Wall clock time and date at job start Tue Mar 31 2020 20:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47312 * 2 1 4 4 C 1.35035 * 124.88363 * 124.97313 * 3 2 1 5 5 C 1.35363 * 107.22828 * 179.72568 * 4 3 2 6 6 C 1.41495 * 105.50366 * 0.41886 * 5 4 3 7 7 C 1.47712 * 126.52219 * 179.84013 * 6 5 4 8 8 O 1.21573 * 119.99767 * 359.71271 * 7 6 5 9 9 N 1.34777 * 120.00297 * 179.71498 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27851 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47039 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.46949 * 184.99469 * 12 11 10 15 15 N 1.46905 * 109.46855 * 64.99825 * 12 11 10 16 16 C 1.46902 * 110.99867 * 204.99939 * 15 12 11 17 17 C 1.50699 * 109.46946 * 180.02562 * 16 15 12 18 18 O 1.21291 * 120.00278 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.37104 * 119.99949 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99491 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99733 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00618 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99576 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47258 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47139 * 120.00175 * 24 22 20 27 27 H 1.48501 * 109.47239 * 239.99820 * 24 22 20 28 28 N 1.28468 * 124.88685 * 304.97720 * 3 2 1 29 29 H 1.09007 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47423 * 299.99540 * 1 2 3 31 31 H 1.08995 * 109.47493 * 59.99513 * 1 2 3 32 32 H 1.08999 * 109.46779 * 240.00137 * 2 1 3 33 33 H 1.09006 * 109.47069 * 120.00234 * 2 1 3 34 34 H 1.08002 * 126.38735 * 0.02562 * 4 3 2 35 35 H 1.08002 * 127.24842 * 180.25530 * 5 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 38 38 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 39 39 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 40 40 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 41 41 H 1.09003 * 109.46585 * 60.00658 * 14 12 11 42 42 H 1.09008 * 109.46576 * 179.97438 * 14 12 11 43 43 H 1.08992 * 109.47820 * 300.00220 * 14 12 11 44 44 H 1.00896 * 110.99847 * 81.04941 * 15 12 11 45 45 H 1.09001 * 109.47009 * 300.00318 * 16 15 12 46 46 H 1.09003 * 109.47030 * 59.99969 * 16 15 12 47 47 H 0.97008 * 120.00392 * 0.02562 * 19 17 16 48 48 H 0.97003 * 120.00398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8744 1.8976 0.9077 5 6 3.0873 3.1904 0.5677 6 6 2.3006 3.4123 -0.5873 7 6 2.1862 4.6760 -1.3435 8 8 2.8030 5.6590 -0.9814 9 7 1.3979 4.7392 -2.4349 10 6 1.2893 5.9908 -3.1884 11 6 0.3445 5.7913 -4.3751 12 6 0.2304 7.0986 -5.1618 13 1 -0.0777 7.9005 -4.4910 14 6 -0.8082 6.9360 -6.2734 15 7 1.5337 7.4291 -5.7538 16 6 1.6532 8.8740 -5.9904 17 6 2.9995 9.1739 -6.5973 18 8 3.7823 8.2727 -6.8122 19 7 3.3338 10.4437 -6.9014 20 6 4.5589 10.7167 -7.4531 21 1 5.2558 9.9141 -7.6444 22 6 4.9036 12.0258 -7.7661 23 7 4.0558 13.0023 -7.5329 24 14 6.5725 12.3976 -8.5185 25 1 7.3354 11.1339 -8.6798 26 1 6.3858 13.0355 -9.8465 27 1 7.3228 13.3191 -7.6279 28 7 1.6937 2.2753 -0.8635 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3118 1.3751 1.7456 35 1 3.7218 3.9033 1.0734 36 1 0.9061 3.9547 -2.7240 37 1 0.8964 6.7730 -2.5388 38 1 2.2742 6.2821 -3.5532 39 1 0.7373 5.0090 -5.0248 40 1 -0.6406 5.5000 -4.0105 41 1 -1.7752 6.6908 -5.8341 42 1 -0.8897 7.8676 -6.8335 43 1 -0.5001 6.1341 -6.9442 44 1 1.6862 6.9095 -6.6051 45 1 0.8671 9.1966 -6.6732 46 1 1.5539 9.4065 -5.0445 47 1 2.7079 11.1645 -6.7293 48 1 4.2964 13.9162 -7.7518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690867110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:01 Heat of formation + Delta-G solvation = -30.268339 kcal Electronic energy + Delta-G solvation = -27929.710045 eV Core-core repulsion = 23826.925050 eV Total energy + Delta-G solvation = -4102.784995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.61113 -40.51931 -40.17623 -38.30517 -36.09088 -35.74629 -35.45328 -33.32589 -32.68109 -31.69514 -31.02380 -29.63692 -27.95307 -26.17284 -25.63983 -24.07211 -22.85935 -22.35872 -21.81496 -21.14148 -20.72515 -19.91535 -18.89043 -17.79347 -17.54723 -17.14463 -16.89258 -16.74665 -16.60392 -16.33788 -15.93668 -15.58801 -15.31945 -15.27280 -15.06329 -14.59148 -14.48460 -14.22275 -14.05659 -13.99947 -13.54882 -13.50182 -13.28223 -13.09593 -12.95471 -12.85104 -12.66507 -12.41867 -12.33107 -12.25056 -12.18612 -12.10422 -11.84831 -11.73779 -11.51620 -11.27479 -10.34630 -10.33308 -10.12455 -10.01517 -9.93326 -9.23256 -8.47081 -5.95793 0.52738 1.20611 1.35850 1.40576 1.55254 1.56131 2.05573 2.20946 2.29022 2.37166 2.95696 3.20145 3.33271 3.56002 3.86838 3.90462 3.97958 4.07530 4.12384 4.22733 4.28077 4.35625 4.39126 4.46651 4.49949 4.56083 4.62837 4.73133 4.73959 4.78651 4.83416 4.90053 4.91366 5.03131 5.19186 5.22563 5.24882 5.32169 5.35766 5.40667 5.45682 5.91434 5.92543 6.15657 6.44990 6.48385 6.60223 6.91888 7.12548 7.18436 7.56301 8.12053 8.70626 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.001828 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.524847 B =15309.776780 C =16452.018930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.276 5.276 4 C 0.002 3.998 5 C -0.210 4.210 6 C -0.049 4.049 7 C 0.593 3.407 8 O -0.580 6.580 9 N -0.704 5.704 10 C 0.127 3.873 11 C -0.102 4.102 12 C 0.084 3.916 13 H 0.085 0.915 14 C -0.175 4.175 15 N -0.679 5.679 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.275 1.275 26 H -0.268 1.268 27 H -0.271 1.271 28 N -0.268 5.268 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.228 0.772 35 H 0.157 0.843 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.345 0.655 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -27.164 16.327 34.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.065 5.065 4 C -0.140 4.140 5 C -0.238 4.238 6 C -0.207 4.207 7 C 0.379 3.621 8 O -0.458 6.458 9 N -0.355 5.355 10 C 0.004 3.996 11 C -0.140 4.140 12 C -0.026 4.026 13 H 0.103 0.897 14 C -0.234 4.234 15 N -0.312 5.312 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.196 1.196 28 N -0.106 5.106 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.245 0.755 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.164 0.836 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.848 -27.448 16.228 34.764 hybrid contribution 0.543 1.277 -0.718 1.563 sum -13.306 -26.170 15.510 33.204 Atomic orbital electron populations 1.22062 0.93020 1.04593 1.02577 1.22502 0.96812 0.74629 1.07233 1.46146 1.31535 1.11195 1.17657 1.23467 0.97574 0.94286 0.98719 1.22012 1.05199 0.98018 0.98615 1.21818 1.04917 0.93064 1.00912 1.17331 0.78703 0.85827 0.80265 1.90788 1.47659 1.37646 1.69724 1.45797 1.46992 1.15473 1.27271 1.21294 1.00712 0.84970 0.92652 1.21690 0.99668 0.97731 0.94959 1.21625 0.86942 0.97760 0.96225 0.89680 1.22424 1.00179 1.02006 0.98766 1.60197 1.32103 1.04409 1.34449 1.21533 0.92791 0.91232 1.01007 1.20966 0.90753 0.82643 0.83198 1.90490 1.54608 1.46356 1.59592 1.41945 1.16380 1.07280 1.55560 1.19702 0.94068 0.93746 1.38858 0.90489 1.26045 1.03053 0.94493 0.97745 1.69675 1.37269 1.00768 1.48397 0.84867 0.77173 0.78099 0.78150 1.19944 1.19314 1.19648 1.73353 1.22493 0.97944 1.16773 0.87755 0.92579 0.92738 0.87850 0.84041 0.75540 0.82552 0.74861 0.92436 0.93194 0.90851 0.88195 0.89801 0.93002 0.92150 0.83637 0.91344 0.88316 0.76981 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.02 71.98 0.72 -0.01 16 2 C 0.11 0.41 7.12 86.38 0.61 1.02 16 3 N -0.28 -3.72 3.41 -347.96 -1.19 -4.91 16 4 C 0.00 0.03 11.40 83.54 0.95 0.98 16 5 C -0.21 -4.55 10.81 22.41 0.24 -4.31 16 6 C -0.05 -1.28 7.13 42.46 0.30 -0.97 16 7 C 0.59 18.85 7.82 86.75 0.68 19.53 16 8 O -0.58 -23.47 16.93 -3.95 -0.07 -23.54 16 9 N -0.70 -18.27 5.55 -466.11 -2.59 -20.86 16 10 C 0.13 3.48 5.56 86.38 0.48 3.96 16 11 C -0.10 -2.03 5.00 30.59 0.15 -1.87 16 12 C 0.08 1.89 2.59 44.92 0.12 2.01 16 13 H 0.09 1.85 7.80 -2.39 -0.02 1.83 16 14 C -0.17 -3.12 9.16 71.98 0.66 -2.46 16 15 N -0.68 -21.84 5.33 -495.56 -2.64 -24.48 16 16 C 0.07 2.39 5.97 85.56 0.51 2.90 16 17 C 0.44 21.82 7.82 87.66 0.69 22.50 16 18 O -0.62 -36.29 15.78 -3.06 -0.05 -36.34 16 19 N -0.57 -30.80 5.29 -306.99 -1.62 -32.42 16 20 C -0.33 -19.77 9.68 84.04 0.81 -18.96 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -51.12 13.05 21.66 0.28 -50.84 16 24 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 N -0.27 -5.56 11.36 -48.18 -0.55 -6.11 16 29 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 32 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.14 -0.49 8.04 -2.38 -0.02 -0.51 16 34 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.41 8.46 8.20 -92.71 -0.76 7.70 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.05 1.80 7.75 -2.39 -0.02 1.78 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.01 7.45 -2.38 -0.02 0.99 16 43 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.34 11.59 8.17 -89.70 -0.73 10.86 16 45 H 0.07 2.12 7.44 -2.39 -0.02 2.10 16 46 H 0.10 3.30 8.06 -2.39 -0.02 3.28 16 47 H 0.40 20.13 7.90 -92.70 -0.73 19.39 16 48 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -84.82 408.73 -0.22 -85.04 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -1.23 Total: 43.88 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.40 Total: 24.02 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -8.30 Total: -139.61 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -0.12 Total: -59.88 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.82 -0.22 -85.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690867110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.768 kcal (2) G-P(sol) polarization free energy of solvation -84.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds