Wall clock time and date at job start Tue Mar 31 2020 20:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47289 * 2 1 4 4 C 1.46900 * 111.00194 * 76.02636 * 3 2 1 5 5 C 1.53002 * 109.47257 * 199.54561 * 4 3 2 6 6 N 1.46496 * 109.47109 * 174.88626 * 5 4 3 7 7 C 1.34776 * 119.99923 * 180.27691 * 6 5 4 8 8 O 1.21601 * 120.00257 * 359.72646 * 7 6 5 9 9 C 1.47436 * 119.99910 * 179.72204 * 7 6 5 10 10 C 1.41285 * 126.41326 * 359.68982 * 9 7 6 11 11 N 1.30448 * 108.02285 * 179.85004 * 10 9 7 12 12 N 1.39937 * 108.89345 * 0.40993 * 11 10 9 13 13 C 1.46504 * 125.75298 * 179.73291 * 12 11 10 14 14 C 1.53005 * 109.47140 * 305.00098 * 13 12 11 15 15 C 1.34257 * 108.49315 * 359.73875 * 12 11 10 16 16 C 1.46898 * 111.00125 * 199.98011 * 3 2 1 17 17 C 1.50699 * 109.47143 * 66.04161 * 16 3 2 18 18 O 1.21287 * 120.00185 * 0.02562 * 17 16 3 19 19 N 1.34777 * 120.00289 * 179.97438 * 17 16 3 20 20 C 1.37095 * 120.00247 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99838 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99869 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99649 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47232 * 90.00420 * 24 22 20 26 26 H 1.48508 * 109.46768 * 210.00353 * 24 22 20 27 27 H 1.48496 * 109.47495 * 330.00000 * 24 22 20 28 28 H 1.09002 * 109.47158 * 54.87474 * 1 2 3 29 29 H 1.09002 * 109.47328 * 174.87192 * 1 2 3 30 30 H 1.08997 * 109.47344 * 294.87164 * 1 2 3 31 31 H 1.09004 * 109.47258 * 239.99867 * 2 1 3 32 32 H 1.09006 * 109.47036 * 119.99816 * 2 1 3 33 33 H 1.09002 * 109.47460 * 79.54679 * 4 3 2 34 34 H 1.09001 * 109.46637 * 319.54707 * 4 3 2 35 35 H 1.08998 * 109.46610 * 54.88596 * 5 4 3 36 36 H 1.08990 * 109.47011 * 294.88907 * 5 4 3 37 37 H 0.97004 * 120.00059 * 0.02562 * 6 5 4 38 38 H 1.08002 * 125.99112 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.47122 * 65.00119 * 13 12 11 40 40 H 1.09001 * 109.46898 * 185.00302 * 13 12 11 41 41 H 1.08998 * 109.46598 * 60.00080 * 14 13 12 42 42 H 1.09001 * 109.46564 * 180.02562 * 14 13 12 43 43 H 1.08995 * 109.47130 * 300.00016 * 14 13 12 44 44 H 1.08000 * 126.29157 * 180.02562 * 15 12 11 45 45 H 1.08997 * 109.47492 * 186.04833 * 16 3 2 46 46 H 1.09003 * 109.47211 * 306.04443 * 16 3 2 47 47 H 0.97002 * 119.99976 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99902 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8829 1.9917 1.3308 5 6 1.9279 3.5158 1.2036 6 7 1.6698 4.1228 2.5116 7 6 1.6547 5.4643 2.6408 8 8 1.8601 6.1707 1.6725 9 6 1.3889 6.0753 3.9560 10 6 1.1281 5.3882 5.1626 11 7 0.9478 6.2757 6.1016 12 7 1.0734 7.5542 5.5468 13 6 0.9346 8.8195 6.2721 14 6 -0.4189 8.8529 6.9849 15 6 1.3424 7.4259 4.2377 16 6 3.4103 1.4516 -0.4686 17 6 3.4712 1.0497 -1.9197 18 8 2.4560 0.7388 -2.5061 19 7 4.6536 1.0368 -2.5664 20 6 4.7090 0.6717 -3.8867 21 1 3.8049 0.3948 -4.4087 22 6 5.9280 0.6588 -4.5534 23 7 7.0279 0.9962 -3.9183 24 14 6.0033 0.1620 -6.3526 25 1 5.8314 1.3651 -7.2059 26 1 7.3193 -0.4639 -6.6386 27 1 4.9192 -0.8102 -6.6435 28 1 -0.3633 0.5913 -0.8405 29 1 -0.3634 -1.0236 -0.0919 30 1 -0.3634 0.4322 0.9323 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7004 1.6562 1.9689 34 1 0.9319 1.6917 1.7709 35 1 1.1678 3.8437 0.4945 36 1 2.9119 3.8218 0.8487 37 1 1.5062 3.5593 3.2841 38 1 1.0873 4.3161 5.2865 39 1 1.7346 8.9065 7.0072 40 1 0.9954 9.6500 5.5688 41 1 -0.4797 8.0224 7.6882 42 1 -0.5223 9.7945 7.5242 43 1 -1.2189 8.7659 6.2498 44 1 1.4948 8.2312 3.5345 45 1 3.7827 2.4700 -0.3576 46 1 4.0258 0.7733 0.1224 47 1 5.4655 1.2858 -2.0976 48 1 7.8789 0.9868 -4.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691012073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:26 Heat of formation + Delta-G solvation = -18.443679 kcal Electronic energy + Delta-G solvation = -28159.022005 eV Core-core repulsion = 24056.749765 eV Total energy + Delta-G solvation = -4102.272239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35762 -40.56306 -40.09765 -38.28232 -35.99426 -35.63300 -35.34706 -33.28284 -32.14154 -31.55910 -31.09376 -29.84569 -27.73742 -26.04123 -24.97348 -24.16106 -23.09353 -22.23670 -21.58595 -21.05260 -20.77229 -19.84041 -18.92138 -17.88547 -17.13386 -16.98606 -16.86856 -16.61594 -16.35667 -16.07864 -16.00216 -15.59267 -15.40215 -15.34824 -15.11016 -14.83132 -14.42996 -14.26401 -13.98656 -13.81463 -13.63206 -13.40770 -13.36354 -12.98227 -12.96830 -12.79318 -12.62954 -12.52372 -12.46690 -12.39592 -12.12383 -11.98310 -11.89688 -11.72064 -11.38312 -10.94573 -10.58482 -10.23178 -10.14813 -9.96820 -9.62295 -9.19176 -8.44253 -5.92515 0.54215 1.18830 1.38946 1.39816 1.42133 1.54905 2.08968 2.15735 2.32094 2.49170 2.93363 3.22924 3.41046 3.49166 3.79707 3.92446 4.02256 4.07015 4.10378 4.14374 4.21215 4.31092 4.36013 4.42423 4.43836 4.51006 4.60861 4.63085 4.72995 4.76020 4.80753 4.88089 4.89394 4.96821 5.11773 5.21648 5.25933 5.42211 5.43085 5.45581 5.49798 5.88346 5.92819 6.12298 6.25536 6.50894 6.63481 6.68001 7.15785 7.33995 7.59793 8.15788 8.73286 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.001845 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.576299 B =15172.405259 C =16250.690789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.053 3.947 5 C 0.131 3.869 6 N -0.708 5.708 7 C 0.592 3.408 8 O -0.597 6.597 9 C -0.316 4.316 10 C 0.088 3.912 11 N -0.320 5.320 12 N -0.358 5.358 13 C 0.115 3.885 14 C -0.161 4.161 15 C 0.129 3.871 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.416 0.584 38 H 0.219 0.781 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.202 0.798 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 11.663 26.343 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.259 5.259 4 C -0.075 4.075 5 C 0.007 3.993 6 N -0.361 5.361 7 C 0.381 3.619 8 O -0.479 6.479 9 C -0.331 4.331 10 C -0.100 4.100 11 N -0.140 5.140 12 N -0.136 5.136 13 C -0.004 4.004 14 C -0.218 4.218 15 C -0.024 4.024 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.497 6.497 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.219 0.781 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.937 12.532 26.241 31.435 hybrid contribution 1.336 -0.873 -1.103 1.940 sum -10.601 11.659 25.138 29.669 Atomic orbital electron populations 1.21636 0.93821 1.01630 1.01859 1.22092 0.97192 0.87568 1.00474 1.61353 1.18752 1.20195 1.25640 1.22262 1.03763 0.92266 0.89167 1.21089 1.00765 0.92970 0.84515 1.45440 1.72647 1.06026 1.11946 1.17566 0.75238 0.82030 0.87059 1.90780 1.52624 1.62865 1.41653 1.20182 1.24370 0.93820 0.94701 1.24507 0.95758 1.01134 0.88586 1.77102 1.25410 0.88166 1.23299 1.48973 1.51397 1.07047 1.06219 1.22241 1.00491 0.79923 0.97766 1.22020 0.94954 1.04042 1.00808 1.23324 0.93993 0.98426 0.86668 1.21781 0.90915 1.02880 0.91966 1.20776 0.83313 0.82891 0.90156 1.90480 1.35170 1.54185 1.69826 1.41949 1.08298 1.60296 1.10883 1.19657 0.94887 1.43928 0.87588 0.90310 1.26027 0.94109 0.96986 1.04255 1.69677 0.99082 1.48567 1.38956 0.84933 0.77816 0.78477 0.77126 1.19881 1.19523 1.19700 0.94261 0.91628 0.90984 0.92894 0.93115 0.91786 0.87705 0.92804 0.93072 0.74708 0.76475 0.88178 0.85532 0.92594 0.88115 0.92898 0.78110 0.88061 0.91058 0.77160 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.96 71.98 0.72 -2.70 16 2 C 0.05 1.63 5.18 86.30 0.45 2.08 16 3 N -0.53 -16.63 4.10 -900.80 -3.69 -20.32 16 4 C 0.05 1.12 4.92 86.30 0.42 1.55 16 5 C 0.13 3.25 5.70 86.38 0.49 3.74 16 6 N -0.71 -13.72 5.55 -466.39 -2.59 -16.31 16 7 C 0.59 14.65 7.81 86.67 0.68 15.33 16 8 O -0.60 -20.50 16.90 -4.04 -0.07 -20.57 16 9 C -0.32 -6.02 6.13 -20.15 -0.12 -6.14 16 10 C 0.09 1.30 11.50 85.65 0.99 2.28 16 11 N -0.32 -5.47 12.33 -56.28 -0.69 -6.16 16 12 N -0.36 -5.02 3.65 -346.29 -1.26 -6.29 16 13 C 0.11 0.72 7.21 86.38 0.62 1.34 16 14 C -0.16 -0.99 10.09 71.98 0.73 -0.26 16 15 C 0.13 2.09 11.25 84.28 0.95 3.04 16 16 C 0.06 1.95 5.27 85.56 0.45 2.40 16 17 C 0.44 21.38 7.29 87.66 0.64 22.01 16 18 O -0.61 -33.99 14.12 -3.05 -0.04 -34.03 16 19 N -0.58 -30.27 5.29 -306.98 -1.62 -31.90 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.77 13.05 21.66 0.28 -50.48 16 24 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.43 6.91 -2.39 -0.02 1.41 16 31 H 0.05 2.08 5.85 -2.38 -0.01 2.07 16 32 H 0.05 1.24 8.00 -2.38 -0.02 1.22 16 33 H 0.06 1.10 8.00 -2.39 -0.02 1.08 16 34 H 0.10 1.73 6.58 -2.39 -0.02 1.72 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.46 6.95 -2.39 -0.02 1.45 16 37 H 0.42 4.68 7.43 -92.71 -0.69 3.99 16 38 H 0.22 1.50 7.50 -2.91 -0.02 1.48 16 39 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.13 0.13 8.06 -2.39 -0.02 0.11 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.10 3.33 6.71 -2.39 -0.02 3.31 16 46 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 47 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16 48 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -81.64 401.89 0.20 -81.44 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.43 Total: 32.68 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 8.29 Total: 26.01 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -9.58 Total: -131.46 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -0.11 Total: -54.60 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -81.64 0.20 -81.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691012073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.995 kcal (2) G-P(sol) polarization free energy of solvation -81.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds