Wall clock time and date at job start Tue Mar 31 2020 20:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47186 * 2 1 4 4 N 1.28518 * 124.44177 * 90.02406 * 3 2 1 5 5 C 1.31129 * 109.05869 * 179.97438 * 4 3 2 6 6 C 1.40922 * 105.77456 * 0.22847 * 5 4 3 7 7 C 1.47809 * 127.23852 * 179.77427 * 6 5 4 8 8 O 1.21561 * 119.99805 * 7.46754 * 7 6 5 9 9 N 1.34771 * 120.00175 * 187.47233 * 7 6 5 10 10 C 1.46927 * 120.63202 * 5.68057 * 9 7 6 11 11 C 1.53618 * 108.54569 * 126.36627 * 10 9 7 12 12 C 1.53045 * 109.24030 * 54.85629 * 11 10 9 13 13 C 1.53031 * 109.53843 * 298.51129 * 12 11 10 14 14 H 1.09008 * 109.49764 * 301.41163 * 13 12 11 15 15 N 1.46506 * 109.52311 * 181.33254 * 13 12 11 16 16 C 1.36925 * 119.99920 * 300.14483 * 15 13 12 17 17 H 1.08005 * 120.00532 * 321.27285 * 16 15 13 18 18 C 1.38816 * 120.00026 * 141.27691 * 16 15 13 19 19 N 1.31622 * 119.99898 * 169.61277 * 18 16 15 20 20 Si 1.86797 * 119.99998 * 349.61004 * 18 16 15 21 21 H 1.48498 * 109.46955 * 91.04482 * 20 18 16 22 22 H 1.48499 * 109.47068 * 211.04935 * 20 18 16 23 23 H 1.48501 * 109.47007 * 331.04750 * 20 18 16 24 24 C 1.46498 * 119.99999 * 120.14751 * 15 13 12 25 25 C 1.52999 * 109.47341 * 83.54138 * 24 15 13 26 26 O 1.42897 * 109.47187 * 63.69979 * 25 24 15 27 27 C 1.46928 * 120.63264 * 185.95636 * 9 7 6 28 28 N 1.28587 * 124.44458 * 270.00320 * 3 2 1 29 29 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46981 * 299.99821 * 1 2 3 31 31 H 1.08991 * 109.47245 * 59.99947 * 1 2 3 32 32 H 1.08998 * 109.47183 * 240.00270 * 2 1 3 33 33 H 1.09001 * 109.47611 * 119.99635 * 2 1 3 34 34 H 1.08004 * 127.11312 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58955 * 246.20406 * 10 9 7 36 36 H 1.09000 * 109.58422 * 6.62391 * 10 9 7 37 37 H 1.09001 * 109.63980 * 294.86530 * 11 10 9 38 38 H 1.09007 * 109.46194 * 174.74234 * 11 10 9 39 39 H 1.09008 * 109.45859 * 178.48642 * 12 11 10 40 40 H 1.09001 * 109.45503 * 58.53539 * 12 11 10 41 41 H 0.97003 * 119.99888 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.47313 * 203.54633 * 24 15 13 43 43 H 1.09011 * 109.47010 * 323.54580 * 24 15 13 44 44 H 1.09005 * 109.47367 * 183.70618 * 25 24 15 45 45 H 1.09002 * 109.47329 * 303.70259 * 25 24 15 46 46 H 0.96696 * 114.00123 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.58179 * 353.37676 * 27 9 7 48 48 H 1.08998 * 109.58241 * 113.79626 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2611 2.0664 1.0599 5 6 2.6829 3.2583 0.7120 6 6 2.6808 3.2692 -0.6971 7 6 3.0689 4.3866 -1.5835 8 8 3.5680 5.3903 -1.1132 9 7 2.8695 4.2926 -2.9131 10 6 2.1560 3.1419 -3.4836 11 6 1.0024 3.6644 -4.3530 12 6 1.5572 4.6389 -5.3946 13 6 2.2044 5.8311 -4.6865 14 1 1.4651 6.3248 -4.0557 15 7 2.7073 6.7790 -5.6840 16 6 3.6503 6.3803 -6.5931 17 1 4.4475 5.7180 -6.2891 18 6 3.5819 6.8272 -7.9055 19 7 4.5891 6.6159 -8.7261 20 14 2.0603 7.7284 -8.5072 21 1 2.2374 9.1887 -8.3042 22 1 1.8591 7.4501 -9.9519 23 1 0.8749 7.2627 -7.7436 24 6 2.2011 8.1536 -5.7088 25 6 2.9673 8.9978 -4.6884 26 8 4.3439 9.0673 -5.0656 27 6 3.3668 5.3359 -3.8202 28 7 2.2607 2.0670 -1.0604 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.9685 4.0660 1.3696 35 1 2.8405 2.5538 -4.0948 36 1 1.7580 2.5234 -2.6791 37 1 0.2744 4.1785 -3.7254 38 1 0.5204 2.8274 -4.8582 39 1 0.7453 4.9913 -6.0309 40 1 2.3030 4.1309 -6.0060 41 1 4.5412 6.9279 -9.6433 42 1 2.3391 8.5737 -6.7050 43 1 1.1403 8.1547 -5.4578 44 1 2.5471 10.0031 -4.6598 45 1 2.8835 8.5407 -3.7024 46 1 4.8913 9.5879 -4.4619 47 1 3.7679 6.1655 -3.2380 48 1 4.1481 4.9232 -4.4583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691524155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:47 Heat of formation + Delta-G solvation = 74.648036 kcal Electronic energy + Delta-G solvation = -30774.253018 eV Core-core repulsion = 26676.017539 eV Total energy + Delta-G solvation = -4098.235480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.84063 -39.76930 -37.62171 -36.31619 -35.17578 -34.74809 -33.01721 -32.01507 -31.44282 -30.78433 -29.87807 -27.56453 -25.99938 -24.67682 -24.16559 -23.29524 -22.30952 -21.75219 -21.24534 -19.92882 -19.02836 -17.67022 -16.97754 -16.82701 -16.68250 -16.39142 -15.70359 -15.37465 -15.25691 -14.92305 -14.58183 -14.33423 -13.99708 -13.79050 -13.49726 -13.22399 -13.12323 -13.01175 -12.69009 -12.56311 -12.44845 -12.31765 -12.01781 -11.92603 -11.84910 -11.47844 -11.18757 -11.04805 -10.73973 -10.66198 -10.49846 -10.30472 -10.10550 -10.05026 -9.81118 -9.60188 -9.56128 -9.45545 -9.08761 -8.55874 -8.26146 -6.75788 -5.82119 -3.32167 1.19562 1.82600 1.89211 3.13752 3.32300 3.36253 3.47856 3.52383 3.75202 4.34715 4.36264 4.59522 4.63241 4.68064 4.83499 4.87588 5.04158 5.11231 5.19745 5.32082 5.32589 5.47284 5.49020 5.52439 5.55749 5.70723 5.71852 5.88416 5.92862 5.96021 5.99728 6.09946 6.18234 6.25270 6.26675 6.37248 6.47523 6.51300 6.61281 6.66213 6.78948 6.96211 7.08052 7.61014 7.95448 8.16036 8.29012 8.44762 8.51840 9.03682 9.81820 10.17292 11.33322 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003191 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.274003 B = 8771.354761 C = 9564.800240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.147 5.147 4 N -0.291 5.291 5 C 0.032 3.968 6 C -0.034 4.034 7 C 0.600 3.400 8 O -0.535 6.535 9 N -0.588 5.588 10 C 0.088 3.912 11 C -0.130 4.130 12 C -0.127 4.127 13 C 0.173 3.827 14 H 0.053 0.947 15 N -0.592 5.592 16 C -0.245 4.245 17 H 0.079 0.921 18 C 0.035 3.965 19 N -0.912 5.912 20 Si 0.894 3.106 21 H -0.288 1.288 22 H -0.308 1.308 23 H -0.273 1.273 24 C 0.129 3.871 25 C 0.059 3.941 26 O -0.539 6.539 27 C 0.104 3.896 28 N -0.248 5.248 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.207 0.793 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.356 0.644 47 H 0.087 0.913 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -11.726 17.455 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.050 5.050 4 N -0.131 5.131 5 C -0.152 4.152 6 C -0.197 4.197 7 C 0.384 3.616 8 O -0.410 6.410 9 N -0.320 5.320 10 C -0.036 4.036 11 C -0.169 4.169 12 C -0.167 4.167 13 C 0.065 3.935 14 H 0.071 0.929 15 N -0.314 5.314 16 C -0.374 4.374 17 H 0.097 0.903 18 C -0.164 4.164 19 N -0.555 5.555 20 Si 0.728 3.272 21 H -0.217 1.217 22 H -0.237 1.237 23 H -0.198 1.198 24 C 0.003 3.997 25 C -0.022 4.022 26 O -0.341 6.341 27 C -0.019 4.019 28 N -0.096 5.096 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.199 0.801 47 H 0.105 0.895 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.831 -12.840 17.004 23.466 hybrid contribution -0.300 1.799 -0.020 1.824 sum -10.131 -11.040 16.984 22.649 Atomic orbital electron populations 1.22194 0.92885 1.04054 1.03871 1.22093 0.96213 0.74307 1.06120 1.48447 1.43646 1.13425 0.99441 1.73971 1.17722 1.05629 1.15744 1.24811 1.01477 0.95167 0.93719 1.23246 1.08179 0.93412 0.94834 1.16759 0.79009 0.84361 0.81421 1.90795 1.45380 1.30020 1.74818 1.48063 1.54820 1.23862 1.05205 1.22500 0.94195 0.87820 0.99059 1.22007 0.97236 0.99635 0.98011 1.21966 1.00741 0.96539 0.97429 1.20555 0.92717 0.90254 0.89980 0.92920 1.44001 1.47478 1.04022 1.35886 1.18586 1.02796 1.28511 0.87481 0.90308 1.25370 0.96664 0.98494 0.95873 1.69759 1.30411 1.49224 1.06075 0.86738 0.85248 0.78888 0.76342 1.21728 1.23685 1.19809 1.21437 0.94294 0.85932 0.98003 1.22909 0.83695 0.97095 0.98453 1.86863 1.18918 1.75465 1.52842 1.22376 0.98329 0.89973 0.91197 1.74334 1.15804 1.04771 1.14658 0.89442 0.91368 0.91166 0.87034 0.87182 0.77649 0.91332 0.86836 0.92481 0.91293 0.92270 0.90487 0.92973 0.91817 0.93105 0.95795 0.94693 0.80057 0.89454 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 37.16 0.38 -0.40 16 2 C 0.13 0.73 7.24 -4.04 -0.03 0.70 16 3 N -0.15 -1.51 3.94 -10.61 -0.04 -1.55 16 4 N -0.29 -3.32 12.01 30.90 0.37 -2.95 16 5 C 0.03 0.38 12.05 -16.84 -0.20 0.18 16 6 C -0.03 -0.48 6.87 -82.68 -0.57 -1.04 16 7 C 0.60 10.01 7.70 -12.35 -0.10 9.92 16 8 O -0.53 -10.30 16.38 5.31 0.09 -10.21 16 9 N -0.59 -9.69 2.97 -173.64 -0.51 -10.21 16 10 C 0.09 1.22 6.18 -3.49 -0.02 1.20 16 11 C -0.13 -1.80 6.10 -26.39 -0.16 -1.96 16 12 C -0.13 -2.28 5.11 -26.69 -0.14 -2.41 16 13 C 0.17 3.37 2.78 -67.82 -0.19 3.19 16 14 H 0.05 0.99 7.88 -51.92 -0.41 0.58 16 15 N -0.59 -13.69 2.03 -165.53 -0.34 -14.03 16 16 C -0.24 -6.69 8.57 -15.06 -0.13 -6.82 16 17 H 0.08 2.35 6.91 -52.48 -0.36 1.99 16 18 C 0.04 1.01 5.44 -17.43 -0.09 0.92 16 19 N -0.91 -28.26 13.97 55.49 0.78 -27.49 16 20 Si 0.89 22.79 24.57 -169.99 -4.18 18.61 16 21 H -0.29 -7.31 6.69 56.52 0.38 -6.93 16 22 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 23 H -0.27 -6.60 6.90 56.52 0.39 -6.21 16 24 C 0.13 2.82 4.35 -4.04 -0.02 2.80 16 25 C 0.06 1.14 7.39 37.16 0.27 1.42 16 26 O -0.54 -11.51 13.39 -35.23 -0.47 -11.98 16 27 C 0.10 2.00 5.77 -3.71 -0.02 1.97 16 28 N -0.25 -3.04 8.65 33.42 0.29 -2.75 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.21 2.04 8.06 -52.48 -0.42 1.62 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.44 4.15 -66.52 -0.28 1.17 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.06 1.56 2.76 -51.93 -0.14 1.42 16 43 H 0.05 0.99 8.06 -51.92 -0.42 0.57 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.36 5.62 9.12 45.56 0.42 6.04 16 47 H 0.09 1.82 7.00 -51.93 -0.36 1.45 16 48 H 0.08 1.70 6.81 -51.93 -0.35 1.34 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -35.50 380.68 -5.85 -41.34 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.55 Total: 5.81 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.01 Total: 9.65 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.54 Total: -58.97 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.38 Total: -22.19 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.18 Total: 18.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.50 -5.85 -41.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691524155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.992 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds