Wall clock time and date at job start Tue Mar 31 2020 19:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.53003 * 109.46965 * 240.00110 * 2 1 3 5 5 C 1.53001 * 109.46994 * 175.00206 * 4 2 1 6 6 N 1.46494 * 109.47326 * 179.97438 * 5 4 2 7 7 C 1.34781 * 120.00111 * 179.97438 * 6 5 4 8 8 O 1.21591 * 119.99992 * 359.97438 * 7 6 5 9 9 C 1.47524 * 119.99733 * 180.02562 * 7 6 5 10 10 C 1.36592 * 125.77018 * 180.30856 * 9 7 6 11 11 N 1.34810 * 106.84377 * 180.17781 * 10 9 7 12 12 C 1.46502 * 126.59661 * 179.84770 * 11 10 9 13 13 C 1.53005 * 109.46915 * 124.71067 * 12 11 10 14 14 H 1.08997 * 110.81024 * 302.82768 * 13 12 11 15 15 C 1.54806 * 110.93853 * 179.17271 * 13 12 11 16 16 C 1.54099 * 104.19470 * 220.91054 * 15 13 12 17 17 O 1.43889 * 107.37252 * 358.10337 * 16 15 13 18 18 C 1.44388 * 106.89814 * 26.27302 * 17 16 15 19 19 N 1.40208 * 106.80588 * 359.58525 * 11 10 9 20 20 N 1.28758 * 108.36903 * 0.26570 * 19 11 10 21 21 N 1.46500 * 109.46935 * 120.00176 * 2 1 3 22 22 C 1.36930 * 119.99734 * 274.99781 * 21 2 1 23 23 H 1.08003 * 120.00113 * 0.02562 * 22 21 2 24 24 C 1.38815 * 120.00127 * 179.97438 * 22 21 2 25 25 N 1.31622 * 119.99760 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00369 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46949 * 60.00222 * 26 24 22 28 28 H 1.48496 * 109.47072 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46943 * 300.00271 * 26 24 22 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47103 * 300.00317 * 1 2 3 32 32 H 1.09003 * 109.46840 * 60.00022 * 1 2 3 33 33 H 1.09001 * 109.47395 * 55.00442 * 4 2 1 34 34 H 1.08998 * 109.46933 * 294.99761 * 4 2 1 35 35 H 1.09002 * 109.47474 * 59.99471 * 5 4 2 36 36 H 1.09006 * 109.46941 * 299.99928 * 5 4 2 37 37 H 0.97003 * 119.99756 * 0.02562 * 6 5 4 38 38 H 1.08005 * 126.58183 * 0.03316 * 10 9 7 39 39 H 1.08995 * 109.46934 * 4.71620 * 12 11 10 40 40 H 1.08997 * 109.47047 * 244.70844 * 12 11 10 41 41 H 1.09002 * 110.48575 * 339.59172 * 15 13 12 42 42 H 1.09004 * 110.48517 * 102.10161 * 15 13 12 43 43 H 1.09001 * 109.87936 * 117.39322 * 16 15 13 44 44 H 1.08993 * 109.88056 * 238.39954 * 16 15 13 45 45 H 1.09002 * 110.61854 * 201.57804 * 18 17 16 46 46 H 1.09000 * 110.62045 * 78.73713 * 18 17 16 47 47 H 0.96998 * 120.00057 * 95.00481 * 21 2 1 48 48 H 0.96993 * 120.00084 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5095 7 6 5.3741 -1.3398 -2.7751 8 8 6.1604 -0.7978 -2.0225 9 6 5.8658 -2.0353 -3.9797 10 6 7.1733 -2.1488 -4.3583 11 7 7.1872 -2.8503 -5.5094 12 6 8.3686 -3.2190 -6.2934 13 6 8.3924 -4.7351 -6.4975 14 1 8.3801 -5.2551 -5.5397 15 6 9.6186 -5.1606 -7.3413 16 6 9.0671 -6.2417 -8.2909 17 8 7.6778 -6.4297 -7.9672 18 6 7.2101 -5.1916 -7.3899 19 7 5.8539 -3.1644 -5.8088 20 7 5.1036 -2.6690 -4.8872 21 7 2.0183 -0.6907 1.1962 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0403 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.9242 -1.9391 3.4502 26 14 2.7890 0.2697 5.1185 27 1 1.4664 0.8064 5.5284 28 1 3.2980 -0.6487 6.1686 29 1 3.7443 1.3921 4.9377 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2056 35 1 3.9995 -1.0728 -0.4260 36 1 3.8532 0.4370 -1.3573 37 1 3.4259 -1.7358 -3.1105 38 1 8.0313 -1.7507 -3.8368 39 1 9.2684 -2.9099 -5.7616 40 1 8.3307 -2.7224 -7.2629 41 1 10.0029 -4.3136 -7.9097 42 1 10.3976 -5.5739 -6.7007 43 1 9.1624 -5.9105 -9.3249 44 1 9.6138 -7.1739 -8.1485 45 1 6.3178 -5.3620 -6.7874 46 1 7.0109 -4.4559 -8.1691 47 1 2.2491 -1.6318 1.1526 48 1 3.2468 -2.3965 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690871987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:14 Heat of formation + Delta-G solvation = -8.412044 kcal Electronic energy + Delta-G solvation = -28191.266792 eV Core-core repulsion = 24089.429557 eV Total energy + Delta-G solvation = -4101.837235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28164 -40.57815 -40.29454 -38.11044 -36.35801 -35.81627 -34.12443 -33.35084 -32.14754 -30.99941 -30.36590 -29.45774 -27.59054 -25.93789 -25.11704 -23.91466 -23.45819 -22.87676 -21.98541 -21.60835 -21.01476 -19.40358 -19.05281 -17.73054 -17.30447 -17.11521 -16.99475 -16.80574 -16.57478 -16.25142 -15.98498 -15.64000 -15.49554 -15.31113 -15.19587 -14.88965 -14.45850 -14.15270 -14.07241 -13.69844 -13.55237 -13.24919 -13.22102 -12.77037 -12.75652 -12.61202 -12.52371 -12.37423 -12.30514 -12.21974 -12.10520 -11.95317 -11.73976 -11.66338 -11.57337 -11.32169 -11.19766 -10.90063 -10.69326 -10.43858 -10.03213 -8.95006 -7.89212 -5.16172 0.11796 0.59985 1.04182 1.47896 1.51091 1.56552 2.12673 2.23437 2.59803 2.87898 3.16516 3.32715 3.44425 3.47164 3.61345 3.79761 3.92972 3.93966 3.96973 4.01873 4.10189 4.20949 4.25068 4.32842 4.39394 4.41645 4.48779 4.67363 4.69988 4.78636 4.80868 4.84598 4.87830 4.91941 4.99096 5.04354 5.12590 5.14236 5.23770 5.41433 5.42000 5.42657 5.56897 5.63633 5.88235 6.33240 6.43172 6.89085 7.14710 7.39109 8.17129 8.38891 9.34161 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019453 B = 0.001809 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.049364 B =15471.658428 C =16023.818987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.704 5.704 7 C 0.597 3.403 8 O -0.575 6.575 9 C -0.123 4.123 10 C 0.114 3.886 11 N -0.349 5.349 12 C 0.124 3.876 13 C -0.133 4.133 14 H 0.082 0.918 15 C -0.135 4.135 16 C 0.034 3.966 17 O -0.411 6.411 18 C 0.053 3.947 19 N -0.080 5.080 20 N -0.222 5.222 21 N -0.734 5.734 22 C -0.233 4.233 23 H 0.075 0.925 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.968 3.032 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.280 1.280 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.415 0.585 38 H 0.236 0.764 39 H 0.151 0.849 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -3.449 -28.973 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.354 5.354 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.262 4.262 10 C -0.044 4.044 11 N -0.134 5.134 12 C 0.005 3.995 13 C -0.153 4.153 14 H 0.101 0.899 15 C -0.173 4.173 16 C -0.042 4.042 17 O -0.331 6.331 18 C -0.023 4.023 19 N -0.060 5.060 20 N -0.096 5.096 21 N -0.375 5.375 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.207 1.207 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.252 0.748 39 H 0.169 0.831 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.773 -3.804 -29.385 33.109 hybrid contribution 0.488 0.183 1.768 1.843 sum 15.260 -3.622 -27.618 31.761 Atomic orbital electron populations 1.22265 0.97229 1.00963 1.00873 1.20447 0.93088 0.95304 0.85497 0.93528 1.21928 0.92663 1.01993 0.99044 1.21191 0.95312 0.96414 0.86020 1.45777 1.07062 1.55780 1.26792 1.17120 0.82662 0.78867 0.83168 1.90812 1.56398 1.48110 1.50088 1.21339 0.92166 1.12080 1.00652 1.23827 0.99925 0.93239 0.87431 1.50750 1.09106 1.36224 1.17314 1.22560 0.83557 0.95145 0.98218 1.22996 0.96847 0.94745 1.00710 0.89921 1.22927 0.96612 0.99942 0.97843 1.23429 0.81308 1.00316 0.99184 1.88925 1.26256 1.35447 1.82448 1.23660 0.97077 0.86078 0.95524 1.81861 0.84390 1.21218 1.18530 1.74609 1.27663 1.06917 1.00414 1.42647 1.78357 1.10223 1.06288 1.19583 1.34360 0.94131 0.88408 0.90684 1.25514 1.03408 0.96889 1.01394 1.69811 1.52963 1.10172 1.29227 0.85278 0.77893 0.77289 0.79736 1.20387 1.22506 1.20674 0.93816 0.94709 0.90676 0.87910 0.91335 0.93918 0.92156 0.74801 0.74771 0.83100 0.85733 0.87274 0.88390 0.91116 0.89232 0.90432 0.91059 0.79695 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.49 71.98 0.68 -4.50 16 2 C 0.17 6.28 2.89 44.99 0.13 6.41 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 C -0.12 -3.59 4.87 30.60 0.15 -3.44 16 5 C 0.13 4.63 5.56 86.38 0.48 5.11 16 6 N -0.70 -20.97 5.55 -466.28 -2.59 -23.56 16 7 C 0.60 18.81 7.82 86.69 0.68 19.49 16 8 O -0.58 -22.04 16.86 -4.00 -0.07 -22.10 16 9 C -0.12 -3.05 6.99 40.82 0.29 -2.77 16 10 C 0.11 1.87 11.27 83.85 0.95 2.82 16 11 N -0.35 -4.76 3.69 -347.10 -1.28 -6.05 16 12 C 0.12 0.48 5.93 86.38 0.51 0.99 16 13 C -0.13 -1.00 3.37 -9.49 -0.03 -1.03 16 14 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 15 C -0.14 -0.38 6.60 31.58 0.21 -0.17 16 16 C 0.03 0.29 7.70 72.35 0.56 0.84 16 17 O -0.41 -7.19 11.54 -148.98 -1.72 -8.91 16 18 C 0.05 0.75 6.09 72.67 0.44 1.19 16 19 N -0.08 -1.68 11.79 37.02 0.44 -1.25 16 20 N -0.22 -5.60 12.04 -50.00 -0.60 -6.21 16 21 N -0.73 -36.86 4.57 -322.93 -1.48 -38.34 16 22 C -0.23 -13.05 9.93 84.04 0.83 -12.22 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 26 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.87 7.75 -2.39 -0.02 1.85 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 37 H 0.42 10.47 8.16 -92.71 -0.76 9.71 16 38 H 0.24 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.15 -0.48 8.08 -2.39 -0.02 -0.50 16 40 H 0.12 0.05 8.10 -2.39 -0.02 0.03 16 41 H 0.11 -0.24 7.86 -2.39 -0.02 -0.26 16 42 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 1.47 7.30 -2.39 -0.02 1.46 16 46 H 0.07 0.88 8.02 -2.39 -0.02 0.86 16 47 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 48 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.59 400.75 0.85 -79.74 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.50 Total: 29.34 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.34 Total: 8.49 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.23 Total: -136.04 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.79 Total: -31.01 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -80.59 0.85 -79.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.330 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds