Wall clock time and date at job start Tue Mar 31 2020 20:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.50700 * 109.46881 * 240.00619 * 2 1 3 5 5 O 1.21279 * 120.00265 * 333.70018 * 4 2 1 6 6 N 1.34784 * 119.99813 * 153.70816 * 4 2 1 7 7 C 1.46922 * 120.62797 * 4.21745 * 6 4 2 8 8 C 1.53628 * 108.54049 * 126.37463 * 7 6 4 9 9 C 1.53041 * 109.24214 * 54.85433 * 8 7 6 10 10 C 1.53039 * 109.53504 * 298.50697 * 9 8 7 11 11 H 1.08995 * 109.50153 * 301.41622 * 10 9 8 12 12 N 1.46502 * 109.52188 * 181.33510 * 10 9 8 13 13 C 1.36941 * 119.99812 * 300.14894 * 12 10 9 14 14 H 1.08003 * 120.00414 * 313.92754 * 13 12 10 15 15 C 1.38812 * 119.99865 * 133.93260 * 13 12 10 16 16 N 1.31623 * 119.99937 * 3.61315 * 15 13 12 17 17 Si 1.86802 * 120.00088 * 183.61904 * 15 13 12 18 18 H 1.48510 * 109.47030 * 89.99694 * 17 15 13 19 19 H 1.48500 * 109.47294 * 209.99715 * 17 15 13 20 20 H 1.48494 * 109.47165 * 329.99947 * 17 15 13 21 21 C 1.46495 * 120.00033 * 120.15203 * 12 10 9 22 22 C 1.52996 * 109.47547 * 94.09901 * 21 12 10 23 23 O 1.42908 * 109.46788 * 65.00196 * 22 21 12 24 24 C 1.46928 * 120.62876 * 184.50017 * 6 4 2 25 25 N 1.46497 * 109.47197 * 120.00414 * 2 1 3 26 26 C 1.34425 * 126.82189 * 34.70777 * 25 2 1 27 27 N 1.30830 * 108.07748 * 179.89009 * 26 25 2 28 28 C 1.33239 * 109.83079 * 0.38937 * 27 26 25 29 29 N 1.30719 * 108.94475 * 359.75566 * 28 27 26 30 30 H 1.08997 * 109.46722 * 295.07653 * 1 2 3 31 31 H 1.09002 * 109.46993 * 175.07607 * 1 2 3 32 32 H 1.09001 * 109.46670 * 55.07766 * 1 2 3 33 33 H 1.08998 * 109.58540 * 246.20024 * 7 6 4 34 34 H 1.08990 * 109.59077 * 6.63105 * 7 6 4 35 35 H 1.08999 * 109.63179 * 294.86255 * 8 7 6 36 36 H 1.09003 * 109.45710 * 174.73668 * 8 7 6 37 37 H 1.09000 * 109.45704 * 178.49375 * 9 8 7 38 38 H 1.08990 * 109.46197 * 58.53312 * 9 8 7 39 39 H 0.96998 * 119.99565 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.47222 * 214.10019 * 21 12 10 41 41 H 1.09000 * 109.47335 * 334.09377 * 21 12 10 42 42 H 1.09002 * 109.47362 * 184.99752 * 22 21 12 43 43 H 1.08990 * 109.47105 * 305.00422 * 22 21 12 44 44 H 0.96696 * 113.99585 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.58477 * 353.37003 * 24 6 4 46 46 H 1.09006 * 109.58574 * 113.65387 * 24 6 4 47 47 H 1.08001 * 125.96197 * 0.04763 * 26 25 2 48 48 H 1.07995 * 125.53242 * 179.79513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 1.3467 -1.5560 -1.7649 6 7 3.2436 -0.4057 -1.7372 7 6 4.1241 0.5487 -1.0498 8 6 5.4894 -0.1194 -0.8268 9 6 6.0309 -0.6202 -2.1677 10 6 5.0737 -1.6636 -2.7486 11 1 4.9664 -2.4900 -2.0461 12 7 5.6083 -2.1661 -4.0167 13 6 5.8300 -1.3028 -5.0563 14 1 5.0778 -0.5756 -5.3243 15 6 7.0216 -1.3623 -5.7658 16 7 7.9082 -2.2940 -5.4860 17 14 7.3670 -0.1201 -7.1174 18 1 8.0582 1.0607 -6.5398 19 1 8.2312 -0.7422 -8.1525 20 1 6.0863 0.3090 -7.7344 21 6 5.9055 -3.5920 -4.1725 22 6 4.7013 -4.2987 -4.7979 23 8 4.4971 -3.8080 -6.1245 24 6 3.7061 -1.0172 -2.9906 25 7 2.0184 -0.6907 1.1961 26 6 1.4530 -1.7486 1.8028 27 7 2.1931 -2.0692 2.8329 28 6 3.2302 -1.2375 2.9207 29 7 3.1670 -0.3753 1.9402 30 1 -0.3633 0.4356 0.9308 31 1 -0.3633 -1.0239 -0.0882 32 1 -0.3633 0.5883 -0.8426 33 1 4.2467 1.4406 -1.6643 34 1 3.6879 0.8216 -0.0890 35 1 5.3781 -0.9604 -0.1423 36 1 6.1835 0.6059 -0.4022 37 1 7.0118 -1.0712 -2.0175 38 1 6.1185 0.2173 -2.8596 39 1 8.7407 -2.3358 -5.9821 40 1 6.7744 -3.7135 -4.8195 41 1 6.1160 -4.0282 -3.1960 42 1 4.8874 -5.3722 -4.8324 43 1 3.8130 -4.1031 -4.1974 44 1 3.7478 -4.2127 -6.5825 45 1 2.9939 -1.7779 -3.3105 46 1 3.7929 -0.2508 -3.7608 47 1 0.5472 -2.2484 1.4925 48 1 3.9989 -1.2706 3.6786 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692037045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:03 Heat of formation + Delta-G solvation = 22.388146 kcal Electronic energy + Delta-G solvation = -31337.962549 eV Core-core repulsion = 27237.460910 eV Total energy + Delta-G solvation = -4100.501639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.16611 -41.35103 -39.18816 -37.76965 -36.33754 -35.97688 -33.80371 -32.97778 -32.34878 -31.40307 -30.82648 -29.10437 -27.14246 -26.05364 -25.40481 -23.75243 -23.17323 -22.81204 -22.21111 -21.38765 -20.18336 -18.80306 -18.35339 -18.18146 -18.04495 -17.22794 -16.79681 -16.41357 -16.15645 -16.05765 -15.77765 -15.41947 -15.22348 -15.13531 -15.00253 -14.53958 -14.49926 -14.11361 -13.98433 -13.73168 -13.56748 -13.35018 -13.14454 -13.01741 -12.89917 -12.72674 -12.61018 -12.45169 -12.25076 -11.96135 -11.82550 -11.72348 -11.60758 -11.53190 -11.32621 -11.02777 -10.77530 -10.66320 -10.51545 -10.46178 -9.78212 -8.37741 -7.63936 -5.47281 0.52126 0.82026 1.46584 1.48740 1.55751 1.76350 1.86156 2.01154 2.55128 3.17552 3.32699 3.39434 3.47839 3.53031 3.76965 3.80624 3.96606 4.01002 4.02676 4.11058 4.21485 4.27282 4.36374 4.49328 4.55218 4.62195 4.64920 4.69204 4.72233 4.82920 4.86328 4.93299 4.97546 5.04196 5.07572 5.14105 5.25016 5.36820 5.41913 5.48420 5.58299 5.70685 5.75511 5.99771 6.27799 6.63723 6.88871 7.08447 7.17507 7.29945 7.90000 8.45915 9.24647 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.003522 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.948268 B = 7947.654921 C = 8220.987098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.148 3.852 3 H 0.142 0.858 4 C 0.497 3.503 5 O -0.565 6.565 6 N -0.594 5.594 7 C 0.105 3.895 8 C -0.112 4.112 9 C -0.112 4.112 10 C 0.172 3.828 11 H 0.036 0.964 12 N -0.584 5.584 13 C -0.227 4.227 14 H 0.046 0.954 15 C -0.021 4.021 16 N -0.920 5.920 17 Si 0.950 3.050 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.277 1.277 21 C 0.123 3.877 22 C 0.073 3.927 23 O -0.567 6.567 24 C 0.120 3.880 25 N -0.376 5.376 26 C 0.266 3.734 27 N -0.570 5.570 28 C 0.197 3.803 29 N -0.331 5.331 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.247 0.753 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.019 0.981 44 H 0.370 0.630 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.240 0.760 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.230 5.908 14.863 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.042 3.958 3 H 0.160 0.840 4 C 0.282 3.718 5 O -0.443 6.443 6 N -0.326 5.326 7 C -0.016 4.016 8 C -0.151 4.151 9 C -0.151 4.151 10 C 0.064 3.936 11 H 0.054 0.946 12 N -0.304 5.304 13 C -0.357 4.357 14 H 0.063 0.937 15 C -0.218 4.218 16 N -0.565 5.565 17 Si 0.779 3.221 18 H -0.208 1.208 19 H -0.225 1.225 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.007 4.007 23 O -0.371 6.371 24 C -0.004 4.004 25 N -0.168 5.168 26 C -0.031 4.031 27 N -0.297 5.297 28 C -0.106 4.106 29 N -0.157 5.157 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.216 0.784 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.256 0.744 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.434 6.137 14.683 20.195 hybrid contribution 0.023 -0.327 -1.457 1.493 sum -12.411 5.810 13.226 19.045 Atomic orbital electron populations 1.22084 0.87677 1.05280 1.05574 1.21603 0.98505 0.97884 0.77855 0.84009 1.21228 0.81199 0.83107 0.86221 1.90697 1.57165 1.33691 1.62793 1.48367 1.16146 1.43716 1.24382 1.22147 0.90176 0.91196 0.98130 1.21811 0.96417 1.00587 0.96255 1.21762 0.98159 0.99041 0.96143 1.20652 0.91398 0.94200 0.87317 0.94585 1.43735 1.74767 1.02798 1.09143 1.18732 0.96637 1.12154 1.08208 0.93685 1.25950 0.95712 0.98693 1.01404 1.69736 1.09030 1.34057 1.43715 0.85560 0.77490 0.79726 0.79346 1.20817 1.22479 1.20172 1.21375 0.97700 0.83599 0.97616 1.22812 0.98606 0.95828 0.83481 1.86806 1.53849 1.68234 1.28212 1.21901 0.96472 0.97317 0.84755 1.50476 1.19252 1.25224 1.21861 1.26565 0.99693 0.87644 0.89154 1.70632 1.07884 1.29554 1.21652 1.26621 0.97397 0.89237 0.97307 1.77979 1.03402 1.25740 1.08604 0.88263 0.90531 0.88389 0.89821 0.87323 0.93090 0.88879 0.94404 0.92678 0.94313 0.88923 0.94564 0.94041 0.96239 0.78392 0.92280 0.92028 0.74388 0.74107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.39 71.98 0.60 -1.20 16 2 C 0.15 2.65 2.79 44.25 0.12 2.78 16 3 H 0.14 2.00 6.63 -2.39 -0.02 1.98 16 4 C 0.50 13.74 7.12 87.66 0.62 14.37 16 5 O -0.57 -19.49 15.42 -3.02 -0.05 -19.53 16 6 N -0.59 -17.72 2.97 -818.06 -2.43 -20.14 16 7 C 0.11 2.54 6.19 86.51 0.54 3.07 16 8 C -0.11 -3.12 6.10 30.82 0.19 -2.93 16 9 C -0.11 -4.22 5.11 30.62 0.16 -4.07 16 10 C 0.17 7.17 2.78 45.07 0.13 7.29 16 11 H 0.04 1.55 7.74 -2.39 -0.02 1.53 16 12 N -0.58 -28.67 2.37 -677.61 -1.61 -30.28 16 13 C -0.23 -12.10 7.44 84.03 0.63 -11.48 16 14 H 0.05 2.46 6.81 -2.91 -0.02 2.44 16 15 C -0.02 -1.18 5.40 84.86 0.46 -0.72 16 16 N -0.92 -53.34 10.75 21.65 0.23 -53.10 16 17 Si 0.95 45.05 29.56 68.60 2.03 47.07 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 C 0.12 6.00 5.79 86.38 0.50 6.50 16 22 C 0.07 3.07 7.39 71.98 0.53 3.60 16 23 O -0.57 -25.16 12.94 -148.98 -1.93 -27.09 16 24 C 0.12 4.58 5.77 86.36 0.50 5.08 16 25 N -0.38 -7.53 3.52 -335.02 -1.18 -8.71 16 26 C 0.27 5.20 11.79 180.36 2.13 7.32 16 27 N -0.57 -12.82 11.19 -204.01 -2.28 -15.11 16 28 C 0.20 3.96 13.03 180.76 2.36 6.32 16 29 N -0.33 -7.10 11.47 -61.25 -0.70 -7.80 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.05 7.02 -2.39 -0.02 1.04 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.18 4.47 -2.39 -0.01 2.17 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.05 2.23 7.70 -2.39 -0.02 2.21 16 39 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 40 H 0.09 5.23 5.16 -2.38 -0.01 5.22 16 41 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 42 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.37 12.11 9.12 -74.06 -0.68 11.44 16 45 H 0.06 2.53 7.00 -2.39 -0.02 2.51 16 46 H 0.06 2.50 6.88 -2.38 -0.02 2.49 16 47 H 0.24 3.14 7.46 -2.91 -0.02 3.12 16 48 H 0.24 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -73.36 381.90 1.85 -71.51 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.31 Total: 27.26 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 9.45 Total: 35.92 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -7.96 Total: -135.14 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.97 Total: -46.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.36 1.85 -71.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.898 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds