Wall clock time and date at job start Tue Mar 31 2020 20:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47238 * 2 1 4 4 N 1.28511 * 124.44462 * 269.97808 * 3 2 1 5 5 C 1.31143 * 109.05960 * 179.73443 * 4 3 2 6 6 C 1.40928 * 105.77209 * 0.43251 * 5 4 3 7 7 C 1.47795 * 127.23393 * 179.83858 * 6 5 4 8 8 O 1.21560 * 120.00175 * 5.11898 * 7 6 5 9 9 N 1.34773 * 120.00039 * 185.11385 * 7 6 5 10 10 C 1.46925 * 120.63210 * 174.79786 * 9 7 6 11 11 C 1.53194 * 108.77607 * 233.59080 * 10 9 7 12 12 C 1.53042 * 109.31134 * 305.36270 * 11 10 9 13 13 C 1.53358 * 109.60707 * 61.37394 * 12 11 10 14 14 H 1.09010 * 109.46960 * 58.55127 * 13 12 11 15 15 N 1.46502 * 109.68379 * 178.74304 * 13 12 11 16 16 C 1.36940 * 119.99498 * 59.75567 * 15 13 12 17 17 H 1.07994 * 120.00006 * 321.57843 * 16 15 13 18 18 C 1.38817 * 119.99722 * 141.58453 * 16 15 13 19 19 N 1.31613 * 119.99912 * 339.70611 * 18 16 15 20 20 Si 1.86795 * 119.99996 * 159.71159 * 18 16 15 21 21 H 1.48499 * 109.47203 * 59.99401 * 20 18 16 22 22 H 1.48497 * 109.47219 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46896 * 299.99848 * 20 18 16 24 24 C 1.46496 * 120.00203 * 239.75214 * 15 13 12 25 25 C 1.53000 * 109.47151 * 84.47323 * 24 15 13 26 26 O 1.42899 * 109.47172 * 64.99990 * 25 24 15 27 27 C 1.46929 * 120.63105 * 354.78078 * 9 7 6 28 28 N 1.28593 * 124.44153 * 90.00370 * 3 2 1 29 29 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46788 * 299.99930 * 1 2 3 31 31 H 1.08997 * 109.47064 * 59.99492 * 1 2 3 32 32 H 1.09004 * 109.46788 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47064 * 120.00508 * 2 1 3 34 34 H 1.07998 * 127.11285 * 180.28990 * 5 4 3 35 35 H 1.08999 * 109.58711 * 353.37596 * 10 9 7 36 36 H 1.08993 * 109.58825 * 113.66189 * 10 9 7 37 37 H 1.09001 * 109.49664 * 65.31162 * 11 10 9 38 38 H 1.08997 * 109.50331 * 185.38032 * 11 10 9 39 39 H 1.09008 * 109.46126 * 181.38507 * 12 11 10 40 40 H 1.08994 * 109.46264 * 301.36189 * 12 11 10 41 41 H 0.96998 * 119.99975 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47193 * 204.47783 * 24 15 13 43 43 H 1.09007 * 109.47232 * 324.47235 * 24 15 13 44 44 H 1.08997 * 109.46957 * 184.99934 * 25 24 15 45 45 H 1.09004 * 109.46902 * 304.99955 * 25 24 15 46 46 H 0.96695 * 114.00277 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.58614 * 246.19965 * 27 9 7 48 48 H 1.09003 * 109.58527 * 6.47275 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0663 -1.0598 5 6 2.6770 3.2604 -0.7119 6 6 2.6858 3.2674 0.6974 7 6 3.0803 4.3824 1.5836 8 8 3.3583 5.4667 1.1094 9 7 3.1317 4.1972 2.9176 10 6 3.6303 5.2591 3.8022 11 6 4.7454 4.6850 4.6818 12 6 4.2242 3.4479 5.4167 13 6 3.8143 2.3782 4.3970 14 1 4.6719 2.1215 3.7751 15 7 3.3431 1.1819 5.0992 16 6 2.2692 1.2630 5.9450 17 1 2.1437 2.1298 6.5768 18 6 1.3420 0.2309 5.9904 19 7 1.2478 -0.6137 4.9854 20 14 0.2279 0.0409 7.4777 21 1 -0.5925 1.2677 7.6416 22 1 -0.6654 -1.1289 7.2808 23 1 1.0558 -0.1669 8.6929 24 6 4.0206 -0.1010 4.8965 25 6 5.2285 -0.1931 5.8311 26 8 4.7806 -0.2124 7.1879 27 6 2.6898 2.9296 3.5149 28 7 2.2609 2.0668 1.0605 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9573 4.0700 -1.3694 35 1 4.0240 6.0796 3.2023 36 1 2.8174 5.6230 4.4304 37 1 5.5943 4.4064 4.0573 38 1 5.0587 5.4350 5.4080 39 1 5.0082 3.0517 6.0621 40 1 3.3599 3.7221 6.0215 41 1 0.6002 -1.3351 5.0173 42 1 3.3296 -0.9153 5.1144 43 1 4.3553 -0.1757 3.8618 44 1 5.7834 -1.1069 5.6186 45 1 5.8758 0.6698 5.6744 46 1 5.4948 -0.2703 7.8372 47 1 1.8007 3.1019 4.1214 48 1 2.4603 2.2140 2.7254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691524154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:43 Heat of formation + Delta-G solvation = 42.936301 kcal Electronic energy + Delta-G solvation = -31586.505422 eV Core-core repulsion = 27486.894818 eV Total energy + Delta-G solvation = -4099.610604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.70055 -41.04370 -39.00857 -37.63986 -36.12633 -35.80236 -34.31307 -33.48107 -32.82217 -31.42838 -31.01435 -28.96229 -27.12799 -25.85604 -25.49498 -24.65719 -23.56627 -22.48228 -22.13222 -21.53724 -20.30341 -18.56016 -18.20595 -18.12674 -17.96414 -17.71757 -17.01293 -16.64234 -16.09567 -16.01613 -15.87874 -15.43633 -15.35841 -15.06718 -14.95537 -14.63872 -14.20561 -14.02509 -13.93494 -13.64955 -13.43561 -13.22531 -13.09829 -13.00551 -12.86203 -12.73057 -12.46331 -12.31998 -12.26199 -12.12974 -11.88154 -11.73709 -11.55052 -11.50369 -11.36912 -11.29170 -10.82275 -10.62262 -10.48582 -10.32040 -9.63644 -8.38485 -7.69871 -5.26078 0.23969 0.92547 1.18933 1.48183 1.51459 1.57661 1.98374 2.16007 2.59892 2.88859 3.40950 3.44794 3.72905 3.85461 3.93286 3.96495 4.01594 4.07899 4.12005 4.23703 4.26174 4.37720 4.51111 4.57571 4.60741 4.63460 4.66454 4.73649 4.75394 4.84733 4.92664 4.98725 5.02396 5.06534 5.09128 5.12805 5.14260 5.22981 5.44203 5.53920 5.60439 5.78477 5.84502 5.93394 6.32983 6.60655 6.94379 7.19068 7.21201 7.32599 7.98620 8.51388 9.27795 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.005200 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.795032 B = 5383.402276 C = 6863.166088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.135 5.135 4 N -0.293 5.293 5 C 0.032 3.968 6 C -0.070 4.070 7 C 0.604 3.396 8 O -0.562 6.562 9 N -0.591 5.591 10 C 0.110 3.890 11 C -0.117 4.117 12 C -0.119 4.119 13 C 0.171 3.829 14 H 0.047 0.953 15 N -0.573 5.573 16 C -0.230 4.230 17 H 0.043 0.957 18 C -0.022 4.022 19 N -0.908 5.908 20 Si 0.938 3.062 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.289 1.289 24 C 0.147 3.853 25 C 0.068 3.932 26 O -0.573 6.573 27 C 0.081 3.919 28 N -0.248 5.248 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.231 0.769 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.246 0.754 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.034 0.966 46 H 0.374 0.626 47 H 0.043 0.957 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.753 2.566 -8.068 10.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.005 3.995 3 N -0.039 5.039 4 N -0.133 5.133 5 C -0.151 4.151 6 C -0.231 4.231 7 C 0.391 3.609 8 O -0.441 6.441 9 N -0.322 5.322 10 C -0.012 4.012 11 C -0.156 4.156 12 C -0.158 4.158 13 C 0.063 3.937 14 H 0.065 0.935 15 N -0.293 5.293 16 C -0.361 4.361 17 H 0.061 0.939 18 C -0.219 4.219 19 N -0.553 5.553 20 Si 0.768 3.232 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.021 3.979 25 C -0.012 4.012 26 O -0.378 6.378 27 C -0.043 4.043 28 N -0.096 5.096 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.220 0.780 47 H 0.062 0.938 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.739 1.723 -8.646 10.009 hybrid contribution -0.056 0.355 1.397 1.442 sum 4.683 2.078 -7.250 8.877 Atomic orbital electron populations 1.22093 0.92228 1.05259 1.02181 1.22482 0.96881 0.72772 1.07332 1.48943 1.41902 1.14262 0.98797 1.73935 1.17941 1.05510 1.15866 1.25159 1.01246 0.95718 0.92934 1.23168 1.10735 0.93650 0.95551 1.16912 0.77167 0.85328 0.81543 1.90717 1.52552 1.25271 1.75560 1.48193 1.61562 1.17251 1.05150 1.21797 0.97315 0.89709 0.92376 1.21843 0.97195 0.97779 0.98774 1.21908 1.00102 0.95488 0.98308 1.20726 0.93571 0.87807 0.91567 0.93512 1.43676 1.32631 1.03728 1.49290 1.18721 0.99609 1.04503 1.13224 0.93899 1.25479 0.97991 1.00326 0.98125 1.70058 1.36943 1.18772 1.29482 0.85831 0.78790 0.76616 0.81944 1.21024 1.22223 1.21587 1.20879 0.92658 0.90693 0.93704 1.22883 0.97257 0.97933 0.83149 1.86763 1.37326 1.97323 1.16404 1.23074 0.97655 0.84192 0.99424 1.74431 1.15145 1.04825 1.15193 0.87032 0.93987 0.91278 0.84220 0.87363 0.75307 0.88658 0.91048 0.91695 0.88322 0.92625 0.93407 0.94447 0.91506 0.94298 0.93738 0.94748 0.77956 0.93831 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.12 2.82 7.24 86.38 0.63 3.45 16 3 N -0.14 -4.07 3.94 -187.49 -0.74 -4.81 16 4 N -0.29 -8.38 12.01 -56.16 -0.67 -9.06 16 5 C 0.03 0.92 12.05 85.46 1.03 1.95 16 6 C -0.07 -2.40 6.95 42.24 0.29 -2.10 16 7 C 0.60 21.75 7.70 86.77 0.67 22.42 16 8 O -0.56 -21.12 16.39 -3.90 -0.06 -21.18 16 9 N -0.59 -20.86 2.97 -822.39 -2.45 -23.30 16 10 C 0.11 3.24 6.42 86.36 0.55 3.79 16 11 C -0.12 -3.17 6.08 30.67 0.19 -2.98 16 12 C -0.12 -4.09 5.12 30.73 0.16 -3.93 16 13 C 0.17 6.77 2.80 45.17 0.13 6.90 16 14 H 0.05 1.83 7.87 -2.38 -0.02 1.81 16 15 N -0.57 -26.32 2.32 -677.01 -1.57 -27.90 16 16 C -0.23 -11.93 7.90 84.03 0.66 -11.26 16 17 H 0.04 2.31 6.90 -2.91 -0.02 2.29 16 18 C -0.02 -1.17 4.92 84.86 0.42 -0.75 16 19 N -0.91 -49.61 11.55 21.65 0.25 -49.36 16 20 Si 0.94 44.82 29.60 68.60 2.03 46.85 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 C 0.15 6.49 5.56 86.38 0.48 6.97 16 25 C 0.07 2.46 7.39 71.98 0.53 2.99 16 26 O -0.57 -22.49 13.40 -148.98 -2.00 -24.48 16 27 C 0.08 3.28 5.66 86.36 0.49 3.77 16 28 N -0.25 -8.86 8.50 -48.17 -0.41 -9.27 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.14 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.23 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.10 2.68 7.04 -2.39 -0.02 2.66 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.05 1.82 7.07 -2.39 -0.02 1.80 16 41 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 42 H 0.07 3.46 5.62 -2.39 -0.01 3.44 16 43 H 0.04 1.63 8.04 -2.38 -0.02 1.61 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 46 H 0.37 10.29 9.12 -74.06 -0.68 9.62 16 47 H 0.04 2.01 7.50 -2.39 -0.02 1.99 16 48 H 0.13 5.40 3.73 -76.73 -0.29 5.11 16 Total: -1.00 -67.41 386.85 1.37 -66.04 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.03 Total: 27.95 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 6.96 Total: 28.53 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.59 Total: -123.70 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.06 Total: -45.67 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.41 1.37 -66.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691524154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.978 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds