Wall clock time and date at job start Tue Mar 31 2020 19:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46764 * 2 1 4 4 C 1.52997 * 109.47361 * 119.99862 * 2 1 3 5 5 C 1.52998 * 109.47313 * 185.00481 * 4 2 1 6 6 N 1.46502 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00170 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99826 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.00270 * 179.97438 * 7 6 5 10 10 C 1.36597 * 125.77313 * 180.24177 * 9 7 6 11 11 N 1.34811 * 106.83905 * 180.16891 * 10 9 7 12 12 C 1.46508 * 126.59429 * 179.91034 * 11 10 9 13 13 C 1.53000 * 109.46907 * 124.71058 * 12 11 10 14 14 H 1.09002 * 110.43833 * 305.70160 * 13 12 11 15 15 C 1.54816 * 110.59806 * 183.07748 * 13 12 11 16 16 C 1.54989 * 102.09401 * 220.38844 * 15 13 12 17 17 O 1.44383 * 103.48976 * 37.02246 * 16 15 13 18 18 C 1.43739 * 106.97729 * 319.94114 * 17 16 15 19 19 N 1.40207 * 106.81112 * 359.64458 * 11 10 9 20 20 N 1.28761 * 108.37039 * 0.23001 * 19 11 10 21 21 N 1.46496 * 109.47358 * 240.00295 * 2 1 3 22 22 C 1.36938 * 120.00280 * 84.99930 * 21 2 1 23 23 H 1.08001 * 119.99870 * 359.97438 * 22 21 2 24 24 C 1.38810 * 119.99930 * 180.02562 * 22 21 2 25 25 N 1.31616 * 120.00171 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99950 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47055 * 89.99651 * 26 24 22 28 28 H 1.48496 * 109.47292 * 209.99872 * 26 24 22 29 29 H 1.48504 * 109.47140 * 329.99683 * 26 24 22 30 30 H 1.09001 * 109.47572 * 299.99495 * 1 2 3 31 31 H 1.09001 * 109.47523 * 60.00344 * 1 2 3 32 32 H 1.09006 * 109.47155 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47050 * 65.00273 * 4 2 1 34 34 H 1.08996 * 109.47262 * 305.00366 * 4 2 1 35 35 H 1.08995 * 109.47232 * 59.99903 * 5 4 2 36 36 H 1.09001 * 109.46834 * 299.99648 * 5 4 2 37 37 H 0.97003 * 120.00159 * 359.97438 * 6 5 4 38 38 H 1.07999 * 126.58109 * 0.06519 * 10 9 7 39 39 H 1.08994 * 109.46660 * 4.70964 * 12 11 10 40 40 H 1.08993 * 109.46847 * 244.70946 * 12 11 10 41 41 H 1.08999 * 110.90817 * 338.58839 * 15 13 12 42 42 H 1.09005 * 110.90433 * 102.19166 * 15 13 12 43 43 H 1.08999 * 110.62077 * 278.52724 * 16 15 13 44 44 H 1.08999 * 110.75439 * 155.59172 * 16 15 13 45 45 H 1.09005 * 109.87679 * 267.08788 * 18 17 16 46 46 H 1.08998 * 110.00208 * 146.00696 * 18 17 16 47 47 H 0.97007 * 119.99819 * 264.99704 * 21 2 1 48 48 H 0.97001 * 120.00186 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3042 2.5096 7 6 5.3740 -1.3396 2.7753 8 8 6.1604 -0.7982 2.0222 9 6 5.8658 -2.0350 3.9797 10 6 7.1725 -2.1394 4.3640 11 7 7.1873 -2.8511 5.5088 12 6 8.3687 -3.2197 6.2929 13 6 8.1976 -2.7319 7.7329 14 1 7.9800 -1.6640 7.7497 15 6 9.4652 -3.0400 8.5666 16 6 8.8614 -3.4968 9.9190 17 8 7.6850 -4.2378 9.5294 18 6 7.0792 -3.5214 8.4405 19 7 5.8541 -3.1655 5.8081 20 7 5.1036 -2.6694 4.8869 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0074 -2.3757 23 1 1.8918 1.0404 -2.4243 24 6 2.6114 -0.6619 -3.5092 25 7 2.9244 -1.9389 -3.4501 26 14 2.7892 0.2698 -5.1185 27 1 4.1513 0.8549 -5.2038 28 1 2.5784 -0.6616 -6.2557 29 1 1.7790 1.3569 -5.1753 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7714 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.8531 0.4371 1.3574 36 1 3.9994 -1.0727 0.4260 37 1 3.4259 -1.7358 3.1106 38 1 8.0295 -1.7315 3.8486 39 1 9.2536 -2.7576 5.8554 40 1 8.4845 -4.3034 6.2877 41 1 10.0461 -3.8410 8.1096 42 1 10.0734 -2.1445 8.6949 43 1 8.5879 -2.6351 10.5279 44 1 9.5592 -4.1390 10.4563 45 1 6.3251 -2.8336 8.8233 46 1 6.6212 -4.2220 7.7422 47 1 2.2491 -1.6317 -1.1526 48 1 3.2471 -2.3963 -4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690871989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:20 Heat of formation + Delta-G solvation = 19.778025 kcal Electronic energy + Delta-G solvation = -28171.964540 eV Core-core repulsion = 24071.349718 eV Total energy + Delta-G solvation = -4100.614822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.48540 -40.03080 -39.17844 -36.52679 -35.72584 -34.32870 -32.78626 -32.20972 -31.24123 -30.02737 -29.12030 -28.03186 -27.04991 -24.39595 -23.57024 -23.35950 -22.48601 -22.04389 -21.33256 -20.48439 -19.68873 -18.25522 -17.19256 -17.13021 -16.84069 -16.29024 -16.05256 -15.83212 -15.48497 -15.20240 -14.91390 -14.61337 -14.34138 -13.95801 -13.84588 -13.68392 -13.42936 -13.27072 -12.87417 -12.56683 -12.43460 -12.25660 -12.00795 -11.98520 -11.85159 -11.51790 -11.49538 -11.41972 -11.02839 -10.87360 -10.69767 -10.67585 -10.60051 -10.25994 -10.17771 -10.06301 -9.80188 -9.58866 -9.52152 -8.87467 -8.74599 -6.89906 -5.70246 -2.98711 0.86785 1.59069 1.64239 3.26057 3.35626 3.36130 3.48468 3.53389 3.54769 3.67656 3.73654 3.95701 4.10443 4.33859 4.46257 4.53010 4.56618 4.61552 4.65057 4.77117 4.87971 4.99748 5.11710 5.14335 5.23094 5.32622 5.36447 5.46990 5.47191 5.61260 5.61953 5.76312 5.93589 6.01017 6.14387 6.23474 6.32489 6.40456 6.45549 6.52603 6.72028 6.76632 6.92304 7.12141 7.54837 7.76547 7.80814 8.32965 8.48123 9.59430 10.16763 10.51420 11.52385 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.001757 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.626475 B =15928.555524 C =16636.517242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.598 3.402 8 O -0.536 6.536 9 C -0.094 4.094 10 C 0.094 3.906 11 N -0.365 5.365 12 C 0.130 3.870 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.147 4.147 16 C 0.045 3.955 17 O -0.377 6.377 18 C 0.052 3.948 19 N -0.067 5.067 20 N -0.202 5.202 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.205 0.795 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.663 -2.353 28.108 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.381 3.619 8 O -0.412 6.412 9 C -0.234 4.234 10 C -0.063 4.063 11 N -0.150 5.150 12 C 0.009 3.991 13 C -0.157 4.157 14 H 0.111 0.889 15 C -0.185 4.185 16 C -0.031 4.031 17 O -0.296 6.296 18 C -0.025 4.025 19 N -0.048 5.048 20 N -0.076 5.076 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.239 0.761 38 H 0.222 0.778 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.232 -2.738 28.480 31.523 hybrid contribution 0.738 0.625 -1.417 1.715 sum 13.970 -2.113 27.064 30.530 Atomic orbital electron populations 1.22420 0.99126 1.00861 0.99930 1.20152 0.91886 0.95563 0.86005 0.93263 1.22065 0.93768 1.01987 0.99367 1.21521 0.94591 0.97143 0.86758 1.45916 1.06703 1.56017 1.27447 1.16742 0.82981 0.79480 0.82738 1.90846 1.55581 1.46319 1.48453 1.21619 0.90655 1.10186 1.00892 1.23416 1.00351 0.94404 0.88106 1.50503 1.09139 1.37433 1.17965 1.22151 0.83614 1.02880 0.90437 1.22906 0.97196 1.02034 0.93565 0.88873 1.23167 0.96582 1.02881 0.95897 1.23556 0.87338 0.96477 0.95754 1.88924 1.40903 1.48353 1.51390 1.23338 0.94268 0.96136 0.88782 1.81902 0.82911 1.21304 1.18633 1.74645 1.26662 1.06420 0.99834 1.42460 1.78067 1.10669 1.05351 1.19228 1.36366 0.93834 0.87355 0.91206 1.24723 1.02284 0.95950 0.98019 1.69657 1.51005 1.08625 1.28805 0.86220 0.77768 0.78569 0.83814 1.21771 1.21908 1.20848 0.94558 0.92759 0.93502 0.91459 0.91795 0.91564 0.89465 0.76112 0.77790 0.87127 0.87777 0.89690 0.89409 0.92000 0.88596 0.91876 0.88134 0.78265 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.15 0.35 -2.55 16 2 C 0.17 3.38 2.89 -67.94 -0.20 3.18 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 6 N -0.71 -10.55 5.55 -61.35 -0.34 -10.89 16 7 C 0.60 9.35 7.82 -12.48 -0.10 9.25 16 8 O -0.54 -10.08 16.86 5.28 0.09 -10.00 16 9 C -0.09 -1.20 6.99 -83.55 -0.58 -1.79 16 10 C 0.09 0.88 11.27 -16.84 -0.19 0.69 16 11 N -0.37 -2.98 3.69 -61.06 -0.23 -3.21 16 12 C 0.13 0.54 5.71 -4.04 -0.02 0.52 16 13 C -0.14 -0.62 3.27 -89.09 -0.29 -0.91 16 14 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 15 C -0.15 -0.41 6.71 -24.72 -0.17 -0.58 16 16 C 0.05 0.21 7.72 38.21 0.29 0.50 16 17 O -0.38 -3.09 11.52 -35.23 -0.41 -3.50 16 18 C 0.05 0.37 6.60 37.73 0.25 0.62 16 19 N -0.07 -0.75 11.63 60.35 0.70 -0.05 16 20 N -0.20 -2.60 12.04 32.85 0.40 -2.21 16 21 N -0.72 -17.85 4.57 -53.43 -0.24 -18.10 16 22 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 26 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.82 7.75 -51.93 -0.40 1.41 16 37 H 0.40 5.19 8.16 -40.82 -0.33 4.86 16 38 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.11 0.15 8.08 -51.93 -0.42 -0.27 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.17 7.88 -51.93 -0.41 -0.24 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.84 6.38 -51.93 -0.33 0.51 16 47 H 0.38 10.12 7.80 -40.82 -0.32 9.81 16 48 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -35.15 400.16 -7.02 -42.17 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.68 Total: 8.19 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.05 Total: 1.56 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 1.01 Total: -62.17 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.32 Total: -13.49 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.15 -7.02 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.950 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds