Wall clock time and date at job start Tue Mar 31 2020 20:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47312 * 2 1 4 4 C 1.35035 * 124.88363 * 124.97313 * 3 2 1 5 5 C 1.35363 * 107.22828 * 179.72568 * 4 3 2 6 6 C 1.41495 * 105.50366 * 0.41886 * 5 4 3 7 7 C 1.47712 * 126.52219 * 179.84013 * 6 5 4 8 8 O 1.21573 * 119.99767 * 359.71271 * 7 6 5 9 9 N 1.34777 * 120.00297 * 179.71498 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27851 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47039 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.46949 * 184.99469 * 12 11 10 15 15 N 1.46905 * 109.46855 * 64.99825 * 12 11 10 16 16 C 1.46902 * 110.99867 * 204.99939 * 15 12 11 17 17 C 1.50699 * 109.46946 * 180.02562 * 16 15 12 18 18 O 1.21291 * 120.00278 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99949 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99491 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99733 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00618 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99576 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47258 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47139 * 120.00175 * 24 22 20 27 27 H 1.48501 * 109.47239 * 239.99820 * 24 22 20 28 28 N 1.28468 * 124.88685 * 304.97720 * 3 2 1 29 29 H 1.09007 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47423 * 299.99540 * 1 2 3 31 31 H 1.08995 * 109.47493 * 59.99513 * 1 2 3 32 32 H 1.08999 * 109.46779 * 240.00137 * 2 1 3 33 33 H 1.09006 * 109.47069 * 120.00234 * 2 1 3 34 34 H 1.08002 * 126.38735 * 0.02562 * 4 3 2 35 35 H 1.08002 * 127.24842 * 180.25530 * 5 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 38 38 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 39 39 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 40 40 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 41 41 H 1.09003 * 109.46585 * 60.00658 * 14 12 11 42 42 H 1.09008 * 109.46576 * 179.97438 * 14 12 11 43 43 H 1.08992 * 109.47820 * 300.00220 * 14 12 11 44 44 H 1.00896 * 110.99847 * 81.04941 * 15 12 11 45 45 H 1.09001 * 109.47009 * 300.00318 * 16 15 12 46 46 H 1.09003 * 109.47030 * 59.99969 * 16 15 12 47 47 H 0.97008 * 120.00392 * 0.02562 * 19 17 16 48 48 H 0.97003 * 120.00398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8744 1.8976 0.9077 5 6 3.0873 3.1904 0.5677 6 6 2.3006 3.4123 -0.5873 7 6 2.1862 4.6760 -1.3435 8 8 2.8030 5.6590 -0.9814 9 7 1.3979 4.7392 -2.4349 10 6 1.2893 5.9908 -3.1884 11 6 0.3445 5.7913 -4.3751 12 6 0.2304 7.0986 -5.1618 13 1 -0.0777 7.9005 -4.4910 14 6 -0.8082 6.9360 -6.2734 15 7 1.5337 7.4291 -5.7538 16 6 1.6532 8.8740 -5.9904 17 6 2.9995 9.1739 -6.5973 18 8 3.7823 8.2727 -6.8122 19 7 3.3338 10.4437 -6.9014 20 6 4.5589 10.7167 -7.4531 21 1 5.2558 9.9141 -7.6444 22 6 4.9036 12.0258 -7.7661 23 7 4.0558 13.0023 -7.5329 24 14 6.5725 12.3976 -8.5185 25 1 7.3354 11.1339 -8.6798 26 1 6.3858 13.0355 -9.8465 27 1 7.3228 13.3191 -7.6279 28 7 1.6937 2.2753 -0.8635 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3118 1.3751 1.7456 35 1 3.7218 3.9033 1.0734 36 1 0.9061 3.9547 -2.7240 37 1 0.8964 6.7730 -2.5388 38 1 2.2742 6.2821 -3.5532 39 1 0.7373 5.0090 -5.0248 40 1 -0.6406 5.5000 -4.0105 41 1 -1.7752 6.6908 -5.8341 42 1 -0.8897 7.8676 -6.8335 43 1 -0.5001 6.1341 -6.9442 44 1 1.6862 6.9095 -6.6051 45 1 0.8671 9.1966 -6.6732 46 1 1.5539 9.4065 -5.0445 47 1 2.7079 11.1645 -6.7293 48 1 4.2964 13.9162 -7.7518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690867110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:02 Heat of formation + Delta-G solvation = -1.021344 kcal Electronic energy + Delta-G solvation = -27928.441800 eV Core-core repulsion = 23826.925050 eV Total energy + Delta-G solvation = -4101.516750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.90418 -39.35917 -38.38920 -37.01128 -34.97410 -34.72227 -33.82599 -31.65312 -31.13304 -30.86513 -30.36140 -28.71509 -26.26847 -25.34351 -23.99793 -23.24260 -22.00614 -21.64232 -20.82704 -19.86223 -19.16722 -18.14140 -17.81678 -16.88706 -16.34444 -16.01389 -15.74397 -15.58705 -15.18651 -14.91638 -14.58379 -14.49103 -14.18518 -14.00258 -13.85443 -13.62393 -13.38185 -13.21801 -13.00013 -12.84157 -12.67805 -12.63389 -12.11083 -11.97736 -11.84721 -11.51897 -11.45658 -11.29733 -11.14136 -11.10360 -10.99722 -10.79966 -10.29306 -10.16490 -10.08857 -9.53606 -9.45754 -9.32410 -8.93534 -8.39011 -7.96539 -7.88694 -6.35727 -3.76159 1.41381 1.92440 2.09621 3.19331 3.21162 3.31303 3.39052 3.42196 3.91759 3.98290 4.15550 4.31685 4.39390 4.45453 4.48311 4.58821 4.79746 4.90648 5.02782 5.09095 5.18495 5.21060 5.25996 5.32969 5.38602 5.42015 5.50233 5.52326 5.55871 5.63662 5.74911 5.84254 5.90700 6.05951 6.14444 6.16261 6.18101 6.34585 6.36985 6.44836 6.52503 7.30104 7.43325 7.61432 7.72231 7.74424 8.13265 8.26027 8.68056 9.24490 9.61333 10.13025 10.82204 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.001828 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.524847 B =15309.776780 C =16452.018930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.284 5.284 4 C -0.022 4.022 5 C -0.178 4.178 6 C -0.014 4.014 7 C 0.600 3.400 8 O -0.528 6.528 9 N -0.717 5.717 10 C 0.122 3.878 11 C -0.115 4.115 12 C 0.085 3.915 13 H 0.080 0.920 14 C -0.182 4.182 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 N -0.262 5.262 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 -25.027 15.576 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.003 4.003 3 N -0.073 5.073 4 C -0.164 4.164 5 C -0.206 4.206 6 C -0.174 4.174 7 C 0.383 3.617 8 O -0.402 6.402 9 N -0.369 5.369 10 C -0.001 4.001 11 C -0.153 4.153 12 C -0.026 4.026 13 H 0.098 0.902 14 C -0.241 4.241 15 N -0.295 5.295 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 N -0.098 5.098 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.314 -25.290 15.490 32.112 hybrid contribution 0.137 0.766 -0.551 0.954 sum -12.176 -24.524 14.938 31.191 Atomic orbital electron populations 1.22078 0.93074 1.03406 1.03983 1.22005 0.96720 0.76812 1.04789 1.45610 1.32569 1.10346 1.18764 1.22873 0.99323 0.95557 0.98660 1.21820 1.04279 0.96147 0.98381 1.22040 1.02571 0.93168 0.99641 1.16878 0.79351 0.85397 0.80024 1.90836 1.45514 1.35649 1.68230 1.45892 1.47638 1.15238 1.28101 1.21432 1.02208 0.84700 0.91726 1.21744 0.98840 0.98269 0.96476 1.21506 0.88409 0.97072 0.95640 0.90169 1.22512 0.99828 1.02199 0.99606 1.60202 1.28893 1.05792 1.34586 1.21701 0.96384 0.89573 1.00559 1.19839 0.88935 0.83821 0.84681 1.90525 1.52590 1.45317 1.58209 1.41873 1.16843 1.06387 1.55112 1.19757 0.92902 0.93604 1.36416 0.87893 1.25251 0.99569 0.95202 0.98004 1.69619 1.35913 1.00345 1.48536 0.85807 0.81621 0.78592 0.78362 1.19238 1.20845 1.20758 1.73419 1.22466 0.98082 1.15821 0.90232 0.91839 0.90702 0.88833 0.87893 0.80167 0.81977 0.76360 0.91804 0.89091 0.91111 0.91506 0.92248 0.92365 0.92323 0.83047 0.93903 0.89573 0.77489 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.02 37.16 0.37 -0.21 16 2 C 0.12 0.42 7.12 -4.05 -0.03 0.39 16 3 N -0.28 -2.23 3.41 -61.33 -0.21 -2.44 16 4 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 5 C -0.18 -1.91 10.81 -39.37 -0.43 -2.34 16 6 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 7 C 0.60 8.95 7.82 -12.39 -0.10 8.85 16 8 O -0.53 -9.87 16.93 5.30 0.09 -9.78 16 9 N -0.72 -8.98 5.55 -61.30 -0.34 -9.32 16 10 C 0.12 1.62 5.56 -4.04 -0.02 1.60 16 11 C -0.11 -1.21 5.00 -26.73 -0.13 -1.35 16 12 C 0.08 1.01 2.59 -67.71 -0.18 0.83 16 13 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 14 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 15 N -0.66 -10.62 5.33 -107.99 -0.58 -11.19 16 16 C 0.05 0.90 5.97 -4.98 -0.03 0.88 16 17 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 18 O -0.58 -16.24 15.78 5.55 0.09 -16.16 16 19 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 24 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 N -0.26 -2.80 11.36 33.42 0.38 -2.42 16 29 H 0.08 0.12 8.14 -51.92 -0.42 -0.31 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.08 8.04 -51.93 -0.42 -0.33 16 34 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.40 4.12 8.20 -40.82 -0.33 3.78 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.63 7.45 -51.92 -0.39 0.25 16 43 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 44 H 0.35 5.82 8.17 -39.29 -0.32 5.50 16 45 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 46 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 47 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -36.54 408.73 -7.63 -44.17 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.55 Total: 15.09 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.31 Total: 8.46 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.08 Total: -64.54 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.18 Total: -25.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.54 -7.63 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690867110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.152 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds