79295 0.82484 1.19744 1.20203 1.19437 1.73415 1.22106 0.98205 1.16060 0.90681 0.90221 0.91726 0.88916 0.87894 0.80154 0.81973 0.76339 0.89083 0.91840 0.91454 0.91030 0.92178 0.92231 0.92425 0.82857 0.89448 0.93779 0.79725 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.02 37.16 0.37 -0.26 16 2 C 0.12 0.41 7.12 -4.04 -0.03 0.38 16 3 N -0.28 -2.19 3.41 -61.33 -0.21 -2.40 16 4 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -1.89 10.81 -39.36 -0.43 -2.31 16 6 C -0.01 -0.18 7.13 -82.76 -0.59 -0.77 16 7 C 0.60 8.81 7.82 -12.39 -0.10 8.71 16 8 O -0.53 -9.73 16.93 5.30 0.09 -9.64 16 9 N -0.72 -8.76 5.55 -61.29 -0.34 -9.10 16 10 C 0.12 1.56 5.56 -4.04 -0.02 1.54 16 11 C -0.12 -1.15 5.01 -26.73 -0.13 -1.28 16 12 C 0.09 0.94 2.59 -67.71 -0.18 0.77 16 13 H 0.08 0.87 7.80 -51.93 -0.40 0.46 16 14 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 15 N -0.66 -10.06 5.33 -107.99 -0.58 -10.64 16 16 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 17 C 0.45 10.46 7.82 -10.98 -0.09 10.37 16 18 O -0.56 -15.48 15.78 5.55 0.09 -15.40 16 19 N -0.59 -14.46 5.09 -10.97 -0.06 -14.51 16 20 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 21 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 22 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -26.32 13.96 55.50 0.77 -25.54 16 24 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -5.55 6.52 56.52 0.37 -5.19 16 28 N -0.26 -2.75 11.36 33.42 0.38 -2.38 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.08 8.04 -51.93 -0.42 -0.34 16 34 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.40 4.00 8.20 -40.82 -0.33 3.66 16 37 H 0.09 1.49 7.75 -51.93 -0.40 1.08 16 38 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 43 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 44 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 45 H 0.09 1.34 8.06 -51.93 -0.42 0.93 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 47 H 0.37 7.94 5.76 -40.82 -0.24 7.70 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -37.78 405.62 -7.28 -45.06 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.51 Total: 15.05 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -1.32 Total: 8.27 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.03 Total: -64.57 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.18 Total: -25.04 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.78 -7.28 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690867109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.294 kcal (2) G-P(sol) polarization free energy of solvation -37.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds