Wall clock time and date at job start Tue Mar 31 2020 20:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.50695 * 109.47407 * 239.99569 * 2 1 3 5 5 O 1.21283 * 120.00040 * 267.91141 * 4 2 1 6 6 N 1.34780 * 119.99986 * 87.91144 * 4 2 1 7 7 C 1.46931 * 120.62941 * 355.27510 * 6 4 2 8 8 C 1.53189 * 108.77225 * 233.58598 * 7 6 4 9 9 C 1.53036 * 109.34111 * 305.37630 * 8 7 6 10 10 C 1.53042 * 109.53507 * 61.32121 * 9 8 7 11 11 H 1.08997 * 109.49853 * 58.65141 * 10 9 8 12 12 N 1.46507 * 109.49628 * 178.71404 * 10 9 8 13 13 C 1.36936 * 119.99536 * 59.93848 * 12 10 9 14 14 H 1.07996 * 120.00118 * 322.11935 * 13 12 10 15 15 C 1.38817 * 119.99745 * 142.13293 * 13 12 10 16 16 N 1.31616 * 119.99857 * 339.33320 * 15 13 12 17 17 Si 1.86798 * 119.99995 * 159.33932 * 15 13 12 18 18 H 1.48502 * 109.47300 * 89.99736 * 17 15 13 19 19 H 1.48495 * 109.47131 * 209.99752 * 17 15 13 20 20 H 1.48502 * 109.47045 * 329.99661 * 17 15 13 21 21 C 1.46492 * 119.99942 * 239.93431 * 12 10 9 22 22 C 1.52999 * 109.47285 * 82.76165 * 21 12 10 23 23 O 1.42895 * 109.46988 * 294.99977 * 22 21 12 24 24 C 1.46925 * 120.63078 * 175.24936 * 6 4 2 25 25 N 1.46501 * 109.47064 * 119.99715 * 2 1 3 26 26 C 1.34434 * 126.82460 * 35.00020 * 25 2 1 27 27 N 1.30826 * 108.07825 * 179.97438 * 26 25 2 28 28 C 1.33236 * 109.83122 * 359.97438 * 27 26 25 29 29 N 1.30717 * 108.94823 * 359.76153 * 28 27 26 30 30 H 1.08998 * 109.46691 * 60.68621 * 1 2 3 31 31 H 1.09004 * 109.46847 * 180.68037 * 1 2 3 32 32 H 1.08993 * 109.47229 * 300.68042 * 1 2 3 33 33 H 1.08998 * 109.58279 * 353.37701 * 7 6 4 34 34 H 1.09005 * 109.58149 * 113.79697 * 7 6 4 35 35 H 1.08999 * 109.49911 * 65.32064 * 8 7 6 36 36 H 1.09008 * 109.49086 * 185.38125 * 8 7 6 37 37 H 1.08999 * 109.43394 * 301.31739 * 9 8 7 38 38 H 1.08998 * 109.48938 * 181.35613 * 9 8 7 39 39 H 0.97005 * 119.99535 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.47387 * 322.76334 * 21 12 10 41 41 H 1.09003 * 109.46946 * 202.76107 * 21 12 10 42 42 H 1.09000 * 109.46776 * 54.99769 * 22 21 12 43 43 H 1.08999 * 109.47531 * 174.99826 * 22 21 12 44 44 H 0.96702 * 114.00419 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.58868 * 6.63196 * 24 6 4 46 46 H 1.09002 * 109.58819 * 246.20096 * 24 6 4 47 47 H 1.07999 * 125.95640 * 359.92862 * 26 25 2 48 48 H 1.08001 * 125.52533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.2707 -1.8990 -1.1895 6 7 2.2170 -0.0251 -2.3761 7 6 1.8359 1.3907 -2.4712 8 6 0.9107 1.5722 -3.6786 9 6 1.5969 1.0207 -4.9304 10 6 1.8674 -0.4747 -4.7489 11 1 0.9270 -0.9952 -4.5679 12 7 2.4965 -1.0082 -5.9597 13 6 3.6956 -0.5039 -6.3873 14 1 3.8984 0.5533 -6.3009 15 6 4.6504 -1.3516 -6.9321 16 7 4.6039 -2.6428 -6.6813 17 14 6.0014 -0.6597 -8.0209 18 1 7.1698 -0.2869 -7.1836 19 1 6.4109 -1.6852 -9.0137 20 1 5.4974 0.5433 -8.7310 21 6 1.8427 -2.0813 -6.7127 22 6 0.7872 -1.4812 -7.6436 23 8 -0.2491 -0.8807 -6.8643 24 6 2.8035 -0.6795 -3.5536 25 7 2.0183 -0.6906 1.1962 26 6 1.4558 -1.7518 1.8000 27 7 2.1938 -2.0699 2.8324 28 6 3.2315 -1.2387 2.9195 29 7 3.1708 -0.3795 1.9362 30 1 -0.3632 0.5031 -0.8961 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5243 0.8838 33 1 1.3140 1.6904 -1.5625 34 1 2.7294 2.0016 -2.6003 35 1 -0.0209 1.0330 -3.5074 36 1 0.6974 2.6322 -3.8172 37 1 2.5401 1.5440 -5.0873 38 1 0.9506 1.1704 -5.7952 39 1 5.2713 -3.2351 -7.0618 40 1 1.3643 -2.7728 -6.0190 41 1 2.5865 -2.6159 -7.3035 42 1 1.2498 -0.7248 -8.2776 43 1 0.3631 -2.2681 -8.2673 44 1 -0.9541 -0.4787 -7.3902 45 1 2.9199 -1.7457 -3.3591 46 1 3.7758 -0.2373 -3.7710 47 1 0.5520 -2.2537 1.4877 48 1 4.0002 -1.2719 3.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692037044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:01 Heat of formation + Delta-G solvation = 38.894256 kcal Electronic energy + Delta-G solvation = -30963.822478 eV Core-core repulsion = 26864.036598 eV Total energy + Delta-G solvation = -4099.785880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15661 -40.06275 -37.65699 -36.32348 -35.14802 -34.67054 -32.33414 -31.40821 -31.29368 -30.33241 -29.53519 -27.29486 -25.90042 -24.59665 -24.13641 -22.47415 -22.02985 -21.76839 -20.70160 -19.92178 -18.84553 -17.48818 -17.27112 -16.84431 -16.28100 -15.84336 -15.23182 -15.06246 -14.95434 -14.68617 -14.44746 -14.30646 -13.98411 -13.82669 -13.49947 -13.45991 -13.14792 -12.91657 -12.67723 -12.60561 -12.46761 -12.30158 -11.94550 -11.67065 -11.32487 -11.12468 -11.11562 -10.76864 -10.69999 -10.51093 -10.39291 -10.30048 -10.05507 -9.98057 -9.92829 -9.77441 -9.64881 -9.31650 -9.23515 -8.55038 -8.30802 -6.61721 -5.88067 -3.43563 1.55348 2.04679 2.65907 2.96740 3.19820 3.29943 3.38744 3.40229 4.20109 4.28754 4.33502 4.41209 4.48732 4.76130 4.88189 5.07011 5.09389 5.13408 5.17856 5.22758 5.26160 5.36250 5.41636 5.57540 5.69371 5.87535 5.93465 6.07282 6.11553 6.16019 6.21767 6.31302 6.38360 6.40209 6.48361 6.62539 6.68617 6.69693 6.76942 7.01078 7.13312 7.14182 7.48666 7.60877 7.75959 8.04707 8.23901 8.24994 8.44987 9.12256 9.74396 10.35361 11.14184 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003405 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.140433 B = 8221.645255 C = 9060.585799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.125 0.875 4 C 0.500 3.500 5 O -0.528 6.528 6 N -0.596 5.596 7 C 0.102 3.898 8 C -0.129 4.129 9 C -0.123 4.123 10 C 0.178 3.822 11 H 0.057 0.943 12 N -0.570 5.570 13 C -0.263 4.263 14 H 0.061 0.939 15 C 0.014 3.986 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.155 3.845 22 C 0.054 3.946 23 O -0.568 6.568 24 C 0.104 3.896 25 N -0.363 5.363 26 C 0.277 3.723 27 N -0.550 5.550 28 C 0.198 3.802 29 N -0.320 5.320 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.256 0.744 40 H 0.028 0.972 41 H 0.104 0.896 42 H 0.040 0.960 43 H 0.023 0.977 44 H 0.355 0.645 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.215 0.785 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.357 8.504 9.589 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.142 0.858 4 C 0.284 3.716 5 O -0.404 6.404 6 N -0.329 5.329 7 C -0.021 4.021 8 C -0.168 4.168 9 C -0.162 4.162 10 C 0.070 3.930 11 H 0.075 0.925 12 N -0.289 5.289 13 C -0.393 4.393 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.203 1.203 21 C 0.029 3.971 22 C -0.025 4.025 23 O -0.371 6.371 24 C -0.018 4.018 25 N -0.153 5.153 26 C -0.020 4.020 27 N -0.278 5.278 28 C -0.105 4.105 29 N -0.147 5.147 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.199 0.801 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.231 0.769 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.252 7.814 10.057 16.349 hybrid contribution 0.426 0.480 -1.426 1.564 sum -9.826 8.294 8.631 15.486 Atomic orbital electron populations 1.22156 0.90042 1.04802 1.04853 1.21328 0.96613 0.97695 0.81371 0.85767 1.20394 0.79163 0.87668 0.84336 1.90759 1.51052 1.14695 1.83915 1.48305 1.61026 1.11320 1.12284 1.21866 0.99315 0.81898 0.99059 1.21908 0.98505 1.00862 0.95545 1.21907 1.00065 0.98405 0.95828 1.20535 0.93982 0.92541 0.85961 0.92472 1.43666 1.20751 1.41799 1.22662 1.18957 0.91464 0.91477 1.37396 0.92132 1.25222 0.96912 0.95598 1.00926 1.70012 1.35750 1.03139 1.43847 0.86449 0.82137 0.78364 0.80707 1.21218 1.21498 1.20344 1.20980 0.92187 0.89972 0.93993 1.23201 0.88961 0.95327 0.95040 1.86590 1.35770 1.77352 1.37349 1.22490 0.97801 0.98847 0.82660 1.50137 1.18774 1.24718 1.21679 1.25887 0.99158 0.87541 0.89408 1.70568 1.07376 1.28641 1.21177 1.25970 0.97266 0.90229 0.97022 1.78047 1.02689 1.25725 1.08229 0.88753 0.90444 0.90124 0.90810 0.91018 0.91878 0.91356 0.92226 0.91548 0.93383 0.95329 0.87815 0.94135 0.95894 0.80066 0.89589 0.90627 0.76891 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.65 37.16 0.32 -0.92 16 2 C 0.14 1.60 2.90 -69.08 -0.20 1.40 16 3 H 0.12 1.25 6.56 -51.93 -0.34 0.91 16 4 C 0.50 8.11 6.88 -10.99 -0.08 8.04 16 5 O -0.53 -11.00 15.83 5.56 0.09 -10.91 16 6 N -0.60 -9.49 2.97 -172.76 -0.51 -10.01 16 7 C 0.10 1.19 6.08 -3.71 -0.02 1.17 16 8 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 9 C -0.12 -2.04 5.11 -26.69 -0.14 -2.18 16 10 C 0.18 3.56 2.11 -67.80 -0.14 3.41 16 11 H 0.06 1.20 7.48 -51.93 -0.39 0.81 16 12 N -0.57 -13.20 2.37 -165.52 -0.39 -13.59 16 13 C -0.26 -6.64 8.11 -15.06 -0.12 -6.77 16 14 H 0.06 1.53 6.89 -52.49 -0.36 1.17 16 15 C 0.01 0.37 4.90 -17.43 -0.09 0.29 16 16 N -0.89 -24.57 11.56 55.49 0.64 -23.93 16 17 Si 0.89 20.69 29.60 -169.99 -5.03 15.66 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 C 0.16 3.52 5.59 -4.05 -0.02 3.49 16 22 C 0.05 1.01 7.39 37.16 0.27 1.29 16 23 O -0.57 -9.57 12.05 -35.23 -0.42 -10.00 16 24 C 0.10 2.14 5.77 -3.71 -0.02 2.11 16 25 N -0.36 -4.96 3.28 -57.24 -0.19 -5.14 16 26 C 0.28 3.57 11.48 -90.65 -1.04 2.53 16 27 N -0.55 -7.80 11.19 -15.83 -0.18 -7.98 16 28 C 0.20 2.63 13.03 -91.81 -1.20 1.43 16 29 N -0.32 -4.77 12.70 29.29 0.37 -4.40 16 30 H 0.09 0.62 7.45 -51.93 -0.39 0.24 16 31 H 0.08 0.60 7.19 -51.93 -0.37 0.23 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.61 4.97 -51.93 -0.26 0.35 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.06 1.07 7.05 -51.93 -0.37 0.70 16 38 H 0.07 1.16 7.66 -51.93 -0.40 0.76 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.10 2.62 5.63 -51.93 -0.29 2.33 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.36 4.24 9.12 45.56 0.42 4.66 16 45 H 0.09 2.08 7.00 -51.93 -0.36 1.72 16 46 H 0.08 1.69 7.50 -51.93 -0.39 1.30 16 47 H 0.21 2.00 7.30 -52.49 -0.38 1.62 16 48 H 0.22 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -34.09 382.01 -8.90 -42.99 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.40 Total: 7.96 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: -2.63 Total: 13.58 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.26 Total: -65.04 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.34 Total: -20.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.09 -8.90 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.885 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds