Wall clock time and date at job start Tue Mar 31 2020 20:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.50695 * 109.47407 * 239.99569 * 2 1 3 5 5 O 1.21283 * 120.00040 * 267.91141 * 4 2 1 6 6 N 1.34780 * 119.99986 * 87.91144 * 4 2 1 7 7 C 1.46931 * 120.62941 * 355.27510 * 6 4 2 8 8 C 1.53189 * 108.77225 * 233.58598 * 7 6 4 9 9 C 1.53036 * 109.34111 * 305.37630 * 8 7 6 10 10 C 1.53042 * 109.53507 * 61.32121 * 9 8 7 11 11 H 1.08997 * 109.49853 * 58.65141 * 10 9 8 12 12 N 1.46507 * 109.49628 * 178.71404 * 10 9 8 13 13 C 1.36936 * 119.99536 * 59.93848 * 12 10 9 14 14 H 1.07996 * 120.00118 * 322.11935 * 13 12 10 15 15 C 1.38817 * 119.99745 * 142.13293 * 13 12 10 16 16 N 1.31616 * 119.99857 * 339.33320 * 15 13 12 17 17 Si 1.86798 * 119.99995 * 159.33932 * 15 13 12 18 18 H 1.48502 * 109.47300 * 89.99736 * 17 15 13 19 19 H 1.48495 * 109.47131 * 209.99752 * 17 15 13 20 20 H 1.48502 * 109.47045 * 329.99661 * 17 15 13 21 21 C 1.46492 * 119.99942 * 239.93431 * 12 10 9 22 22 C 1.52999 * 109.47285 * 82.76165 * 21 12 10 23 23 O 1.42895 * 109.46988 * 294.99977 * 22 21 12 24 24 C 1.46925 * 120.63078 * 175.24936 * 6 4 2 25 25 N 1.46501 * 109.47064 * 119.99715 * 2 1 3 26 26 C 1.34434 * 126.82460 * 35.00020 * 25 2 1 27 27 N 1.30826 * 108.07825 * 179.97438 * 26 25 2 28 28 C 1.33236 * 109.83122 * 359.97438 * 27 26 25 29 29 N 1.30717 * 108.94823 * 359.76153 * 28 27 26 30 30 H 1.08998 * 109.46691 * 60.68621 * 1 2 3 31 31 H 1.09004 * 109.46847 * 180.68037 * 1 2 3 32 32 H 1.08993 * 109.47229 * 300.68042 * 1 2 3 33 33 H 1.08998 * 109.58279 * 353.37701 * 7 6 4 34 34 H 1.09005 * 109.58149 * 113.79697 * 7 6 4 35 35 H 1.08999 * 109.49911 * 65.32064 * 8 7 6 36 36 H 1.09008 * 109.49086 * 185.38125 * 8 7 6 37 37 H 1.08999 * 109.43394 * 301.31739 * 9 8 7 38 38 H 1.08998 * 109.48938 * 181.35613 * 9 8 7 39 39 H 0.97005 * 119.99535 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.47387 * 322.76334 * 21 12 10 41 41 H 1.09003 * 109.46946 * 202.76107 * 21 12 10 42 42 H 1.09000 * 109.46776 * 54.99769 * 22 21 12 43 43 H 1.08999 * 109.47531 * 174.99826 * 22 21 12 44 44 H 0.96702 * 114.00419 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.58868 * 6.63196 * 24 6 4 46 46 H 1.09002 * 109.58819 * 246.20096 * 24 6 4 47 47 H 1.07999 * 125.95640 * 359.92862 * 26 25 2 48 48 H 1.08001 * 125.52533 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.2707 -1.8990 -1.1895 6 7 2.2170 -0.0251 -2.3761 7 6 1.8359 1.3907 -2.4712 8 6 0.9107 1.5722 -3.6786 9 6 1.5969 1.0207 -4.9304 10 6 1.8674 -0.4747 -4.7489 11 1 0.9270 -0.9952 -4.5679 12 7 2.4965 -1.0082 -5.9597 13 6 3.6956 -0.5039 -6.3873 14 1 3.8984 0.5533 -6.3009 15 6 4.6504 -1.3516 -6.9321 16 7 4.6039 -2.6428 -6.6813 17 14 6.0014 -0.6597 -8.0209 18 1 7.1698 -0.2869 -7.1836 19 1 6.4109 -1.6852 -9.0137 20 1 5.4974 0.5433 -8.7310 21 6 1.8427 -2.0813 -6.7127 22 6 0.7872 -1.4812 -7.6436 23 8 -0.2491 -0.8807 -6.8643 24 6 2.8035 -0.6795 -3.5536 25 7 2.0183 -0.6906 1.1962 26 6 1.4558 -1.7518 1.8000 27 7 2.1938 -2.0699 2.8324 28 6 3.2315 -1.2387 2.9195 29 7 3.1708 -0.3795 1.9362 30 1 -0.3632 0.5031 -0.8961 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5243 0.8838 33 1 1.3140 1.6904 -1.5625 34 1 2.7294 2.0016 -2.6003 35 1 -0.0209 1.0330 -3.5074 36 1 0.6974 2.6322 -3.8172 37 1 2.5401 1.5440 -5.0873 38 1 0.9506 1.1704 -5.7952 39 1 5.2713 -3.2351 -7.0618 40 1 1.3643 -2.7728 -6.0190 41 1 2.5865 -2.6159 -7.3035 42 1 1.2498 -0.7248 -8.2776 43 1 0.3631 -2.2681 -8.2673 44 1 -0.9541 -0.4787 -7.3902 45 1 2.9199 -1.7457 -3.3591 46 1 3.7758 -0.2373 -3.7710 47 1 0.5520 -2.2537 1.4877 48 1 4.0002 -1.2719 3.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692037044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:00 Heat of formation + Delta-G solvation = 15.061553 kcal Electronic energy + Delta-G solvation = -30964.855941 eV Core-core repulsion = 26864.036598 eV Total energy + Delta-G solvation = -4100.819344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.15885 -41.35390 -39.15732 -37.73917 -36.41572 -36.01698 -33.88550 -32.88998 -32.40814 -31.59795 -30.74420 -29.00242 -27.01340 -26.10908 -25.48595 -23.81340 -23.13427 -22.80261 -22.22055 -21.45484 -20.10148 -18.70567 -18.42896 -18.22760 -18.00241 -17.02392 -16.76652 -16.37021 -16.26428 -16.10369 -15.72762 -15.47668 -15.23419 -15.13959 -15.04820 -14.81386 -14.28528 -14.14123 -14.11572 -13.61540 -13.48215 -13.33052 -13.26865 -13.13255 -12.85395 -12.78088 -12.55869 -12.35651 -12.29269 -12.03979 -11.89836 -11.69970 -11.58306 -11.41446 -11.20687 -11.08851 -10.81505 -10.69121 -10.52978 -10.48995 -9.71499 -8.53296 -7.85459 -5.44515 0.52583 1.06916 1.43273 1.46651 1.48255 1.55318 1.92709 2.01280 2.49982 3.18780 3.23723 3.42944 3.44121 3.56067 3.68879 3.76194 3.92750 4.07050 4.13594 4.15448 4.25146 4.35493 4.49618 4.54727 4.55676 4.61088 4.65130 4.67727 4.72447 4.86674 4.93083 4.98217 5.03215 5.16273 5.20179 5.25231 5.30196 5.43308 5.46180 5.54288 5.61426 5.67667 5.74592 5.77332 6.34113 6.46382 6.95548 7.05764 7.10492 7.17129 7.85321 8.41879 9.13680 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.003405 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.140433 B = 8221.645255 C = 9060.585799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.147 0.853 4 C 0.494 3.506 5 O -0.586 6.586 6 N -0.595 5.595 7 C 0.095 3.905 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.183 3.817 11 H 0.045 0.955 12 N -0.585 5.585 13 C -0.255 4.255 14 H 0.062 0.938 15 C -0.037 4.037 16 N -0.923 5.923 17 Si 0.954 3.046 18 H -0.290 1.290 19 H -0.294 1.294 20 H -0.266 1.266 21 C 0.153 3.847 22 C 0.074 3.926 23 O -0.575 6.575 24 C 0.122 3.878 25 N -0.371 5.371 26 C 0.275 3.725 27 N -0.574 5.574 28 C 0.196 3.804 29 N -0.352 5.352 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.250 0.750 40 H 0.009 0.991 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.382 0.618 45 H 0.034 0.966 46 H 0.048 0.952 47 H 0.242 0.758 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 11.652 10.390 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.165 0.835 4 C 0.280 3.720 5 O -0.465 6.465 6 N -0.327 5.327 7 C -0.026 4.026 8 C -0.158 4.158 9 C -0.152 4.152 10 C 0.076 3.924 11 H 0.064 0.936 12 N -0.305 5.305 13 C -0.385 4.385 14 H 0.080 0.920 15 C -0.234 4.234 16 N -0.568 5.568 17 Si 0.782 3.218 18 H -0.217 1.217 19 H -0.220 1.220 20 H -0.190 1.190 21 C 0.026 3.974 22 C -0.006 4.006 23 O -0.381 6.381 24 C -0.003 4.003 25 N -0.161 5.161 26 C -0.021 4.021 27 N -0.302 5.302 28 C -0.107 4.107 29 N -0.179 5.179 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.230 0.770 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.258 0.742 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.654 11.042 10.855 19.998 hybrid contribution 1.110 -0.535 -1.616 2.032 sum -11.545 10.508 9.240 18.140 Atomic orbital electron populations 1.22269 0.86479 1.05504 1.07131 1.21530 0.99058 0.97330 0.78143 0.83539 1.21351 0.77925 0.87209 0.85472 1.90733 1.53419 1.17478 1.84900 1.48329 1.60433 1.13059 1.10925 1.22261 1.00108 0.78915 1.01327 1.21880 0.98101 1.03015 0.92764 1.21745 0.99807 0.95153 0.98460 1.20605 0.92623 0.94810 0.84406 0.93626 1.43905 1.20670 1.41775 1.24130 1.19162 0.91861 0.91448 1.36032 0.92046 1.25878 0.99128 0.95796 1.02628 1.70164 1.36751 1.04348 1.45498 0.85510 0.79550 0.77828 0.78923 1.21695 1.22036 1.19028 1.20849 0.92669 0.89942 0.93903 1.22714 0.88558 0.95667 0.93652 1.86509 1.36151 1.77535 1.37945 1.21906 0.97188 0.95968 0.85205 1.50295 1.18604 1.25218 1.22003 1.26496 0.99661 0.87126 0.88849 1.70589 1.08109 1.29298 1.22183 1.26635 0.97496 0.89383 0.97138 1.77977 1.03768 1.27035 1.09152 0.86816 0.90707 0.87319 0.86050 0.90595 0.90831 0.87476 0.93732 0.91917 0.94092 0.97270 0.90775 0.94702 0.93564 0.77001 0.94730 0.93401 0.74203 0.73824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.65 71.98 0.62 -1.14 16 2 C 0.15 3.02 2.90 44.24 0.13 3.15 16 3 H 0.15 2.35 6.56 -2.39 -0.02 2.34 16 4 C 0.49 15.81 6.88 87.65 0.60 16.41 16 5 O -0.59 -25.36 15.83 -3.04 -0.05 -25.41 16 6 N -0.60 -18.64 2.97 -818.88 -2.43 -21.07 16 7 C 0.09 1.89 6.08 86.36 0.53 2.41 16 8 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 9 C -0.11 -3.56 5.11 30.62 0.16 -3.40 16 10 C 0.18 7.45 2.11 45.07 0.10 7.55 16 11 H 0.05 1.95 7.48 -2.39 -0.02 1.93 16 12 N -0.58 -28.05 2.37 -677.59 -1.60 -29.66 16 13 C -0.25 -13.23 8.11 84.03 0.68 -12.54 16 14 H 0.06 3.14 6.89 -2.91 -0.02 3.12 16 15 C -0.04 -2.02 4.90 84.86 0.42 -1.60 16 16 N -0.92 -53.98 11.56 21.65 0.25 -53.73 16 17 Si 0.95 43.67 29.60 68.60 2.03 45.70 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.15 7.20 5.59 86.38 0.48 7.68 16 22 C 0.07 2.70 7.39 71.98 0.53 3.23 16 23 O -0.58 -18.33 12.05 -148.98 -1.80 -20.12 16 24 C 0.12 5.24 5.77 86.36 0.50 5.74 16 25 N -0.37 -9.56 3.28 -335.02 -1.10 -10.65 16 26 C 0.27 6.74 11.48 180.36 2.07 8.81 16 27 N -0.57 -15.74 11.19 -204.00 -2.28 -18.02 16 28 C 0.20 5.01 13.03 180.77 2.36 7.37 16 29 N -0.35 -10.13 12.70 -61.25 -0.78 -10.91 16 30 H 0.11 0.89 7.45 -2.39 -0.02 0.87 16 31 H 0.07 0.93 7.19 -2.39 -0.02 0.92 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.32 4.97 -2.39 -0.01 1.31 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.04 1.54 7.05 -2.39 -0.02 1.52 16 38 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 39 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 40 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 41 H 0.07 3.95 5.63 -2.39 -0.01 3.94 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.38 7.94 9.12 -74.06 -0.68 7.27 16 45 H 0.03 1.81 7.00 -2.39 -0.02 1.79 16 46 H 0.05 2.28 7.50 -2.39 -0.02 2.26 16 47 H 0.24 4.11 7.30 -2.91 -0.02 4.09 16 48 H 0.25 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -81.45 382.01 1.91 -79.54 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.31 Total: 22.88 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 9.35 Total: 41.46 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -7.94 Total: -144.05 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.84 Total: -45.53 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -81.45 1.91 -79.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.603 kcal (2) G-P(sol) polarization free energy of solvation -81.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds