Wall clock time and date at job start Tue Mar 31 2020 19:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 C 1.52998 * 109.47478 * 240.00058 * 2 1 3 5 5 C 1.53000 * 109.47639 * 174.99836 * 4 2 1 6 6 N 1.46492 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00113 * 180.02562 * 6 5 4 8 8 O 1.21595 * 119.99630 * 0.02562 * 7 6 5 9 9 C 1.47522 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.36589 * 125.77161 * 179.97438 * 9 7 6 11 11 N 1.34817 * 106.83946 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59595 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47116 * 125.00163 * 12 11 10 14 14 H 1.08999 * 110.45598 * 52.40263 * 13 12 11 15 15 C 1.54513 * 110.50910 * 174.99983 * 13 12 11 16 16 C 1.54476 * 104.06005 * 118.64663 * 15 13 12 17 17 O 1.44426 * 104.80510 * 23.98011 * 16 15 13 18 18 C 1.44423 * 105.27374 * 319.48735 * 17 16 15 19 19 N 1.40212 * 106.81108 * 0.02562 * 11 10 9 20 20 N 1.28764 * 108.36638 * 359.97438 * 19 11 10 21 21 N 1.46501 * 109.47076 * 119.99813 * 2 1 3 22 22 C 1.36929 * 120.00057 * 275.00014 * 21 2 1 23 23 H 1.07999 * 120.00224 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99940 * 179.97438 * 22 21 2 25 25 N 1.31616 * 119.99947 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00044 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47162 * 90.00529 * 26 24 22 28 28 H 1.48503 * 109.46825 * 210.00577 * 26 24 22 29 29 H 1.48503 * 109.47113 * 330.00571 * 26 24 22 30 30 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47308 * 299.99956 * 1 2 3 32 32 H 1.09006 * 109.46764 * 59.99995 * 1 2 3 33 33 H 1.08999 * 109.47099 * 54.99812 * 4 2 1 34 34 H 1.09002 * 109.47233 * 295.00545 * 4 2 1 35 35 H 1.08999 * 109.46895 * 59.99851 * 5 4 2 36 36 H 1.08996 * 109.46725 * 300.00489 * 5 4 2 37 37 H 0.97004 * 120.00086 * 0.02562 * 6 5 4 38 38 H 1.07995 * 126.58198 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.47393 * 245.00780 * 12 11 10 40 40 H 1.09005 * 109.46588 * 5.00277 * 12 11 10 41 41 H 1.09003 * 110.51253 * 237.29183 * 15 13 12 42 42 H 1.09004 * 110.51260 * 0.02562 * 15 13 12 43 43 H 1.09001 * 110.36857 * 142.80848 * 16 15 13 44 44 H 1.09003 * 110.37146 * 265.14561 * 16 15 13 45 45 H 1.09004 * 110.36994 * 281.68277 * 18 17 16 46 46 H 1.08993 * 110.37355 * 159.34734 * 18 17 16 47 47 H 0.97004 * 119.99763 * 94.99812 * 21 2 1 48 48 H 0.97002 * 120.00508 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0533 -1.3043 -2.5095 7 6 5.3743 -1.3406 -2.7746 8 8 6.1606 -0.8001 -2.0209 9 6 5.8662 -2.0370 -3.9785 10 6 7.1732 -2.1459 -4.3598 11 7 7.1876 -2.8532 -5.5074 12 6 8.3691 -3.2231 -6.2907 13 6 8.3925 -4.7394 -6.4934 14 1 7.4426 -5.0837 -6.9024 15 6 9.5597 -5.1435 -7.4216 16 6 10.4392 -6.0592 -6.5416 17 8 9.5421 -6.5752 -5.5341 18 6 8.7047 -5.4587 -5.1625 19 7 5.8543 -3.1668 -5.8072 20 7 5.1038 -2.6708 -4.8859 21 7 2.0183 -0.6906 1.1962 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0403 2.4243 24 6 2.6113 -0.6620 3.5093 25 7 2.9243 -1.9390 3.4502 26 14 2.7890 0.2698 5.1186 27 1 1.5211 0.1784 5.8861 28 1 3.8934 -0.3235 5.9146 29 1 3.0940 1.6951 4.8343 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7715 -1.2056 35 1 3.9995 -1.0727 -0.4260 36 1 3.8532 0.4370 -1.3573 37 1 3.4260 -1.7358 -3.1105 38 1 8.0306 -1.7421 -3.8419 39 1 8.3318 -2.7273 -7.2607 40 1 9.2689 -2.9136 -5.7589 41 1 9.1872 -5.6898 -8.2881 42 1 10.1205 -4.2631 -7.7356 43 1 10.8514 -6.8746 -7.1360 44 1 11.2404 -5.4840 -6.0775 45 1 9.2400 -4.7913 -4.4870 46 1 7.7847 -5.8126 -4.6975 47 1 2.2490 -1.6318 1.1526 48 1 3.2477 -2.3963 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690871990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:21 Heat of formation + Delta-G solvation = -9.104522 kcal Electronic energy + Delta-G solvation = -28253.465892 eV Core-core repulsion = 24151.598629 eV Total energy + Delta-G solvation = -4101.867263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28541 -40.61364 -40.33398 -38.11239 -36.35286 -35.81836 -34.12712 -33.34557 -32.13272 -30.97168 -30.36850 -29.49423 -27.55665 -25.92803 -25.09687 -24.18502 -23.39194 -23.02772 -21.98479 -21.51381 -20.89002 -19.38893 -19.05423 -17.75258 -17.36374 -17.11796 -16.95449 -16.80362 -16.52101 -16.35554 -16.11986 -15.65796 -15.55721 -15.30815 -15.11566 -14.92936 -14.39854 -14.12121 -13.99883 -13.76784 -13.55394 -13.22357 -13.13314 -12.97017 -12.80027 -12.61581 -12.43631 -12.39449 -12.27775 -12.21039 -12.16202 -12.10150 -11.65904 -11.60896 -11.57640 -11.29381 -11.20067 -10.91234 -10.84499 -10.44506 -10.03450 -8.95228 -7.89603 -5.16483 0.11540 0.59781 1.04033 1.47797 1.49479 1.57547 2.12273 2.23151 2.59445 2.89995 3.14528 3.24975 3.44273 3.46952 3.72717 3.73720 3.90925 3.93675 3.95156 4.01794 4.07343 4.18371 4.24554 4.29743 4.38155 4.39703 4.50078 4.66074 4.67319 4.69965 4.78669 4.81020 4.87805 4.91791 5.00832 5.04348 5.11570 5.12627 5.23719 5.41284 5.41738 5.42565 5.56992 5.63644 5.77328 6.32993 6.42913 6.88672 7.14489 7.38853 8.16871 8.38516 9.33989 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.001921 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.913745 B =14569.438806 C =15571.871953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.134 3.866 6 N -0.704 5.704 7 C 0.596 3.404 8 O -0.575 6.575 9 C -0.122 4.122 10 C 0.111 3.889 11 N -0.347 5.347 12 C 0.122 3.878 13 C -0.131 4.131 14 H 0.085 0.915 15 C -0.136 4.136 16 C 0.032 3.968 17 O -0.405 6.405 18 C 0.044 3.956 19 N -0.080 5.080 20 N -0.222 5.222 21 N -0.735 5.735 22 C -0.231 4.231 23 H 0.076 0.924 24 C -0.081 4.081 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.270 1.270 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.415 0.585 38 H 0.235 0.765 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.371 0.629 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -3.239 -29.355 33.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.354 5.354 7 C 0.382 3.618 8 O -0.454 6.454 9 C -0.261 4.261 10 C -0.047 4.047 11 N -0.132 5.132 12 C 0.003 3.997 13 C -0.151 4.151 14 H 0.104 0.896 15 C -0.174 4.174 16 C -0.044 4.044 17 O -0.325 6.325 18 C -0.033 4.033 19 N -0.060 5.060 20 N -0.096 5.096 21 N -0.375 5.375 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.273 4.273 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.195 1.195 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.252 0.748 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.203 0.797 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.710 -3.615 -29.649 33.294 hybrid contribution 0.388 0.165 1.765 1.815 sum 15.098 -3.450 -27.884 31.896 Atomic orbital electron populations 1.22265 0.97207 1.00967 1.00891 1.20448 0.93101 0.95308 0.85489 0.93520 1.21927 0.92653 1.01994 0.99049 1.21191 0.95320 0.96420 0.86014 1.45774 1.07046 1.55774 1.26800 1.17121 0.82675 0.78869 0.83180 1.90814 1.56399 1.48175 1.50002 1.21335 0.92151 1.11984 1.00651 1.23811 0.99928 0.93384 0.87600 1.50748 1.09099 1.35925 1.17405 1.22683 0.83226 0.95401 0.98343 1.22816 1.01865 0.93761 0.96654 0.89614 1.22941 0.94812 1.01552 0.98090 1.23728 0.92825 0.98653 0.89168 1.89159 1.50224 1.33951 1.59142 1.23544 0.94545 0.88757 0.96437 1.81877 0.84352 1.21301 1.18477 1.74615 1.27607 1.07013 1.00359 1.42660 1.78338 1.10236 1.06300 1.19614 1.34176 0.94131 0.88364 0.90657 1.25514 1.03461 0.96902 1.01395 1.69817 1.53028 1.10207 1.29151 0.85210 0.76724 0.78097 0.80201 1.21544 1.22623 1.19493 0.93818 0.94689 0.90660 0.87892 0.91336 0.93929 0.92139 0.74796 0.74903 0.85198 0.83859 0.89483 0.86689 0.88099 0.90503 0.90829 0.91391 0.79698 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.17 6.28 2.89 44.99 0.13 6.41 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 C -0.12 -3.59 4.87 30.59 0.15 -3.44 16 5 C 0.13 4.63 5.56 86.38 0.48 5.11 16 6 N -0.70 -20.98 5.55 -466.30 -2.59 -23.57 16 7 C 0.60 18.86 7.82 86.69 0.68 19.53 16 8 O -0.57 -22.09 16.86 -4.01 -0.07 -22.16 16 9 C -0.12 -3.04 6.99 40.81 0.29 -2.75 16 10 C 0.11 1.85 11.27 83.85 0.95 2.79 16 11 N -0.35 -4.77 3.58 -347.10 -1.24 -6.01 16 12 C 0.12 0.50 5.69 86.38 0.49 0.99 16 13 C -0.13 -0.99 3.24 -9.78 -0.03 -1.02 16 14 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 15 C -0.14 -0.41 6.74 31.61 0.21 -0.19 16 16 C 0.03 0.23 7.63 72.48 0.55 0.78 16 17 O -0.41 -6.72 11.65 -148.98 -1.74 -8.46 16 18 C 0.04 0.58 7.08 72.48 0.51 1.09 16 19 N -0.08 -1.71 13.58 37.02 0.50 -1.20 16 20 N -0.22 -5.62 12.04 -50.00 -0.60 -6.22 16 21 N -0.73 -36.88 4.57 -322.95 -1.48 -38.36 16 22 C -0.23 -12.94 9.93 84.04 0.83 -12.11 16 23 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 25 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 26 Si 0.97 47.57 29.55 68.60 2.03 49.60 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 29 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.86 7.75 -2.39 -0.02 1.84 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.42 10.46 8.16 -92.70 -0.76 9.71 16 38 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.14 -0.32 7.90 -2.38 -0.02 -0.34 16 41 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.11 -0.34 7.73 -2.39 -0.02 -0.36 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.07 0.76 7.74 -2.39 -0.02 0.74 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.37 20.27 7.80 -92.71 -0.72 19.54 16 48 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.77 403.45 0.99 -79.78 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.50 Total: 29.00 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.39 Total: 8.41 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -5.13 Total: -136.17 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.80 Total: -30.62 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -80.77 0.99 -79.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690871990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.676 kcal (2) G-P(sol) polarization free energy of solvation -80.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds