Wall clock time and date at job start Tue Mar 31 2020 20:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47186 * 2 1 4 4 N 1.28518 * 124.44177 * 90.02406 * 3 2 1 5 5 C 1.31129 * 109.05869 * 179.97438 * 4 3 2 6 6 C 1.40922 * 105.77456 * 0.22847 * 5 4 3 7 7 C 1.47809 * 127.23852 * 179.77427 * 6 5 4 8 8 O 1.21561 * 119.99805 * 7.46754 * 7 6 5 9 9 N 1.34771 * 120.00175 * 187.47233 * 7 6 5 10 10 C 1.46927 * 120.63202 * 5.68057 * 9 7 6 11 11 C 1.53618 * 108.54569 * 126.36627 * 10 9 7 12 12 C 1.53045 * 109.24030 * 54.85629 * 11 10 9 13 13 C 1.53031 * 109.53843 * 298.51129 * 12 11 10 14 14 H 1.09008 * 109.49764 * 301.41163 * 13 12 11 15 15 N 1.46506 * 109.52311 * 181.33254 * 13 12 11 16 16 C 1.36925 * 119.99920 * 300.14483 * 15 13 12 17 17 H 1.08005 * 120.00532 * 321.27285 * 16 15 13 18 18 C 1.38816 * 120.00026 * 141.27691 * 16 15 13 19 19 N 1.31622 * 119.99898 * 169.61277 * 18 16 15 20 20 Si 1.86797 * 119.99998 * 349.61004 * 18 16 15 21 21 H 1.48498 * 109.46955 * 91.04482 * 20 18 16 22 22 H 1.48499 * 109.47068 * 211.04935 * 20 18 16 23 23 H 1.48501 * 109.47007 * 331.04750 * 20 18 16 24 24 C 1.46498 * 119.99999 * 120.14751 * 15 13 12 25 25 C 1.52999 * 109.47341 * 83.54138 * 24 15 13 26 26 O 1.42897 * 109.47187 * 63.69979 * 25 24 15 27 27 C 1.46928 * 120.63264 * 185.95636 * 9 7 6 28 28 N 1.28587 * 124.44458 * 270.00320 * 3 2 1 29 29 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46981 * 299.99821 * 1 2 3 31 31 H 1.08991 * 109.47245 * 59.99947 * 1 2 3 32 32 H 1.08998 * 109.47183 * 240.00270 * 2 1 3 33 33 H 1.09001 * 109.47611 * 119.99635 * 2 1 3 34 34 H 1.08004 * 127.11312 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58955 * 246.20406 * 10 9 7 36 36 H 1.09000 * 109.58422 * 6.62391 * 10 9 7 37 37 H 1.09001 * 109.63980 * 294.86530 * 11 10 9 38 38 H 1.09007 * 109.46194 * 174.74234 * 11 10 9 39 39 H 1.09008 * 109.45859 * 178.48642 * 12 11 10 40 40 H 1.09001 * 109.45503 * 58.53539 * 12 11 10 41 41 H 0.97003 * 119.99888 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.47313 * 203.54633 * 24 15 13 43 43 H 1.09011 * 109.47010 * 323.54580 * 24 15 13 44 44 H 1.09005 * 109.47367 * 183.70618 * 25 24 15 45 45 H 1.09002 * 109.47329 * 303.70259 * 25 24 15 46 46 H 0.96696 * 114.00123 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.58179 * 353.37676 * 27 9 7 48 48 H 1.08998 * 109.58241 * 113.79626 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2611 2.0664 1.0599 5 6 2.6829 3.2583 0.7120 6 6 2.6808 3.2692 -0.6971 7 6 3.0689 4.3866 -1.5835 8 8 3.5680 5.3903 -1.1132 9 7 2.8695 4.2926 -2.9131 10 6 2.1560 3.1419 -3.4836 11 6 1.0024 3.6644 -4.3530 12 6 1.5572 4.6389 -5.3946 13 6 2.2044 5.8311 -4.6865 14 1 1.4651 6.3248 -4.0557 15 7 2.7073 6.7790 -5.6840 16 6 3.6503 6.3803 -6.5931 17 1 4.4475 5.7180 -6.2891 18 6 3.5819 6.8272 -7.9055 19 7 4.5891 6.6159 -8.7261 20 14 2.0603 7.7284 -8.5072 21 1 2.2374 9.1887 -8.3042 22 1 1.8591 7.4501 -9.9519 23 1 0.8749 7.2627 -7.7436 24 6 2.2011 8.1536 -5.7088 25 6 2.9673 8.9978 -4.6884 26 8 4.3439 9.0673 -5.0656 27 6 3.3668 5.3359 -3.8202 28 7 2.2607 2.0670 -1.0604 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.9685 4.0660 1.3696 35 1 2.8405 2.5538 -4.0948 36 1 1.7580 2.5234 -2.6791 37 1 0.2744 4.1785 -3.7254 38 1 0.5204 2.8274 -4.8582 39 1 0.7453 4.9913 -6.0309 40 1 2.3030 4.1309 -6.0060 41 1 4.5412 6.9279 -9.6433 42 1 2.3391 8.5737 -6.7050 43 1 1.1403 8.1547 -5.4578 44 1 2.5471 10.0031 -4.6598 45 1 2.8835 8.5407 -3.7024 46 1 4.8913 9.5879 -4.4619 47 1 3.7679 6.1655 -3.2380 48 1 4.1481 4.9232 -4.4583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691524155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:46 Heat of formation + Delta-G solvation = 46.634628 kcal Electronic energy + Delta-G solvation = -30775.467771 eV Core-core repulsion = 26676.017539 eV Total energy + Delta-G solvation = -4099.450232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.74939 -41.13565 -39.18664 -37.83375 -36.42061 -35.79696 -34.21476 -33.58038 -33.12903 -31.76873 -31.13273 -29.33742 -27.19243 -25.94031 -25.47149 -24.52412 -23.74054 -22.88595 -22.36852 -21.46516 -20.40195 -18.51804 -18.47897 -18.39283 -18.00786 -17.67044 -17.31314 -16.99885 -16.37227 -16.02827 -15.88234 -15.44704 -15.29208 -15.12445 -14.97456 -14.70208 -14.61857 -14.23195 -13.99376 -13.95214 -13.64917 -13.51988 -13.15081 -13.09342 -12.98026 -12.87256 -12.55814 -12.28882 -12.22307 -12.11829 -11.92613 -11.77577 -11.60929 -11.41038 -11.39824 -11.22935 -11.02179 -10.77491 -10.54784 -10.50867 -9.74858 -8.68045 -8.03438 -5.50296 0.16665 0.87713 1.16681 1.32915 1.41348 1.52152 1.88674 2.10141 2.49023 2.81745 3.14861 3.29861 3.54881 3.66528 3.90388 3.95760 3.99328 4.04410 4.09918 4.18024 4.21038 4.28894 4.36197 4.40725 4.48275 4.55005 4.57613 4.61465 4.71114 4.73818 4.79211 4.80525 4.90965 4.93952 4.98131 5.02415 5.07645 5.15934 5.21183 5.37901 5.44177 5.58175 5.71182 6.05892 6.27672 6.32547 6.90310 7.02257 7.10358 7.14046 7.70455 8.09532 9.15769 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003191 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.274003 B = 8771.354761 C = 9564.800240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.131 5.131 4 N -0.292 5.292 5 C 0.030 3.970 6 C -0.060 4.060 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.590 5.590 10 C 0.088 3.912 11 C -0.118 4.118 12 C -0.122 4.122 13 C 0.172 3.828 14 H 0.071 0.929 15 N -0.603 5.603 16 C -0.215 4.215 17 H 0.038 0.962 18 C -0.028 4.028 19 N -0.966 5.966 20 Si 0.958 3.042 21 H -0.286 1.286 22 H -0.319 1.319 23 H -0.249 1.249 24 C 0.115 3.885 25 C 0.062 3.938 26 O -0.577 6.577 27 C 0.120 3.880 28 N -0.246 5.246 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.221 0.779 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.257 0.743 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.043 0.957 46 H 0.378 0.622 47 H 0.067 0.933 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 -12.997 19.639 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.036 5.036 4 N -0.132 5.132 5 C -0.152 4.152 6 C -0.220 4.220 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.321 5.321 10 C -0.034 4.034 11 C -0.156 4.156 12 C -0.161 4.161 13 C 0.065 3.935 14 H 0.089 0.911 15 N -0.325 5.325 16 C -0.345 4.345 17 H 0.056 0.944 18 C -0.222 4.222 19 N -0.612 5.612 20 Si 0.790 3.210 21 H -0.215 1.215 22 H -0.249 1.249 23 H -0.173 1.173 24 C -0.009 4.009 25 C -0.018 4.018 26 O -0.382 6.382 27 C -0.004 4.004 28 N -0.096 5.096 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.086 0.914 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.885 -14.118 19.253 27.129 hybrid contribution 0.687 2.048 -0.522 2.222 sum -12.198 -12.071 18.731 25.403 Atomic orbital electron populations 1.22178 0.91837 1.05597 1.02783 1.22687 0.97040 0.72125 1.08219 1.49024 1.41558 1.14358 0.98643 1.74007 1.17839 1.05391 1.15971 1.25081 1.01059 0.95863 0.93194 1.22783 1.10757 0.93434 0.95030 1.17062 0.78119 0.84696 0.81423 1.90765 1.46773 1.31612 1.75421 1.48065 1.55063 1.23856 1.05100 1.22674 0.94020 0.87054 0.99635 1.21946 0.97124 0.99618 0.96955 1.21864 0.99739 0.96468 0.98054 1.20713 0.92938 0.90455 0.89371 0.91095 1.44094 1.47005 1.05670 1.35706 1.18338 1.01992 1.26133 0.88045 0.94423 1.26015 0.99433 1.00554 0.96221 1.69923 1.32790 1.52166 1.06341 0.85690 0.82455 0.77723 0.75122 1.21485 1.24899 1.17255 1.21638 0.96544 0.85142 0.97598 1.22865 0.82671 0.98586 0.97692 1.86788 1.20461 1.76459 1.54503 1.21911 0.97590 0.90010 0.90875 1.74184 1.15595 1.04269 1.15506 0.86602 0.92367 0.92250 0.85148 0.85009 0.76260 0.91617 0.84917 0.91224 0.88392 0.92542 0.93312 0.93459 0.94213 0.89850 0.92329 0.93843 0.77500 0.91409 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 71.98 0.74 -0.22 16 2 C 0.12 0.87 7.24 86.38 0.63 1.50 16 3 N -0.13 -2.32 3.94 -187.49 -0.74 -3.06 16 4 N -0.29 -5.97 12.01 -56.16 -0.67 -6.64 16 5 C 0.03 0.69 12.05 85.46 1.03 1.72 16 6 C -0.06 -1.59 6.87 42.24 0.29 -1.30 16 7 C 0.60 19.87 7.70 86.78 0.67 20.54 16 8 O -0.57 -22.11 16.38 -3.91 -0.06 -22.18 16 9 N -0.59 -19.31 2.97 -821.54 -2.44 -21.74 16 10 C 0.09 2.33 6.18 86.51 0.53 2.87 16 11 C -0.12 -2.96 6.10 30.82 0.19 -2.77 16 12 C -0.12 -4.23 5.11 30.62 0.16 -4.08 16 13 C 0.17 6.62 2.78 45.06 0.13 6.75 16 14 H 0.07 2.50 7.88 -2.38 -0.02 2.48 16 15 N -0.60 -27.81 2.03 -677.60 -1.37 -29.18 16 16 C -0.21 -12.15 8.57 84.04 0.72 -11.43 16 17 H 0.04 2.41 6.91 -2.91 -0.02 2.39 16 18 C -0.03 -1.68 5.44 84.86 0.46 -1.22 16 19 N -0.97 -62.57 13.97 21.65 0.30 -62.26 16 20 Si 0.96 47.80 24.57 68.60 1.69 49.49 16 21 H -0.29 -14.03 6.69 99.48 0.67 -13.36 16 22 H -0.32 -16.30 7.11 99.48 0.71 -15.60 16 23 H -0.25 -11.23 6.90 99.48 0.69 -10.54 16 24 C 0.12 4.84 4.35 86.38 0.38 5.22 16 25 C 0.06 2.27 7.39 71.98 0.53 2.80 16 26 O -0.58 -24.50 13.39 -148.98 -1.99 -26.50 16 27 C 0.12 4.74 5.77 86.36 0.50 5.24 16 28 N -0.25 -5.47 8.65 -48.16 -0.42 -5.89 16 29 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.22 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.13 3.05 4.15 -21.27 -0.09 2.96 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.05 1.96 7.70 -2.39 -0.02 1.94 16 41 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.04 1.89 2.76 -2.39 -0.01 1.88 16 43 H 0.08 2.93 8.06 -2.38 -0.02 2.91 16 44 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.38 11.78 9.12 -74.06 -0.68 11.11 16 47 H 0.07 2.92 7.00 -2.39 -0.02 2.90 16 48 H 0.05 2.22 6.81 -2.39 -0.02 2.21 16 Total: -1.00 -80.77 380.68 1.40 -79.37 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.17 Total: 22.99 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 6.94 Total: 25.61 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.34 Total: -128.78 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.06 Total: -48.67 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.69 Total: 49.49 kcal Total: -80.77 1.40 -79.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691524155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.004 kcal (2) G-P(sol) polarization free energy of solvation -80.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds