Wall clock time and date at job start Tue Mar 31 2020 19:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47301 * 120.00121 * 2 1 3 5 5 C 1.53000 * 109.47639 * 184.99733 * 4 2 1 6 6 N 1.46492 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00113 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.36589 * 125.77161 * 179.97438 * 9 7 6 11 11 N 1.34817 * 106.83946 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59595 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47116 * 125.00163 * 12 11 10 14 14 H 1.08999 * 110.45598 * 52.40263 * 13 12 11 15 15 C 1.54513 * 110.50910 * 174.99983 * 13 12 11 16 16 C 1.54476 * 104.06005 * 118.64663 * 15 13 12 17 17 O 1.44426 * 104.80510 * 23.98011 * 16 15 13 18 18 C 1.44423 * 105.27374 * 319.48735 * 17 16 15 19 19 N 1.40212 * 106.81108 * 0.02562 * 11 10 9 20 20 N 1.28764 * 108.36638 * 359.97438 * 19 11 10 21 21 N 1.46503 * 109.47017 * 239.99923 * 2 1 3 22 22 C 1.36941 * 119.99808 * 85.00456 * 21 2 1 23 23 H 1.08003 * 119.99946 * 359.97438 * 22 21 2 24 24 C 1.38808 * 119.99987 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99948 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46756 * 60.00650 * 26 24 22 28 28 H 1.48500 * 109.47117 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47521 * 300.00303 * 26 24 22 30 30 H 1.08997 * 109.47131 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46807 * 299.99950 * 1 2 3 33 33 H 1.08999 * 109.47099 * 64.99709 * 4 2 1 34 34 H 1.09002 * 109.47233 * 305.00442 * 4 2 1 35 35 H 1.08999 * 109.46895 * 59.99851 * 5 4 2 36 36 H 1.08996 * 109.46725 * 300.00489 * 5 4 2 37 37 H 0.97004 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.07995 * 126.58198 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.47393 * 245.00780 * 12 11 10 40 40 H 1.09005 * 109.46588 * 5.00277 * 12 11 10 41 41 H 1.09003 * 110.51253 * 237.29183 * 15 13 12 42 42 H 1.09004 * 110.51260 * 0.02562 * 15 13 12 43 43 H 1.09001 * 110.36857 * 142.80848 * 16 15 13 44 44 H 1.09003 * 110.37146 * 265.14561 * 16 15 13 45 45 H 1.09004 * 110.36994 * 281.68277 * 18 17 16 46 46 H 1.08993 * 110.37355 * 159.34734 * 18 17 16 47 47 H 0.96993 * 120.00268 * 264.99530 * 21 2 1 48 48 H 0.97004 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3740 -1.3388 2.7759 8 8 6.1603 -0.7974 2.0227 9 6 5.8656 -2.0332 3.9810 10 6 7.1726 -2.1418 4.3626 11 7 7.1869 -2.8481 5.5108 12 6 8.3682 -3.2164 6.2951 13 6 8.1973 -2.7276 7.7348 14 1 7.2474 -3.0719 8.1437 15 6 9.3723 -3.2114 8.6138 16 6 10.0365 -1.9058 9.1042 17 8 8.9930 -0.9101 9.0293 18 6 8.2907 -1.1870 7.7981 19 7 5.8536 -3.1624 5.8101 20 7 5.1032 -2.6668 4.8885 21 7 2.0183 -0.6906 -1.1962 22 6 2.1492 -0.0075 -2.3758 23 1 1.8920 1.0404 -2.4243 24 6 2.6123 -0.6617 -3.5090 25 7 2.9262 -1.9385 -3.4497 26 14 2.7901 0.2701 -5.1182 27 1 3.7447 1.3931 -4.9370 28 1 3.3003 -0.6479 -6.1680 29 1 1.4675 0.8060 -5.5288 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 3.8533 0.4368 1.3573 36 1 3.9994 -1.0729 0.4259 37 1 3.4258 -1.7350 3.1111 38 1 8.0302 -1.7398 3.8436 39 1 8.4839 -4.3002 6.2906 40 1 9.2533 -2.7547 5.8573 41 1 9.0031 -3.7928 9.4587 42 1 10.0751 -3.7985 8.0226 43 1 10.3807 -2.0181 10.1323 44 1 10.8672 -1.6347 8.4525 45 1 8.8537 -0.8056 6.9461 46 1 7.2938 -0.7470 7.8227 47 1 2.2491 -1.6317 -1.1527 48 1 3.2496 -2.3958 -4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690871988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:17 Heat of formation + Delta-G solvation = 18.229116 kcal Electronic energy + Delta-G solvation = -28204.146826 eV Core-core repulsion = 24103.464839 eV Total energy + Delta-G solvation = -4100.681988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47925 -40.09845 -39.17941 -36.52270 -35.75595 -34.32677 -32.81351 -32.20638 -31.18503 -30.04674 -29.15618 -28.05423 -27.00133 -24.34256 -23.73950 -23.48904 -22.51354 -22.09450 -21.25780 -20.38370 -19.65560 -18.36968 -17.25770 -17.06846 -16.71519 -16.20151 -16.09673 -15.84575 -15.72512 -15.25029 -14.84274 -14.74845 -14.39255 -13.96263 -13.85711 -13.61553 -13.42271 -13.30750 -12.90086 -12.53503 -12.43983 -12.37679 -12.08146 -11.98222 -11.84818 -11.57904 -11.48756 -11.29482 -11.02389 -10.86061 -10.69110 -10.65586 -10.59790 -10.42161 -10.26569 -10.07861 -9.80426 -9.58241 -9.51670 -8.86752 -8.74123 -6.89713 -5.69849 -2.98334 0.86967 1.59493 1.64138 3.24242 3.28834 3.36503 3.49173 3.53484 3.54252 3.66394 3.79532 4.04860 4.07231 4.20744 4.36339 4.52604 4.59279 4.61703 4.65391 4.67121 4.78655 4.95642 5.06273 5.13596 5.16114 5.27704 5.35248 5.40504 5.47378 5.58535 5.62113 5.76560 5.94002 6.00862 6.13734 6.14777 6.23866 6.40779 6.45854 6.52882 6.72355 6.77005 6.92620 7.12491 7.55040 7.76377 7.81050 8.33306 8.48573 9.59768 10.17073 10.51789 11.52709 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.001792 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.939085 B =15619.511864 C =16139.413633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.597 3.403 8 O -0.536 6.536 9 C -0.093 4.093 10 C 0.091 3.909 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.138 4.138 14 H 0.105 0.895 15 C -0.147 4.147 16 C 0.042 3.958 17 O -0.371 6.371 18 C 0.049 3.951 19 N -0.065 5.065 20 N -0.203 5.203 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.205 0.795 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 -3.685 27.428 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.380 3.620 8 O -0.412 6.412 9 C -0.233 4.233 10 C -0.065 4.065 11 N -0.150 5.150 12 C 0.010 3.990 13 C -0.157 4.157 14 H 0.123 0.877 15 C -0.185 4.185 16 C -0.035 4.035 17 O -0.289 6.289 18 C -0.028 4.028 19 N -0.045 5.045 20 N -0.077 5.077 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.239 0.761 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.634 -3.702 27.866 31.242 hybrid contribution 0.677 0.097 -1.469 1.621 sum 14.311 -3.604 26.396 30.242 Atomic orbital electron populations 1.22420 0.99131 1.00856 0.99933 1.20157 0.91881 0.95572 0.86003 0.93253 1.22067 0.93773 1.01971 0.99371 1.21520 0.94589 0.97170 0.86738 1.45914 1.06704 1.56050 1.27413 1.16745 0.82984 0.79489 0.82744 1.90847 1.55578 1.46277 1.48472 1.21614 0.90623 1.10172 1.00854 1.23407 1.00358 0.94619 0.88109 1.50482 1.09138 1.37606 1.17747 1.22153 0.83585 1.02831 0.90459 1.22923 1.01923 0.97097 0.93798 0.87713 1.22963 0.96671 0.98823 1.00055 1.23472 0.90925 0.86625 1.02485 1.89189 1.46246 1.53033 1.40448 1.23507 0.98135 0.93336 0.87787 1.81961 0.82866 1.21039 1.18616 1.74649 1.26644 1.06492 0.99907 1.42451 1.78086 1.10663 1.05335 1.19184 1.36434 0.93825 0.87378 0.91260 1.24723 1.02256 0.95968 0.98020 1.69649 1.50930 1.08656 1.28892 0.86291 0.77694 0.78634 0.83711 1.21293 1.21812 1.21393 0.92767 0.93507 0.94547 0.91475 0.91789 0.91558 0.89463 0.76118 0.77836 0.87754 0.87380 0.89604 0.89751 0.88677 0.91921 0.91959 0.88817 0.78269 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.38 2.89 -67.93 -0.20 3.19 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.11 4.87 -26.73 -0.13 -2.24 16 5 C 0.12 2.08 5.56 -4.05 -0.02 2.06 16 6 N -0.71 -10.56 5.55 -61.36 -0.34 -10.90 16 7 C 0.60 9.35 7.82 -12.48 -0.10 9.25 16 8 O -0.54 -10.08 16.86 5.28 0.09 -9.99 16 9 C -0.09 -1.19 6.99 -83.55 -0.58 -1.77 16 10 C 0.09 0.85 11.27 -16.84 -0.19 0.66 16 11 N -0.36 -2.92 3.58 -61.06 -0.22 -3.13 16 12 C 0.13 0.50 5.69 -4.04 -0.02 0.48 16 13 C -0.14 -0.62 3.24 -89.05 -0.29 -0.91 16 14 H 0.10 0.63 8.06 -51.93 -0.42 0.21 16 15 C -0.15 -0.40 6.74 -25.16 -0.17 -0.57 16 16 C 0.04 0.17 7.63 37.93 0.29 0.46 16 17 O -0.37 -2.91 11.65 -35.23 -0.41 -3.32 16 18 C 0.05 0.31 7.08 37.93 0.27 0.58 16 19 N -0.06 -0.73 13.58 60.35 0.82 0.09 16 20 N -0.20 -2.62 12.04 32.85 0.40 -2.22 16 21 N -0.72 -17.86 4.57 -53.42 -0.24 -18.10 16 22 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 26 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.82 7.75 -51.93 -0.40 1.41 16 37 H 0.40 5.19 8.16 -40.82 -0.33 4.86 16 38 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.11 0.15 7.90 -51.93 -0.41 -0.26 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.07 7.73 -51.93 -0.40 -0.33 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.06 0.33 7.74 -51.93 -0.40 -0.07 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -35.28 403.45 -6.89 -42.18 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.73 Total: 7.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.04 Total: 1.41 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 1.14 Total: -61.97 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.32 Total: -13.31 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.28 -6.89 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.405 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds