Wall clock time and date at job start Tue Mar 31 2020 19:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46764 * 2 1 4 4 C 1.52997 * 109.47361 * 119.99862 * 2 1 3 5 5 C 1.52998 * 109.47313 * 185.00481 * 4 2 1 6 6 N 1.46502 * 109.47223 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00170 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99826 * 359.97438 * 7 6 5 9 9 C 1.47521 * 120.00270 * 179.97438 * 7 6 5 10 10 C 1.36597 * 125.77313 * 180.24177 * 9 7 6 11 11 N 1.34811 * 106.83905 * 180.16891 * 10 9 7 12 12 C 1.46508 * 126.59429 * 179.91034 * 11 10 9 13 13 C 1.53000 * 109.46907 * 124.71058 * 12 11 10 14 14 H 1.09002 * 110.43833 * 305.70160 * 13 12 11 15 15 C 1.54816 * 110.59806 * 183.07748 * 13 12 11 16 16 C 1.54989 * 102.09401 * 220.38844 * 15 13 12 17 17 O 1.44383 * 103.48976 * 37.02246 * 16 15 13 18 18 C 1.43739 * 106.97729 * 319.94114 * 17 16 15 19 19 N 1.40207 * 106.81112 * 359.64458 * 11 10 9 20 20 N 1.28761 * 108.37039 * 0.23001 * 19 11 10 21 21 N 1.46496 * 109.47358 * 240.00295 * 2 1 3 22 22 C 1.36938 * 120.00280 * 84.99930 * 21 2 1 23 23 H 1.08001 * 119.99870 * 359.97438 * 22 21 2 24 24 C 1.38810 * 119.99930 * 180.02562 * 22 21 2 25 25 N 1.31616 * 120.00171 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99950 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47055 * 89.99651 * 26 24 22 28 28 H 1.48496 * 109.47292 * 209.99872 * 26 24 22 29 29 H 1.48504 * 109.47140 * 329.99683 * 26 24 22 30 30 H 1.09001 * 109.47572 * 299.99495 * 1 2 3 31 31 H 1.09001 * 109.47523 * 60.00344 * 1 2 3 32 32 H 1.09006 * 109.47155 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47050 * 65.00273 * 4 2 1 34 34 H 1.08996 * 109.47262 * 305.00366 * 4 2 1 35 35 H 1.08995 * 109.47232 * 59.99903 * 5 4 2 36 36 H 1.09001 * 109.46834 * 299.99648 * 5 4 2 37 37 H 0.97003 * 120.00159 * 359.97438 * 6 5 4 38 38 H 1.07999 * 126.58109 * 0.06519 * 10 9 7 39 39 H 1.08994 * 109.46660 * 4.70964 * 12 11 10 40 40 H 1.08993 * 109.46847 * 244.70946 * 12 11 10 41 41 H 1.08999 * 110.90817 * 338.58839 * 15 13 12 42 42 H 1.09005 * 110.90433 * 102.19166 * 15 13 12 43 43 H 1.08999 * 110.62077 * 278.52724 * 16 15 13 44 44 H 1.08999 * 110.75439 * 155.59172 * 16 15 13 45 45 H 1.09005 * 109.87679 * 267.08788 * 18 17 16 46 46 H 1.08998 * 110.00208 * 146.00696 * 18 17 16 47 47 H 0.97007 * 119.99819 * 264.99704 * 21 2 1 48 48 H 0.97001 * 120.00186 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3042 2.5096 7 6 5.3740 -1.3396 2.7753 8 8 6.1604 -0.7982 2.0222 9 6 5.8658 -2.0350 3.9797 10 6 7.1725 -2.1394 4.3640 11 7 7.1873 -2.8511 5.5088 12 6 8.3687 -3.2197 6.2929 13 6 8.1976 -2.7319 7.7329 14 1 7.9800 -1.6640 7.7497 15 6 9.4652 -3.0400 8.5666 16 6 8.8614 -3.4968 9.9190 17 8 7.6850 -4.2378 9.5294 18 6 7.0792 -3.5214 8.4405 19 7 5.8541 -3.1655 5.8081 20 7 5.1036 -2.6694 4.8869 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0074 -2.3757 23 1 1.8918 1.0404 -2.4243 24 6 2.6114 -0.6619 -3.5092 25 7 2.9244 -1.9389 -3.4501 26 14 2.7892 0.2698 -5.1185 27 1 4.1513 0.8549 -5.2038 28 1 2.5784 -0.6616 -6.2557 29 1 1.7790 1.3569 -5.1753 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7714 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.8531 0.4371 1.3574 36 1 3.9994 -1.0727 0.4260 37 1 3.4259 -1.7358 3.1106 38 1 8.0295 -1.7315 3.8486 39 1 9.2536 -2.7576 5.8554 40 1 8.4845 -4.3034 6.2877 41 1 10.0461 -3.8410 8.1096 42 1 10.0734 -2.1445 8.6949 43 1 8.5879 -2.6351 10.5279 44 1 9.5592 -4.1390 10.4563 45 1 6.3251 -2.8336 8.8233 46 1 6.6212 -4.2220 7.7422 47 1 2.2491 -1.6317 -1.1526 48 1 3.2471 -2.3963 -4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690871989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:19 Heat of formation + Delta-G solvation = -7.219987 kcal Electronic energy + Delta-G solvation = -28173.135262 eV Core-core repulsion = 24071.349718 eV Total energy + Delta-G solvation = -4101.785544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.29622 -40.60049 -40.30710 -38.11270 -36.34308 -35.81658 -34.12597 -33.32717 -32.15941 -31.00663 -30.36543 -29.45581 -27.61658 -25.94221 -25.12243 -23.93465 -23.45555 -22.88925 -21.96754 -21.61544 -21.02219 -19.37549 -19.00528 -17.63012 -17.38823 -17.11243 -17.09561 -16.90449 -16.68261 -16.20251 -15.93960 -15.71424 -15.53003 -15.31442 -15.12529 -14.65739 -14.47386 -14.15218 -14.06867 -13.76451 -13.55346 -13.22519 -13.18745 -12.81147 -12.72885 -12.61253 -12.53304 -12.36029 -12.27441 -12.21991 -12.08388 -11.99199 -11.82425 -11.66273 -11.57548 -11.31777 -11.19960 -10.91380 -10.68137 -10.45162 -10.03757 -8.95071 -7.89524 -5.16427 0.11265 0.59263 1.02970 1.47939 1.49913 1.57531 2.12114 2.22936 2.59578 2.95443 3.15338 3.23013 3.39929 3.44436 3.68284 3.75350 3.92120 3.93758 3.95843 4.01734 4.16334 4.23786 4.24939 4.31196 4.39178 4.45316 4.49259 4.65706 4.69722 4.78717 4.79194 4.84651 4.89239 4.92693 4.98203 5.04283 5.11921 5.12547 5.23676 5.40059 5.41496 5.42468 5.57081 5.63559 5.89223 6.33104 6.42852 6.88493 7.14337 7.39016 8.16939 8.38658 9.34047 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.001757 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.626475 B =15928.555524 C =16636.517242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.704 5.704 7 C 0.597 3.403 8 O -0.575 6.575 9 C -0.123 4.123 10 C 0.114 3.886 11 N -0.349 5.349 12 C 0.121 3.879 13 C -0.131 4.131 14 H 0.093 0.907 15 C -0.135 4.135 16 C 0.034 3.966 17 O -0.406 6.406 18 C 0.049 3.951 19 N -0.082 5.082 20 N -0.221 5.221 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.075 0.925 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.968 3.032 27 H -0.291 1.291 28 H -0.298 1.298 29 H -0.269 1.269 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.415 0.585 38 H 0.237 0.763 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 -1.461 29.769 33.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.354 5.354 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.262 4.262 10 C -0.044 4.044 11 N -0.134 5.134 12 C 0.002 3.998 13 C -0.150 4.150 14 H 0.111 0.889 15 C -0.173 4.173 16 C -0.042 4.042 17 O -0.325 6.325 18 C -0.028 4.028 19 N -0.062 5.062 20 N -0.095 5.095 21 N -0.375 5.375 22 C -0.364 4.364 23 H 0.093 0.907 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.219 1.219 28 H -0.225 1.225 29 H -0.194 1.194 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.252 0.748 38 H 0.253 0.747 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.449 -1.830 30.224 33.550 hybrid contribution 0.396 0.341 -1.731 1.809 sum 14.845 -1.489 28.493 32.163 Atomic orbital electron populations 1.22264 0.97223 1.00973 1.00869 1.20443 0.93092 0.95304 0.85494 0.93531 1.21925 0.92661 1.02006 0.99039 1.21192 0.95313 0.96413 0.86015 1.45777 1.07055 1.55773 1.26797 1.17109 0.82670 0.78857 0.83159 1.90814 1.56393 1.48135 1.50041 1.21349 0.92170 1.12023 1.00669 1.23835 0.99934 0.92845 0.87755 1.50765 1.09141 1.35901 1.17589 1.22646 0.83181 1.04005 0.89955 1.22849 0.97072 1.01446 0.93667 0.88856 1.23158 0.95761 1.04260 0.94115 1.23814 0.86584 0.96668 0.97114 1.88892 1.42385 1.49432 1.51812 1.23289 0.95143 0.95681 0.88667 1.81852 0.84399 1.21530 1.18418 1.74617 1.27638 1.07001 1.00234 1.42657 1.78338 1.10228 1.06301 1.19622 1.34262 0.94127 0.88400 0.90665 1.25502 1.03417 0.96868 1.01366 1.69816 1.53008 1.10168 1.29170 0.85213 0.77731 0.77497 0.79805 1.21853 1.22461 1.19355 0.90690 0.94706 0.93800 0.91314 0.87929 0.92153 0.93898 0.74801 0.74726 0.83055 0.86831 0.88285 0.87267 0.91808 0.87358 0.93364 0.89715 0.79687 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.17 6.27 2.89 44.99 0.13 6.40 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 C -0.12 -3.58 4.87 30.59 0.15 -3.43 16 5 C 0.13 4.62 5.56 86.38 0.48 5.10 16 6 N -0.70 -20.93 5.55 -466.28 -2.59 -23.52 16 7 C 0.60 18.80 7.82 86.69 0.68 19.48 16 8 O -0.57 -22.00 16.86 -4.01 -0.07 -22.06 16 9 C -0.12 -3.06 6.99 40.82 0.29 -2.77 16 10 C 0.11 1.91 11.27 83.85 0.95 2.85 16 11 N -0.35 -4.97 3.69 -347.10 -1.28 -6.25 16 12 C 0.12 0.62 5.71 86.38 0.49 1.12 16 13 C -0.13 -0.87 3.27 -9.80 -0.03 -0.90 16 14 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 15 C -0.14 -0.32 6.71 31.89 0.21 -0.11 16 16 C 0.03 0.25 7.72 72.66 0.56 0.81 16 17 O -0.41 -6.47 11.52 -148.98 -1.72 -8.19 16 18 C 0.05 0.69 6.60 72.35 0.48 1.16 16 19 N -0.08 -1.77 11.63 37.02 0.43 -1.34 16 20 N -0.22 -5.62 12.04 -49.99 -0.60 -6.22 16 21 N -0.73 -36.78 4.57 -322.96 -1.48 -38.26 16 22 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 25 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 26 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 27 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.87 7.75 -2.39 -0.02 1.85 16 37 H 0.42 10.45 8.16 -92.71 -0.76 9.70 16 38 H 0.24 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.15 -0.36 8.08 -2.39 -0.02 -0.38 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.00 7.88 -2.39 -0.02 -0.02 16 42 H 0.11 -0.14 8.14 -2.38 -0.02 -0.16 16 43 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 1.42 6.38 -2.39 -0.02 1.41 16 47 H 0.37 20.21 7.80 -92.70 -0.72 19.48 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -79.76 400.16 0.87 -78.88 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.50 Total: 29.21 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 6.36 Total: 8.87 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -5.24 Total: -136.13 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.78 Total: -30.26 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -79.76 0.87 -78.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.663 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds