Wall clock time and date at job start Tue Mar 31 2020 19:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47301 * 120.00121 * 2 1 3 5 5 C 1.53000 * 109.47639 * 184.99733 * 4 2 1 6 6 N 1.46492 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00113 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.36589 * 125.77161 * 179.97438 * 9 7 6 11 11 N 1.34817 * 106.83946 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59595 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47116 * 125.00163 * 12 11 10 14 14 H 1.08999 * 110.45598 * 52.40263 * 13 12 11 15 15 C 1.54513 * 110.50910 * 174.99983 * 13 12 11 16 16 C 1.54476 * 104.06005 * 118.64663 * 15 13 12 17 17 O 1.44426 * 104.80510 * 23.98011 * 16 15 13 18 18 C 1.44423 * 105.27374 * 319.48735 * 17 16 15 19 19 N 1.40212 * 106.81108 * 0.02562 * 11 10 9 20 20 N 1.28764 * 108.36638 * 359.97438 * 19 11 10 21 21 N 1.46503 * 109.47017 * 239.99923 * 2 1 3 22 22 C 1.36941 * 119.99808 * 85.00456 * 21 2 1 23 23 H 1.08003 * 119.99946 * 359.97438 * 22 21 2 24 24 C 1.38808 * 119.99987 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99948 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46756 * 60.00650 * 26 24 22 28 28 H 1.48500 * 109.47117 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47521 * 300.00303 * 26 24 22 30 30 H 1.08997 * 109.47131 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46807 * 299.99950 * 1 2 3 33 33 H 1.08999 * 109.47099 * 64.99709 * 4 2 1 34 34 H 1.09002 * 109.47233 * 305.00442 * 4 2 1 35 35 H 1.08999 * 109.46895 * 59.99851 * 5 4 2 36 36 H 1.08996 * 109.46725 * 300.00489 * 5 4 2 37 37 H 0.97004 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.07995 * 126.58198 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.47393 * 245.00780 * 12 11 10 40 40 H 1.09005 * 109.46588 * 5.00277 * 12 11 10 41 41 H 1.09003 * 110.51253 * 237.29183 * 15 13 12 42 42 H 1.09004 * 110.51260 * 0.02562 * 15 13 12 43 43 H 1.09001 * 110.36857 * 142.80848 * 16 15 13 44 44 H 1.09003 * 110.37146 * 265.14561 * 16 15 13 45 45 H 1.09004 * 110.36994 * 281.68277 * 18 17 16 46 46 H 1.08993 * 110.37355 * 159.34734 * 18 17 16 47 47 H 0.96993 * 120.00268 * 264.99530 * 21 2 1 48 48 H 0.97004 * 119.99889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3740 -1.3388 2.7759 8 8 6.1603 -0.7974 2.0227 9 6 5.8656 -2.0332 3.9810 10 6 7.1726 -2.1418 4.3626 11 7 7.1869 -2.8481 5.5108 12 6 8.3682 -3.2164 6.2951 13 6 8.1973 -2.7276 7.7348 14 1 7.2474 -3.0719 8.1437 15 6 9.3723 -3.2114 8.6138 16 6 10.0365 -1.9058 9.1042 17 8 8.9930 -0.9101 9.0293 18 6 8.2907 -1.1870 7.7981 19 7 5.8536 -3.1624 5.8101 20 7 5.1032 -2.6668 4.8885 21 7 2.0183 -0.6906 -1.1962 22 6 2.1492 -0.0075 -2.3758 23 1 1.8920 1.0404 -2.4243 24 6 2.6123 -0.6617 -3.5090 25 7 2.9262 -1.9385 -3.4497 26 14 2.7901 0.2701 -5.1182 27 1 3.7447 1.3931 -4.9370 28 1 3.3003 -0.6479 -6.1680 29 1 1.4675 0.8060 -5.5288 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -1.7715 1.2055 34 1 1.6054 -0.2618 2.1370 35 1 3.8533 0.4368 1.3573 36 1 3.9994 -1.0729 0.4259 37 1 3.4258 -1.7350 3.1111 38 1 8.0302 -1.7398 3.8436 39 1 8.4839 -4.3002 6.2906 40 1 9.2533 -2.7547 5.8573 41 1 9.0031 -3.7928 9.4587 42 1 10.0751 -3.7985 8.0226 43 1 10.3807 -2.0181 10.1323 44 1 10.8672 -1.6347 8.4525 45 1 8.8537 -0.8056 6.9461 46 1 7.2938 -0.7470 7.8227 47 1 2.2491 -1.6317 -1.1527 48 1 3.2496 -2.3958 -4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690871988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:16 Heat of formation + Delta-G solvation = -8.922874 kcal Electronic energy + Delta-G solvation = -28205.324225 eV Core-core repulsion = 24103.464839 eV Total energy + Delta-G solvation = -4101.859386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28666 -40.61043 -40.33113 -38.11087 -36.35204 -35.81717 -34.12519 -33.34244 -32.13314 -30.96891 -30.36506 -29.49378 -27.55379 -25.92467 -25.09596 -24.17814 -23.39145 -23.02840 -21.98403 -21.51290 -20.88933 -19.38797 -19.05181 -17.74861 -17.36304 -17.12459 -16.91837 -16.83656 -16.50199 -16.35628 -16.12353 -15.62781 -15.57116 -15.30253 -15.14930 -14.90542 -14.39923 -14.10633 -14.01212 -13.76291 -13.55162 -13.22317 -13.13361 -12.96796 -12.76800 -12.61103 -12.43246 -12.39199 -12.30213 -12.22388 -12.16487 -12.09768 -11.66502 -11.60726 -11.57322 -11.29471 -11.20035 -10.90048 -10.83766 -10.44604 -10.03522 -8.94865 -7.89163 -5.16090 0.11508 0.59707 1.03715 1.48041 1.51181 1.56590 2.12412 2.22873 2.59858 2.90380 3.14460 3.25031 3.44515 3.47544 3.73199 3.73984 3.90681 3.93794 3.95067 4.01789 4.07733 4.18857 4.24646 4.29880 4.38427 4.39659 4.50179 4.66439 4.67624 4.69947 4.78730 4.81350 4.88337 4.91851 5.01143 5.04352 5.11591 5.12592 5.23705 5.41171 5.41631 5.42548 5.56962 5.63623 5.77552 6.33332 6.42883 6.88588 7.14456 7.39280 8.17175 8.39042 9.34164 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.001792 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.939085 B =15619.511864 C =16139.413633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.703 5.703 7 C 0.596 3.404 8 O -0.575 6.575 9 C -0.122 4.122 10 C 0.111 3.889 11 N -0.347 5.347 12 C 0.122 3.878 13 C -0.131 4.131 14 H 0.086 0.914 15 C -0.137 4.137 16 C 0.033 3.967 17 O -0.404 6.404 18 C 0.045 3.955 19 N -0.080 5.080 20 N -0.222 5.222 21 N -0.734 5.734 22 C -0.233 4.233 23 H 0.075 0.925 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.968 3.032 27 H -0.281 1.281 28 H -0.298 1.298 29 H -0.278 1.278 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.415 0.585 38 H 0.235 0.765 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.076 -3.710 29.008 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.354 5.354 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.261 4.261 10 C -0.047 4.047 11 N -0.132 5.132 12 C 0.003 3.997 13 C -0.151 4.151 14 H 0.104 0.896 15 C -0.175 4.175 16 C -0.043 4.043 17 O -0.324 6.324 18 C -0.031 4.031 19 N -0.060 5.060 20 N -0.096 5.096 21 N -0.375 5.375 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.798 3.202 27 H -0.207 1.207 28 H -0.225 1.225 29 H -0.204 1.204 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.252 0.748 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.664 -3.718 29.529 33.179 hybrid contribution 0.413 0.134 -1.772 1.825 sum 15.077 -3.584 27.756 31.790 Atomic orbital electron populations 1.22263 0.97216 1.00982 1.00861 1.20445 0.93097 0.95288 0.85511 0.93584 1.21926 0.92644 1.02024 0.99024 1.21189 0.95329 0.96400 0.86021 1.45773 1.07053 1.55804 1.26759 1.17121 0.82675 0.78869 0.83178 1.90814 1.56400 1.48102 1.50076 1.21333 0.92130 1.12022 1.00623 1.23811 0.99922 0.93107 0.87878 1.50744 1.09160 1.35976 1.17291 1.22680 0.82880 1.04598 0.89570 1.22812 1.01933 0.95776 0.94568 0.89603 1.22946 0.96215 0.98335 1.00049 1.23713 0.90583 0.86510 1.03462 1.89153 1.47477 1.54572 1.41161 1.23538 0.97158 0.94607 0.87837 1.81878 0.84375 1.21351 1.18412 1.74616 1.27594 1.07089 1.00281 1.42645 1.78365 1.10225 1.06272 1.19580 1.34377 0.94130 0.88432 0.90725 1.25504 1.03374 0.96893 1.01368 1.69812 1.52906 1.10176 1.29228 0.85283 0.77882 0.77296 0.79764 1.20714 1.22469 1.20401 0.94720 0.93772 0.90697 0.91264 0.87954 0.92234 0.93856 0.74792 0.74902 0.85537 0.83840 0.89533 0.86895 0.88098 0.90498 0.90753 0.91082 0.79672 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.17 6.29 2.89 44.99 0.13 6.42 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 C -0.12 -3.59 4.87 30.59 0.15 -3.44 16 5 C 0.13 4.64 5.56 86.38 0.48 5.12 16 6 N -0.70 -20.98 5.55 -466.30 -2.59 -23.57 16 7 C 0.60 18.86 7.82 86.69 0.68 19.54 16 8 O -0.57 -22.10 16.86 -4.01 -0.07 -22.17 16 9 C -0.12 -3.03 6.99 40.81 0.29 -2.75 16 10 C 0.11 1.85 11.27 83.85 0.95 2.80 16 11 N -0.35 -4.79 3.58 -347.10 -1.24 -6.03 16 12 C 0.12 0.51 5.69 86.38 0.49 1.00 16 13 C -0.13 -0.91 3.24 -9.78 -0.03 -0.94 16 14 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 15 C -0.14 -0.36 6.74 31.61 0.21 -0.15 16 16 C 0.03 0.21 7.63 72.48 0.55 0.76 16 17 O -0.40 -6.06 11.65 -148.98 -1.74 -7.80 16 18 C 0.05 0.52 7.08 72.48 0.51 1.04 16 19 N -0.08 -1.71 13.58 37.02 0.50 -1.21 16 20 N -0.22 -5.62 12.04 -50.00 -0.60 -6.22 16 21 N -0.73 -36.81 4.57 -322.93 -1.48 -38.29 16 22 C -0.23 -13.07 9.93 84.03 0.83 -12.23 16 23 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 25 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 26 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.89 7.75 -2.39 -0.02 1.87 16 37 H 0.42 10.46 8.16 -92.70 -0.76 9.71 16 38 H 0.23 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.14 -0.32 7.90 -2.38 -0.02 -0.33 16 41 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.11 -0.32 7.73 -2.39 -0.02 -0.33 16 43 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.07 0.64 7.74 -2.39 -0.02 0.62 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16 48 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -80.06 403.45 0.99 -79.08 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.50 Total: 28.76 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.39 Total: 8.46 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -5.13 Total: -135.77 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.80 Total: -29.96 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -80.06 0.99 -79.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.154 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds