Wall clock time and date at job start Tue Mar 31 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 C 1.52998 * 109.47478 * 240.00058 * 2 1 3 5 5 C 1.53000 * 109.47639 * 174.99836 * 4 2 1 6 6 N 1.46492 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00113 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.36589 * 125.77161 * 179.97438 * 9 7 6 11 11 N 1.34817 * 106.83946 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59595 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47116 * 125.00163 * 12 11 10 14 14 H 1.08999 * 110.45598 * 52.40263 * 13 12 11 15 15 C 1.54513 * 110.50910 * 174.99983 * 13 12 11 16 16 C 1.54476 * 104.06005 * 118.64663 * 15 13 12 17 17 O 1.44426 * 104.80510 * 23.98011 * 16 15 13 18 18 C 1.44423 * 105.27374 * 319.48735 * 17 16 15 19 19 N 1.40212 * 106.81108 * 0.02562 * 11 10 9 20 20 N 1.28764 * 108.36638 * 359.97438 * 19 11 10 21 21 N 1.46501 * 109.47076 * 119.99813 * 2 1 3 22 22 C 1.36929 * 120.00057 * 275.00014 * 21 2 1 23 23 H 1.07999 * 120.00224 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99940 * 179.97438 * 22 21 2 25 25 N 1.31616 * 119.99947 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00044 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47162 * 90.00529 * 26 24 22 28 28 H 1.48503 * 109.46825 * 210.00577 * 26 24 22 29 29 H 1.48503 * 109.47113 * 330.00571 * 26 24 22 30 30 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47308 * 299.99956 * 1 2 3 32 32 H 1.09006 * 109.46764 * 59.99995 * 1 2 3 33 33 H 1.08999 * 109.47099 * 54.99812 * 4 2 1 34 34 H 1.09002 * 109.47233 * 295.00545 * 4 2 1 35 35 H 1.08999 * 109.46895 * 59.99851 * 5 4 2 36 36 H 1.08996 * 109.46725 * 300.00489 * 5 4 2 37 37 H 0.97004 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.07995 * 126.58198 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.47393 * 245.00780 * 12 11 10 40 40 H 1.09005 * 109.46588 * 5.00277 * 12 11 10 41 41 H 1.09003 * 110.51253 * 237.29183 * 15 13 12 42 42 H 1.09004 * 110.51260 * 0.02562 * 15 13 12 43 43 H 1.09001 * 110.36857 * 142.80848 * 16 15 13 44 44 H 1.09003 * 110.37146 * 265.14561 * 16 15 13 45 45 H 1.09004 * 110.36994 * 281.68277 * 18 17 16 46 46 H 1.08993 * 110.37355 * 159.34734 * 18 17 16 47 47 H 0.97004 * 119.99763 * 94.99812 * 21 2 1 48 48 H 0.97002 * 120.00508 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0533 -1.3043 -2.5095 7 6 5.3743 -1.3406 -2.7746 8 8 6.1606 -0.8001 -2.0209 9 6 5.8662 -2.0370 -3.9785 10 6 7.1732 -2.1459 -4.3598 11 7 7.1876 -2.8532 -5.5074 12 6 8.3691 -3.2231 -6.2907 13 6 8.3925 -4.7394 -6.4934 14 1 7.4426 -5.0837 -6.9024 15 6 9.5597 -5.1435 -7.4216 16 6 10.4392 -6.0592 -6.5416 17 8 9.5421 -6.5752 -5.5341 18 6 8.7047 -5.4587 -5.1625 19 7 5.8543 -3.1668 -5.8072 20 7 5.1038 -2.6708 -4.8859 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0403 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7890 0.2698 5.1186 27 1 1.5211 0.1784 5.8861 28 1 3.8934 -0.3235 5.9146 29 1 3.0940 1.6951 4.8343 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7715 -1.2056 35 1 3.9995 -1.0727 -0.4260 36 1 3.8532 0.4370 -1.3573 37 1 3.4260 -1.7358 -3.1105 38 1 8.0306 -1.7421 -3.8419 39 1 8.3318 -2.7273 -7.2607 40 1 9.2689 -2.9136 -5.7589 41 1 9.1872 -5.6898 -8.2881 42 1 10.1205 -4.2631 -7.7356 43 1 10.8514 -6.8746 -7.1360 44 1 11.2404 -5.4840 -6.0775 45 1 9.2400 -4.7913 -4.4870 46 1 7.7847 -5.8126 -4.6975 47 1 2.2490 -1.6318 1.1526 48 1 3.2477 -2.3963 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690871990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:22 Heat of formation + Delta-G solvation = 18.230106 kcal Electronic energy + Delta-G solvation = -28252.280574 eV Core-core repulsion = 24151.598629 eV Total energy + Delta-G solvation = -4100.681945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.47845 -40.06861 -39.17886 -36.52366 -35.74476 -34.32700 -32.79848 -32.20565 -31.18319 -30.02306 -29.15403 -28.05338 -26.98782 -24.34287 -23.71816 -23.48510 -22.50565 -22.09466 -21.24235 -20.38014 -19.65513 -18.36515 -17.24458 -17.05586 -16.70714 -16.18630 -16.07716 -15.85779 -15.68032 -15.26319 -14.83141 -14.74112 -14.39781 -13.94240 -13.83797 -13.62347 -13.42602 -13.28803 -12.89335 -12.51862 -12.44243 -12.37412 -12.05592 -11.98291 -11.82132 -11.57294 -11.48617 -11.27833 -11.02497 -10.86847 -10.70311 -10.65166 -10.58706 -10.38315 -10.26452 -10.05781 -9.79950 -9.58458 -9.51659 -8.87107 -8.74208 -6.89589 -5.69782 -2.98251 0.86923 1.59521 1.64281 3.24856 3.31661 3.36223 3.48576 3.53736 3.55472 3.67579 3.81193 4.05296 4.09248 4.22467 4.37948 4.53951 4.60490 4.63977 4.65456 4.67669 4.78901 4.97474 5.07747 5.15869 5.20831 5.30002 5.35368 5.42486 5.47266 5.58637 5.62183 5.76530 5.93887 6.01010 6.14611 6.17718 6.23778 6.40644 6.45767 6.52827 6.72296 6.76919 6.92476 7.12334 7.55015 7.76924 7.81029 8.33253 8.48540 9.59835 10.17138 10.51813 11.52848 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.001921 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.913745 B =14569.438806 C =15571.871953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.597 3.403 8 O -0.536 6.536 9 C -0.093 4.093 10 C 0.091 3.909 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.138 4.138 14 H 0.105 0.895 15 C -0.147 4.147 16 C 0.042 3.958 17 O -0.370 6.370 18 C 0.049 3.951 19 N -0.065 5.065 20 N -0.203 5.203 21 N -0.723 5.723 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.205 0.795 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.108 -4.542 -26.906 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.361 5.361 7 C 0.380 3.620 8 O -0.412 6.412 9 C -0.233 4.233 10 C -0.065 4.065 11 N -0.150 5.150 12 C 0.010 3.990 13 C -0.158 4.158 14 H 0.123 0.877 15 C -0.185 4.185 16 C -0.035 4.035 17 O -0.288 6.288 18 C -0.028 4.028 19 N -0.045 5.045 20 N -0.077 5.077 21 N -0.365 5.365 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.222 0.778 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.773 -4.932 -27.113 30.808 hybrid contribution 0.618 0.604 1.155 1.443 sum 14.391 -4.328 -25.958 29.994 Atomic orbital electron populations 1.22421 0.99133 1.00858 0.99927 1.20156 0.91879 0.95572 0.86010 0.93255 1.22066 0.93774 1.01980 0.99362 1.21519 0.94588 0.97150 0.86762 1.45914 1.06698 1.56018 1.27452 1.16745 0.82984 0.79490 0.82742 1.90847 1.55580 1.46345 1.48402 1.21614 0.90633 1.10154 1.00863 1.23407 1.00372 0.94809 0.87908 1.50485 1.09074 1.37537 1.17878 1.22151 0.83796 0.96060 0.96984 1.22927 1.01928 0.93337 0.97575 0.87715 1.22961 0.95806 1.00710 0.99004 1.23470 0.92757 0.97833 0.89471 1.89198 1.49212 1.32592 1.57829 1.23515 0.95501 0.88711 0.95080 1.81960 0.82844 1.21059 1.18617 1.74649 1.26646 1.06460 0.99940 1.42460 1.78068 1.10677 1.05339 1.19223 1.36341 0.93839 0.87338 0.91212 1.24729 1.02290 0.95973 0.98023 1.69655 1.50998 1.08657 1.28781 0.86218 0.77184 0.78851 0.84111 1.21886 1.21861 1.20793 0.93503 0.92763 0.94560 0.91800 0.91465 0.89458 0.91561 0.76119 0.77837 0.87804 0.87389 0.89622 0.89801 0.88687 0.91937 0.91934 0.88737 0.78263 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.38 2.89 -67.93 -0.20 3.18 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.12 2.08 5.56 -4.05 -0.02 2.06 16 6 N -0.71 -10.55 5.55 -61.36 -0.34 -10.89 16 7 C 0.60 9.34 7.82 -12.48 -0.10 9.24 16 8 O -0.54 -10.08 16.86 5.28 0.09 -9.99 16 9 C -0.09 -1.19 6.99 -83.55 -0.58 -1.77 16 10 C 0.09 0.85 11.27 -16.84 -0.19 0.66 16 11 N -0.36 -2.91 3.58 -61.06 -0.22 -3.13 16 12 C 0.13 0.50 5.69 -4.04 -0.02 0.48 16 13 C -0.14 -0.66 3.24 -89.05 -0.29 -0.95 16 14 H 0.10 0.65 8.06 -51.93 -0.42 0.24 16 15 C -0.15 -0.43 6.74 -25.16 -0.17 -0.60 16 16 C 0.04 0.19 7.63 37.93 0.29 0.48 16 17 O -0.37 -3.13 11.65 -35.23 -0.41 -3.54 16 18 C 0.05 0.34 7.08 37.93 0.27 0.61 16 19 N -0.06 -0.73 13.58 60.35 0.82 0.09 16 20 N -0.20 -2.62 12.04 32.85 0.40 -2.22 16 21 N -0.72 -17.87 4.57 -53.43 -0.24 -18.11 16 22 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 26 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.40 5.19 8.16 -40.82 -0.33 4.86 16 38 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.11 0.15 7.90 -51.93 -0.41 -0.26 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.08 7.73 -51.93 -0.40 -0.33 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.38 10.13 7.80 -40.82 -0.32 9.82 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -35.38 403.45 -6.89 -42.27 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.73 Total: 8.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.04 Total: 1.39 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 1.14 Total: -62.03 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.32 Total: -13.53 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.38 -6.89 -42.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.500 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds