Wall clock time and date at job start Tue Mar 31 2020 20:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.50700 * 109.46881 * 240.00619 * 2 1 3 5 5 O 1.21279 * 120.00265 * 333.70018 * 4 2 1 6 6 N 1.34784 * 119.99813 * 153.70816 * 4 2 1 7 7 C 1.46922 * 120.62797 * 4.21745 * 6 4 2 8 8 C 1.53628 * 108.54049 * 126.37463 * 7 6 4 9 9 C 1.53041 * 109.24214 * 54.85433 * 8 7 6 10 10 C 1.53039 * 109.53504 * 298.50697 * 9 8 7 11 11 H 1.08995 * 109.50153 * 301.41622 * 10 9 8 12 12 N 1.46502 * 109.52188 * 181.33510 * 10 9 8 13 13 C 1.36941 * 119.99812 * 300.14894 * 12 10 9 14 14 H 1.08003 * 120.00414 * 313.92754 * 13 12 10 15 15 C 1.38812 * 119.99865 * 133.93260 * 13 12 10 16 16 N 1.31623 * 119.99937 * 3.61315 * 15 13 12 17 17 Si 1.86802 * 120.00088 * 183.61904 * 15 13 12 18 18 H 1.48510 * 109.47030 * 89.99694 * 17 15 13 19 19 H 1.48500 * 109.47294 * 209.99715 * 17 15 13 20 20 H 1.48494 * 109.47165 * 329.99947 * 17 15 13 21 21 C 1.46495 * 120.00033 * 120.15203 * 12 10 9 22 22 C 1.52996 * 109.47547 * 94.09901 * 21 12 10 23 23 O 1.42908 * 109.46788 * 65.00196 * 22 21 12 24 24 C 1.46928 * 120.62876 * 184.50017 * 6 4 2 25 25 N 1.46497 * 109.47197 * 120.00414 * 2 1 3 26 26 C 1.34425 * 126.82189 * 34.70777 * 25 2 1 27 27 N 1.30830 * 108.07748 * 179.89009 * 26 25 2 28 28 C 1.33239 * 109.83079 * 0.38937 * 27 26 25 29 29 N 1.30719 * 108.94475 * 359.75566 * 28 27 26 30 30 H 1.08997 * 109.46722 * 295.07653 * 1 2 3 31 31 H 1.09002 * 109.46993 * 175.07607 * 1 2 3 32 32 H 1.09001 * 109.46670 * 55.07766 * 1 2 3 33 33 H 1.08998 * 109.58540 * 246.20024 * 7 6 4 34 34 H 1.08990 * 109.59077 * 6.63105 * 7 6 4 35 35 H 1.08999 * 109.63179 * 294.86255 * 8 7 6 36 36 H 1.09003 * 109.45710 * 174.73668 * 8 7 6 37 37 H 1.09000 * 109.45704 * 178.49375 * 9 8 7 38 38 H 1.08990 * 109.46197 * 58.53312 * 9 8 7 39 39 H 0.96998 * 119.99565 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.47222 * 214.10019 * 21 12 10 41 41 H 1.09000 * 109.47335 * 334.09377 * 21 12 10 42 42 H 1.09002 * 109.47362 * 184.99752 * 22 21 12 43 43 H 1.08990 * 109.47105 * 305.00422 * 22 21 12 44 44 H 0.96696 * 113.99585 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.58477 * 353.37003 * 24 6 4 46 46 H 1.09006 * 109.58574 * 113.65387 * 24 6 4 47 47 H 1.08001 * 125.96197 * 0.04763 * 26 25 2 48 48 H 1.07995 * 125.53242 * 179.79513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.3467 -1.5560 -1.7649 6 7 3.2436 -0.4057 -1.7372 7 6 4.1241 0.5487 -1.0498 8 6 5.4894 -0.1194 -0.8268 9 6 6.0309 -0.6202 -2.1677 10 6 5.0737 -1.6636 -2.7486 11 1 4.9664 -2.4900 -2.0461 12 7 5.6083 -2.1661 -4.0167 13 6 5.8300 -1.3028 -5.0563 14 1 5.0778 -0.5756 -5.3243 15 6 7.0216 -1.3623 -5.7658 16 7 7.9082 -2.2940 -5.4860 17 14 7.3670 -0.1201 -7.1174 18 1 8.0582 1.0607 -6.5398 19 1 8.2312 -0.7422 -8.1525 20 1 6.0863 0.3090 -7.7344 21 6 5.9055 -3.5920 -4.1725 22 6 4.7013 -4.2987 -4.7979 23 8 4.4971 -3.8080 -6.1245 24 6 3.7061 -1.0172 -2.9906 25 7 2.0184 -0.6907 1.1961 26 6 1.4530 -1.7486 1.8028 27 7 2.1931 -2.0692 2.8329 28 6 3.2302 -1.2375 2.9207 29 7 3.1670 -0.3753 1.9402 30 1 -0.3633 0.4356 0.9308 31 1 -0.3633 -1.0239 -0.0882 32 1 -0.3633 0.5883 -0.8426 33 1 4.2467 1.4406 -1.6643 34 1 3.6879 0.8216 -0.0890 35 1 5.3781 -0.9604 -0.1423 36 1 6.1835 0.6059 -0.4022 37 1 7.0118 -1.0712 -2.0175 38 1 6.1185 0.2173 -2.8596 39 1 8.7407 -2.3358 -5.9821 40 1 6.7744 -3.7135 -4.8195 41 1 6.1160 -4.0282 -3.1960 42 1 4.8874 -5.3722 -4.8324 43 1 3.8130 -4.1031 -4.1974 44 1 3.7478 -4.2127 -6.5825 45 1 2.9939 -1.7779 -3.3105 46 1 3.7929 -0.2508 -3.7608 47 1 0.5472 -2.2484 1.4925 48 1 3.9989 -1.2706 3.6786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692037045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:04 Heat of formation + Delta-G solvation = 44.027033 kcal Electronic energy + Delta-G solvation = -31337.024216 eV Core-core repulsion = 27237.460910 eV Total energy + Delta-G solvation = -4099.563306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32287 -40.13015 -37.68974 -36.13064 -35.16781 -34.52695 -32.19924 -31.51579 -31.29310 -30.23972 -29.56867 -27.31319 -25.98715 -24.51183 -24.06751 -22.43812 -22.04754 -21.90808 -20.64455 -19.78107 -19.02957 -17.62258 -17.22604 -16.47001 -16.41590 -16.05914 -15.52051 -15.14624 -14.85038 -14.47887 -14.38533 -14.27033 -13.99952 -13.76343 -13.51516 -13.21651 -13.06949 -12.78961 -12.77925 -12.54152 -12.42081 -12.29692 -12.01128 -11.64200 -11.25751 -11.01395 -10.83270 -10.76344 -10.73555 -10.64028 -10.35139 -10.24445 -10.14119 -9.92959 -9.90952 -9.74025 -9.60458 -9.43182 -8.94550 -8.57941 -8.29618 -6.42011 -5.62197 -3.41144 1.39350 1.71486 2.82463 2.82613 3.02274 3.39724 3.46818 3.48523 4.06782 4.18039 4.20520 4.51739 4.53811 4.69034 4.98927 5.05353 5.17372 5.25687 5.28399 5.33677 5.44625 5.47360 5.53106 5.64589 5.68897 5.85134 5.94742 6.03657 6.06767 6.20308 6.23237 6.28409 6.30889 6.39964 6.46186 6.54821 6.61441 6.70143 6.76894 6.87242 7.02084 7.18941 7.49254 7.78951 7.90498 8.00716 8.09191 8.57790 8.76886 9.29194 9.86148 10.45075 11.31140 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.003522 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.948268 B = 7947.654921 C = 8220.987098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.122 0.878 4 C 0.500 3.500 5 O -0.533 6.533 6 N -0.589 5.589 7 C 0.101 3.899 8 C -0.124 4.124 9 C -0.122 4.122 10 C 0.170 3.830 11 H 0.045 0.955 12 N -0.571 5.571 13 C -0.235 4.235 14 H 0.053 0.947 15 C 0.027 3.973 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.129 3.871 22 C 0.063 3.937 23 O -0.539 6.539 24 C 0.100 3.900 25 N -0.370 5.370 26 C 0.267 3.733 27 N -0.546 5.546 28 C 0.200 3.800 29 N -0.313 5.313 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.125 0.875 41 H 0.031 0.969 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.346 0.654 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.217 0.783 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 4.456 13.346 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.140 0.860 4 C 0.283 3.717 5 O -0.409 6.409 6 N -0.321 5.321 7 C -0.021 4.021 8 C -0.163 4.163 9 C -0.161 4.161 10 C 0.062 3.938 11 H 0.064 0.936 12 N -0.290 5.290 13 C -0.365 4.365 14 H 0.071 0.929 15 C -0.172 4.172 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.003 3.997 22 C -0.018 4.018 23 O -0.340 6.340 24 C -0.023 4.023 25 N -0.163 5.163 26 C -0.030 4.030 27 N -0.273 5.273 28 C -0.103 4.103 29 N -0.140 5.140 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.142 0.858 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.188 0.812 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.233 0.767 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.894 4.665 13.138 17.693 hybrid contribution -0.390 0.208 -1.021 1.112 sum -11.284 4.873 12.117 17.260 Atomic orbital electron populations 1.22040 0.89976 1.05161 1.03932 1.21551 0.96913 0.98045 0.80320 0.85989 1.20426 0.82145 0.83699 0.85399 1.90713 1.56416 1.32242 1.61565 1.48339 1.15151 1.43324 1.25314 1.22019 0.91511 0.91621 0.96998 1.21920 0.95053 1.00207 0.99134 1.21931 0.99675 1.00394 0.94131 1.20598 0.90292 0.94010 0.88916 0.93638 1.43601 1.74316 1.02791 1.08305 1.18695 0.97197 1.12727 1.07891 0.92909 1.25378 0.95523 0.97211 0.99132 1.69545 1.08867 1.32740 1.42634 0.86396 0.77886 0.81441 0.81622 1.21485 1.21758 1.20455 1.21482 0.97505 0.82961 0.97734 1.23024 0.99894 0.94921 0.83915 1.86892 1.52203 1.67188 1.27676 1.22467 0.98178 0.98399 0.83211 1.50413 1.19192 1.24879 1.21787 1.26027 0.99266 0.88008 0.89658 1.70604 1.07119 1.28836 1.20750 1.26022 0.97220 0.89934 0.97080 1.78037 1.02893 1.25020 1.08071 0.90674 0.89964 0.89213 0.91246 0.89639 0.92385 0.91352 0.91886 0.91234 0.93627 0.85795 0.95105 0.96558 0.96475 0.81173 0.89957 0.90675 0.76718 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.39 37.16 0.31 -0.85 16 2 C 0.14 1.44 2.79 -69.08 -0.19 1.25 16 3 H 0.12 1.10 6.63 -51.93 -0.34 0.75 16 4 C 0.50 7.30 7.12 -10.98 -0.08 7.22 16 5 O -0.53 -9.38 15.42 5.56 0.09 -9.30 16 6 N -0.59 -9.14 2.97 -172.50 -0.51 -9.65 16 7 C 0.10 1.34 6.19 -3.49 -0.02 1.32 16 8 C -0.12 -1.83 6.10 -26.38 -0.16 -2.00 16 9 C -0.12 -2.30 5.11 -26.69 -0.14 -2.43 16 10 C 0.17 3.49 2.78 -67.81 -0.19 3.30 16 11 H 0.05 0.96 7.74 -51.93 -0.40 0.56 16 12 N -0.57 -13.68 2.37 -165.53 -0.39 -14.07 16 13 C -0.24 -6.17 7.44 -15.06 -0.11 -6.28 16 14 H 0.05 1.42 6.81 -52.48 -0.36 1.06 16 15 C 0.03 0.73 5.40 -17.43 -0.09 0.63 16 16 N -0.89 -25.24 10.75 55.49 0.60 -24.64 16 17 Si 0.90 21.65 29.56 -169.99 -5.02 16.62 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.13 3.07 5.79 -4.05 -0.02 3.05 16 22 C 0.06 1.33 7.39 37.16 0.27 1.60 16 23 O -0.54 -11.98 12.94 -35.23 -0.46 -12.44 16 24 C 0.10 1.90 5.77 -3.71 -0.02 1.88 16 25 N -0.37 -4.19 3.52 -57.24 -0.20 -4.39 16 26 C 0.27 2.91 11.79 -90.66 -1.07 1.84 16 27 N -0.55 -6.68 11.19 -15.83 -0.18 -6.86 16 28 C 0.20 2.24 13.03 -91.81 -1.20 1.04 16 29 N -0.31 -3.78 11.47 29.29 0.34 -3.44 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.67 7.02 -51.93 -0.36 0.30 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.00 4.47 -51.93 -0.23 0.77 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.41 7.70 -51.93 -0.40 1.01 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.13 3.39 5.16 -51.93 -0.27 3.12 16 41 H 0.03 0.69 7.83 -51.93 -0.41 0.28 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.35 5.79 9.12 45.56 0.42 6.21 16 45 H 0.08 1.73 7.00 -51.93 -0.36 1.36 16 46 H 0.08 1.51 6.88 -51.93 -0.36 1.15 16 47 H 0.22 1.67 7.46 -52.49 -0.39 1.28 16 48 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -33.20 381.90 -9.11 -42.31 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.41 Total: 8.52 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -2.71 Total: 11.59 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.35 Total: -63.06 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.37 Total: -21.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.20 -9.11 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.339 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds