Wall clock time and date at job start Tue Mar 31 2020 20:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47289 * 2 1 4 4 C 1.46900 * 111.00194 * 76.02636 * 3 2 1 5 5 C 1.53002 * 109.47257 * 199.54561 * 4 3 2 6 6 N 1.46496 * 109.47109 * 174.88626 * 5 4 3 7 7 C 1.34776 * 119.99923 * 180.27691 * 6 5 4 8 8 O 1.21601 * 120.00257 * 359.72646 * 7 6 5 9 9 C 1.47436 * 119.99910 * 179.72204 * 7 6 5 10 10 C 1.41285 * 126.41326 * 359.68982 * 9 7 6 11 11 N 1.30448 * 108.02285 * 179.85004 * 10 9 7 12 12 N 1.39937 * 108.89345 * 0.40993 * 11 10 9 13 13 C 1.46504 * 125.75298 * 179.73291 * 12 11 10 14 14 C 1.53005 * 109.47140 * 305.00098 * 13 12 11 15 15 C 1.34257 * 108.49315 * 359.73875 * 12 11 10 16 16 C 1.46898 * 111.00125 * 199.98011 * 3 2 1 17 17 C 1.50699 * 109.47143 * 66.04161 * 16 3 2 18 18 O 1.21287 * 120.00185 * 0.02562 * 17 16 3 19 19 N 1.34777 * 120.00289 * 179.97438 * 17 16 3 20 20 C 1.37095 * 120.00247 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99869 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99649 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47232 * 90.00420 * 24 22 20 26 26 H 1.48508 * 109.46768 * 210.00353 * 24 22 20 27 27 H 1.48496 * 109.47495 * 330.00000 * 24 22 20 28 28 H 1.09002 * 109.47158 * 54.87474 * 1 2 3 29 29 H 1.09002 * 109.47328 * 174.87192 * 1 2 3 30 30 H 1.08997 * 109.47344 * 294.87164 * 1 2 3 31 31 H 1.09004 * 109.47258 * 239.99867 * 2 1 3 32 32 H 1.09006 * 109.47036 * 119.99816 * 2 1 3 33 33 H 1.09002 * 109.47460 * 79.54679 * 4 3 2 34 34 H 1.09001 * 109.46637 * 319.54707 * 4 3 2 35 35 H 1.08998 * 109.46610 * 54.88596 * 5 4 3 36 36 H 1.08990 * 109.47011 * 294.88907 * 5 4 3 37 37 H 0.97004 * 120.00059 * 0.02562 * 6 5 4 38 38 H 1.08002 * 125.99112 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.47122 * 65.00119 * 13 12 11 40 40 H 1.09001 * 109.46898 * 185.00302 * 13 12 11 41 41 H 1.08998 * 109.46598 * 60.00080 * 14 13 12 42 42 H 1.09001 * 109.46564 * 180.02562 * 14 13 12 43 43 H 1.08995 * 109.47130 * 300.00016 * 14 13 12 44 44 H 1.08000 * 126.29157 * 180.02562 * 15 12 11 45 45 H 1.08997 * 109.47492 * 186.04833 * 16 3 2 46 46 H 1.09003 * 109.47211 * 306.04443 * 16 3 2 47 47 H 0.97002 * 119.99976 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99902 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8829 1.9917 1.3308 5 6 1.9279 3.5158 1.2036 6 7 1.6698 4.1228 2.5116 7 6 1.6547 5.4643 2.6408 8 8 1.8601 6.1707 1.6725 9 6 1.3889 6.0753 3.9560 10 6 1.1281 5.3882 5.1626 11 7 0.9478 6.2757 6.1016 12 7 1.0734 7.5542 5.5468 13 6 0.9346 8.8195 6.2721 14 6 -0.4189 8.8529 6.9849 15 6 1.3424 7.4259 4.2377 16 6 3.4103 1.4516 -0.4686 17 6 3.4712 1.0497 -1.9197 18 8 2.4560 0.7388 -2.5061 19 7 4.6536 1.0368 -2.5664 20 6 4.7090 0.6717 -3.8867 21 1 3.8049 0.3948 -4.4087 22 6 5.9280 0.6588 -4.5534 23 7 7.0279 0.9962 -3.9183 24 14 6.0033 0.1620 -6.3526 25 1 5.8314 1.3651 -7.2059 26 1 7.3193 -0.4639 -6.6386 27 1 4.9192 -0.8102 -6.6435 28 1 -0.3633 0.5913 -0.8405 29 1 -0.3634 -1.0236 -0.0919 30 1 -0.3634 0.4322 0.9323 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7004 1.6562 1.9689 34 1 0.9319 1.6917 1.7709 35 1 1.1678 3.8437 0.4945 36 1 2.9119 3.8218 0.8487 37 1 1.5062 3.5593 3.2841 38 1 1.0873 4.3161 5.2865 39 1 1.7346 8.9065 7.0072 40 1 0.9954 9.6500 5.5688 41 1 -0.4797 8.0224 7.6882 42 1 -0.5223 9.7945 7.5242 43 1 -1.2189 8.7659 6.2498 44 1 1.4948 8.2312 3.5345 45 1 3.7827 2.4700 -0.3576 46 1 4.0258 0.7733 0.1224 47 1 5.4655 1.2858 -2.0976 48 1 7.8789 0.9868 -4.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691012073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:27 Heat of formation + Delta-G solvation = 9.671624 kcal Electronic energy + Delta-G solvation = -28157.802834 eV Core-core repulsion = 24056.749765 eV Total energy + Delta-G solvation = -4101.053068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71119 -39.35748 -38.63953 -36.82091 -35.00683 -34.63470 -33.76942 -31.33824 -30.98609 -30.90441 -30.18590 -28.81309 -26.24638 -24.58979 -24.13585 -23.30598 -22.13637 -21.08012 -20.91711 -20.06141 -19.11647 -18.21143 -17.81551 -16.39303 -16.30066 -16.07518 -15.85634 -15.50660 -15.06426 -14.76439 -14.70130 -14.57045 -14.28374 -14.00964 -13.83551 -13.69230 -13.41366 -13.18852 -13.13219 -12.88833 -12.65756 -12.34613 -12.13568 -12.03305 -11.66360 -11.53866 -11.44418 -11.38443 -11.31424 -11.07877 -10.73589 -10.47995 -10.35792 -10.17435 -9.98574 -9.94528 -9.42168 -9.19083 -8.88425 -8.38336 -7.94276 -7.86791 -6.37205 -3.77713 1.24013 1.87274 1.91486 3.09884 3.21419 3.29747 3.35494 3.36678 3.91323 3.95406 4.11420 4.30597 4.34678 4.38751 4.47020 4.62104 4.80743 4.90731 4.97547 5.06107 5.07250 5.17094 5.24254 5.29355 5.39652 5.41690 5.48533 5.54407 5.63669 5.83646 5.88340 5.91868 5.97048 6.03053 6.06227 6.18312 6.32272 6.41290 6.42820 6.50193 6.60180 7.15260 7.30831 7.38252 7.49958 7.59557 8.11021 8.24117 8.66625 9.22803 9.59535 10.11331 10.80598 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.001845 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.576299 B =15172.405259 C =16250.690789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.044 3.956 5 C 0.123 3.877 6 N -0.725 5.725 7 C 0.593 3.407 8 O -0.546 6.546 9 C -0.292 4.292 10 C 0.080 3.920 11 N -0.296 5.296 12 N -0.362 5.362 13 C 0.125 3.875 14 C -0.166 4.166 15 C 0.128 3.872 16 C 0.042 3.958 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.189 0.811 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.188 0.812 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 11.489 24.077 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.085 4.085 5 C 0.000 4.000 6 N -0.377 5.377 7 C 0.381 3.619 8 O -0.424 6.424 9 C -0.307 4.307 10 C -0.108 4.108 11 N -0.116 5.116 12 N -0.141 5.141 13 C 0.005 3.995 14 C -0.224 4.224 15 C -0.024 4.024 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.206 0.794 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.205 0.795 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.782 12.371 23.892 29.371 hybrid contribution 1.356 -0.883 -0.490 1.691 sum -10.426 11.488 23.402 28.077 Atomic orbital electron populations 1.21690 0.95281 1.01048 1.01608 1.22161 0.96000 0.87933 1.01340 1.61439 1.19998 1.19512 1.22690 1.22260 1.01459 0.93721 0.91042 1.21336 1.02706 0.92051 0.83927 1.45670 1.73565 1.06347 1.12096 1.17183 0.76228 0.81790 0.86742 1.90809 1.50063 1.61689 1.39837 1.20281 1.22119 0.92944 0.95350 1.24063 0.97136 0.99796 0.89774 1.77128 1.24560 0.87359 1.22540 1.48652 1.52578 1.06449 1.06416 1.21850 1.00076 0.80648 0.96951 1.22062 0.95452 1.03516 1.01357 1.23020 0.95034 0.98270 0.86027 1.21946 0.88968 1.01972 0.96023 1.19713 0.84550 0.84862 0.87942 1.90506 1.34069 1.53169 1.68210 1.41870 1.07468 1.59497 1.11337 1.19695 0.95117 1.41871 0.86050 0.87913 1.25252 0.94817 0.97553 1.00349 1.69614 0.98707 1.48543 1.37487 0.85864 0.77500 0.78805 0.82143 1.20422 1.21011 1.19462 0.91388 0.92897 0.93889 0.88496 0.95950 0.94311 0.90220 0.90142 0.91215 0.77020 0.79406 0.89227 0.88127 0.90924 0.90405 0.91899 0.79471 0.89233 0.93414 0.77524 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.96 37.15 0.37 -1.53 16 2 C 0.05 0.83 5.18 -3.83 -0.02 0.81 16 3 N -0.51 -8.26 4.10 -236.07 -0.97 -9.23 16 4 C 0.04 0.53 4.92 -3.82 -0.02 0.51 16 5 C 0.12 1.59 5.70 -4.04 -0.02 1.56 16 6 N -0.73 -7.60 5.55 -61.39 -0.34 -7.94 16 7 C 0.59 7.50 7.81 -12.52 -0.10 7.40 16 8 O -0.55 -9.17 16.90 5.28 0.09 -9.08 16 9 C -0.29 -2.95 6.13 -105.07 -0.64 -3.60 16 10 C 0.08 0.67 11.50 -16.98 -0.20 0.48 16 11 N -0.30 -2.78 12.33 30.86 0.38 -2.40 16 12 N -0.36 -2.82 3.65 -60.81 -0.22 -3.05 16 13 C 0.13 0.52 7.21 -4.04 -0.03 0.49 16 14 C -0.17 -0.64 10.09 37.16 0.37 -0.27 16 15 C 0.13 1.11 11.25 -16.56 -0.19 0.92 16 16 C 0.04 0.75 5.27 -4.98 -0.03 0.73 16 17 C 0.44 10.48 7.29 -10.99 -0.08 10.40 16 18 O -0.58 -15.39 14.12 5.55 0.08 -15.31 16 19 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.49 6.91 -51.93 -0.36 0.14 16 31 H 0.10 1.88 5.85 -51.93 -0.30 1.58 16 32 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 33 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 34 H 0.08 0.82 6.58 -51.93 -0.34 0.48 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.01 6.95 -51.93 -0.36 0.64 16 37 H 0.40 2.83 7.43 -40.82 -0.30 2.52 16 38 H 0.19 0.94 7.50 -52.49 -0.39 0.55 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.18 8.06 -51.93 -0.42 -0.24 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -35.95 401.89 -7.40 -43.35 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.30 Total: 10.00 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.82 Total: 9.90 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.48 Total: -61.17 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.95 -7.40 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691012073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.017 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds