Wall clock time and date at job start Tue Mar 31 2020 20:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47023 * 2 1 4 4 C 1.35039 * 124.88325 * 124.99986 * 3 2 1 5 5 C 1.35362 * 107.22755 * 180.22827 * 4 3 2 6 6 C 1.41505 * 105.50435 * 359.60377 * 5 4 3 7 7 C 1.47703 * 126.52166 * 180.13171 * 6 5 4 8 8 O 1.21576 * 120.00118 * 0.29523 * 7 6 5 9 9 N 1.34777 * 120.00387 * 180.29539 * 7 6 5 10 10 C 1.46497 * 120.00215 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47097 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47010 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.47360 * 55.00037 * 12 11 10 14 14 C 1.53002 * 109.46896 * 174.99780 * 12 11 10 15 15 N 1.46899 * 109.47203 * 294.99861 * 12 11 10 16 16 C 1.46900 * 111.00222 * 155.00119 * 15 12 11 17 17 C 1.50699 * 109.47157 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99917 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99831 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99781 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00432 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99724 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99852 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99953 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47387 * 90.00070 * 24 22 20 26 26 H 1.48507 * 109.46869 * 209.99392 * 24 22 20 27 27 H 1.48496 * 109.47338 * 329.99418 * 24 22 20 28 28 N 1.28462 * 124.88486 * 304.96356 * 3 2 1 29 29 H 1.08995 * 109.47463 * 60.00214 * 1 2 3 30 30 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47188 * 299.99562 * 1 2 3 32 32 H 1.08997 * 109.47470 * 239.99992 * 2 1 3 33 33 H 1.09006 * 109.46791 * 119.99989 * 2 1 3 34 34 H 1.08002 * 126.38339 * 359.96080 * 4 3 2 35 35 H 1.07997 * 127.25094 * 179.69678 * 5 4 3 36 36 H 0.97003 * 119.99918 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47560 * 300.00565 * 10 9 7 38 38 H 1.09008 * 109.46841 * 60.00204 * 10 9 7 39 39 H 1.09003 * 109.46845 * 299.99918 * 11 10 9 40 40 H 1.08995 * 109.47182 * 60.00388 * 11 10 9 41 41 H 1.08998 * 109.47562 * 299.99744 * 14 12 11 42 42 H 1.09004 * 109.47155 * 60.00573 * 14 12 11 43 43 H 1.09005 * 109.46673 * 179.97438 * 14 12 11 44 44 H 1.00900 * 111.00087 * 278.95546 * 15 12 11 45 45 H 1.09004 * 109.47164 * 300.00565 * 16 15 12 46 46 H 1.09006 * 109.47248 * 59.99690 * 16 15 12 47 47 H 0.97008 * 120.00006 * 0.02562 * 19 17 16 48 48 H 0.96994 * 119.99920 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9074 5 6 3.0787 3.1935 0.5741 6 6 2.3013 3.4121 -0.5879 7 6 2.1870 4.6756 -1.3442 8 8 2.8035 5.6588 -0.9820 9 7 1.3991 4.7387 -2.4359 10 6 1.2853 5.9921 -3.1857 11 6 0.3362 5.7940 -4.3693 12 6 0.2178 7.1029 -5.1527 13 1 1.2114 7.4427 -5.4446 14 6 -0.6307 6.8727 -6.4049 15 7 -0.4203 8.1224 -4.3093 16 6 -0.0397 9.4746 -4.7390 17 6 -0.7115 10.4912 -3.8522 18 8 -1.4356 10.1252 -2.9507 19 7 -0.5067 11.8070 -4.0603 20 6 -1.1174 12.7317 -3.2533 21 1 -1.7622 12.4060 -2.4505 22 6 -0.9067 14.0883 -3.4682 23 7 -1.4925 14.9748 -2.6949 24 14 0.2080 14.6518 -4.8571 25 1 -0.5947 14.8343 -6.0931 26 1 0.8469 15.9404 -4.4872 27 1 1.2580 13.6291 -5.0951 28 7 1.6939 2.2752 -0.8636 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.3118 1.3752 1.7456 35 1 3.7044 3.9096 1.0861 36 1 0.9068 3.9544 -2.7247 37 1 0.8934 6.7719 -2.5327 38 1 2.2685 6.2862 -3.5532 39 1 0.7278 5.0141 -5.0224 40 1 -0.6469 5.5002 -4.0015 41 1 -0.1573 6.1163 -7.0308 42 1 -1.6245 6.5329 -6.1130 43 1 -0.7154 7.8054 -6.9628 44 1 -1.4233 8.0130 -4.3061 45 1 1.0420 9.5880 -4.6664 46 1 -0.3527 9.6294 -5.7716 47 1 0.0728 12.0996 -4.7811 48 1 -1.3458 15.9217 -2.8451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690867109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:58 Heat of formation + Delta-G solvation = -25.474583 kcal Electronic energy + Delta-G solvation = -27997.457054 eV Core-core repulsion = 23894.879932 eV Total energy + Delta-G solvation = -4102.577122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.61212 -40.53764 -40.29502 -38.32793 -36.11424 -35.76879 -35.45686 -33.76523 -32.75220 -31.70299 -31.03337 -29.64434 -28.07329 -26.14541 -25.47230 -24.05753 -22.85696 -22.36098 -21.81178 -21.30310 -20.78666 -20.24508 -18.88802 -17.76824 -17.57838 -17.10169 -16.98224 -16.83181 -16.62847 -16.39884 -15.88100 -15.54156 -15.30817 -15.15610 -14.93303 -14.64013 -14.48596 -14.41905 -14.26788 -14.01512 -13.88284 -13.56838 -13.28560 -13.13519 -12.96657 -12.85981 -12.66279 -12.42162 -12.33822 -12.24311 -12.17690 -11.97698 -11.85253 -11.72688 -11.51129 -11.27526 -10.43381 -10.33425 -10.24876 -10.12554 -9.93306 -9.23214 -8.41494 -6.02335 0.52576 1.20229 1.30109 1.35085 1.44376 1.56137 1.96414 2.21291 2.22949 2.37055 2.75226 3.15000 3.33101 3.45399 3.87110 3.90277 3.97811 4.06915 4.12255 4.14276 4.26257 4.31559 4.38561 4.43525 4.48724 4.56898 4.60572 4.73244 4.73951 4.78592 4.82340 4.89248 4.92188 5.04050 5.19473 5.22912 5.24500 5.33696 5.35768 5.45975 5.53301 5.91141 5.92056 6.12135 6.44454 6.46952 6.60120 6.88143 6.91668 7.18310 7.39856 7.97119 8.76366 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.001866 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.958350 B =15002.284402 C =15757.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.002 3.998 5 C -0.210 4.210 6 C -0.049 4.049 7 C 0.593 3.407 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.126 3.874 11 C -0.104 4.104 12 C 0.086 3.914 13 H 0.090 0.910 14 C -0.176 4.176 15 N -0.684 5.684 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.592 5.592 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.233 1.233 28 N -0.268 5.268 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.141 0.859 34 H 0.228 0.772 35 H 0.157 0.843 36 H 0.414 0.586 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.345 0.655 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -36.105 -4.477 37.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.066 5.066 4 C -0.141 4.141 5 C -0.239 4.239 6 C -0.207 4.207 7 C 0.379 3.621 8 O -0.458 6.458 9 N -0.356 5.356 10 C 0.003 3.997 11 C -0.142 4.142 12 C -0.024 4.024 13 H 0.108 0.892 14 C -0.234 4.234 15 N -0.316 5.316 16 C -0.069 4.069 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.234 5.234 20 C -0.458 4.458 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.156 1.156 28 N -0.106 5.106 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.164 0.836 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.780 -36.095 -3.851 37.595 hybrid contribution -0.021 1.457 -0.403 1.512 sum 9.760 -34.638 -4.254 36.238 Atomic orbital electron populations 1.22074 0.93329 1.04580 1.02452 1.22496 0.96532 0.74634 1.07364 1.46148 1.31367 1.11214 1.17824 1.23467 0.97661 0.94257 0.98681 1.22014 1.05524 0.97855 0.98469 1.21830 1.04935 0.93092 1.00879 1.17321 0.78912 0.85748 0.80135 1.90788 1.48083 1.37490 1.69441 1.45805 1.46858 1.15327 1.27599 1.21316 0.99749 0.84965 0.93651 1.21705 0.99388 0.97595 0.95507 1.21622 0.98934 0.90961 0.90892 0.89195 1.22433 1.00477 1.02726 0.97806 1.60183 1.15254 1.01007 1.55196 1.21641 1.01175 0.87847 0.96240 1.21086 0.84725 0.83348 0.87331 1.90543 1.42744 1.80400 1.36262 1.42040 1.44775 1.05481 1.31071 1.19008 1.26777 0.87480 1.12584 0.92862 1.26150 0.99394 0.94769 1.01219 1.69811 1.44754 1.02411 1.40588 0.85340 0.78905 0.79259 0.77858 1.17856 1.20017 1.15616 1.73350 1.22076 0.98084 1.17047 0.92780 0.87673 0.92935 0.87462 0.84079 0.75566 0.82561 0.74890 0.93244 0.92221 0.88201 0.91075 0.89853 0.92400 0.92593 0.83613 0.87339 0.90225 0.77470 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.02 71.98 0.72 -0.17 16 2 C 0.11 0.39 7.12 86.38 0.61 1.00 16 3 N -0.28 -3.67 3.41 -347.94 -1.19 -4.85 16 4 C 0.00 0.03 11.40 83.54 0.95 0.98 16 5 C -0.21 -4.51 10.81 22.41 0.24 -4.27 16 6 C -0.05 -1.27 7.13 42.45 0.30 -0.96 16 7 C 0.59 18.51 7.82 86.74 0.68 19.19 16 8 O -0.58 -23.08 16.93 -3.95 -0.07 -23.15 16 9 N -0.70 -17.76 5.55 -466.09 -2.59 -20.35 16 10 C 0.13 3.30 5.56 86.38 0.48 3.78 16 11 C -0.10 -1.91 5.01 30.60 0.15 -1.75 16 12 C 0.09 1.71 2.59 44.92 0.12 1.82 16 13 H 0.09 1.66 7.80 -2.39 -0.02 1.64 16 14 C -0.18 -2.72 9.16 71.98 0.66 -2.06 16 15 N -0.68 -20.35 5.33 -495.57 -2.64 -22.99 16 16 C 0.06 2.00 5.96 85.56 0.51 2.51 16 17 C 0.45 21.11 7.82 87.66 0.69 21.80 16 18 O -0.62 -35.68 15.78 -3.05 -0.05 -35.73 16 19 N -0.59 -29.10 5.09 -306.99 -1.56 -30.66 16 20 C -0.33 -20.02 10.16 84.04 0.85 -19.17 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 23 N -0.93 -57.97 13.96 21.67 0.30 -57.66 16 24 Si 0.97 40.10 27.74 68.60 1.90 42.00 16 25 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 28 N -0.27 -5.48 11.36 -48.18 -0.55 -6.03 16 29 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.14 -0.50 8.04 -2.38 -0.02 -0.52 16 34 H 0.23 0.51 8.06 -2.91 -0.02 0.48 16 35 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.41 8.20 8.20 -92.71 -0.76 7.44 16 37 H 0.05 1.72 7.75 -2.39 -0.02 1.70 16 38 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.93 8.13 -2.38 -0.02 0.91 16 43 H 0.05 0.91 7.45 -2.38 -0.02 0.89 16 44 H 0.34 10.95 8.17 -89.69 -0.73 10.21 16 45 H 0.11 3.04 8.06 -2.38 -0.02 3.02 16 46 H 0.08 2.01 7.44 -2.38 -0.02 1.99 16 47 H 0.39 15.86 5.76 -92.70 -0.53 15.33 16 48 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -93.11 405.62 -0.08 -93.19 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -1.09 Total: 44.01 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 7.44 Total: 22.22 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -8.22 Total: -142.54 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.12 Total: -58.88 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.90 Total: 42.00 kcal Total: -93.11 -0.08 -93.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690867109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.714 kcal (2) G-P(sol) polarization free energy of solvation -93.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds