Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 C 1.50695 * 109.47369 * 120.00085 * 2 1 3 5 5 O 1.21285 * 119.99842 * 23.76854 * 4 2 1 6 6 N 1.34781 * 120.00480 * 203.76737 * 4 2 1 7 7 C 1.46923 * 120.62486 * 5.26554 * 6 4 2 8 8 C 1.53191 * 108.77392 * 233.58255 * 7 6 4 9 9 C 1.53031 * 109.34336 * 305.38822 * 8 7 6 10 10 C 1.53036 * 109.54188 * 61.31262 * 9 8 7 11 11 H 1.09000 * 109.50166 * 58.65385 * 10 9 8 12 12 N 1.46500 * 109.50205 * 178.71796 * 10 9 8 13 13 C 1.36943 * 119.99638 * 59.93541 * 12 10 9 14 14 H 1.07999 * 120.00075 * 315.24776 * 13 12 10 15 15 C 1.38812 * 119.99872 * 135.25874 * 13 12 10 16 16 N 1.31620 * 120.00120 * 2.84441 * 15 13 12 17 17 Si 1.86805 * 120.00007 * 182.85284 * 15 13 12 18 18 H 1.48503 * 109.47281 * 89.99577 * 17 15 13 19 19 H 1.48494 * 109.46842 * 209.99474 * 17 15 13 20 20 H 1.48497 * 109.46866 * 329.99426 * 17 15 13 21 21 C 1.46496 * 120.00323 * 239.93815 * 12 10 9 22 22 C 1.53000 * 109.47271 * 84.19411 * 21 12 10 23 23 O 1.42902 * 109.47077 * 64.99939 * 22 21 12 24 24 C 1.46922 * 120.62966 * 185.24490 * 6 4 2 25 25 N 1.46497 * 109.46999 * 240.00417 * 2 1 3 26 26 C 1.34427 * 126.82149 * 324.70355 * 25 2 1 27 27 N 1.30841 * 108.07706 * 179.89568 * 26 25 2 28 28 C 1.33243 * 109.82507 * 0.38476 * 27 26 25 29 29 N 1.30709 * 108.94938 * 359.76654 * 28 27 26 30 30 H 1.08997 * 109.47324 * 184.91755 * 1 2 3 31 31 H 1.09004 * 109.47086 * 304.91857 * 1 2 3 32 32 H 1.09001 * 109.46976 * 64.91404 * 1 2 3 33 33 H 1.08995 * 109.58785 * 353.37827 * 7 6 4 34 34 H 1.09007 * 109.58501 * 113.79849 * 7 6 4 35 35 H 1.09000 * 109.49401 * 65.31947 * 8 7 6 36 36 H 1.09002 * 109.49899 * 185.38513 * 8 7 6 37 37 H 1.09008 * 109.43233 * 301.30828 * 9 8 7 38 38 H 1.09000 * 109.48798 * 181.35352 * 9 8 7 39 39 H 0.96996 * 120.00244 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47076 * 324.19359 * 21 12 10 41 41 H 1.09003 * 109.47056 * 204.19516 * 21 12 10 42 42 H 1.08993 * 109.47083 * 185.00275 * 22 21 12 43 43 H 1.08997 * 109.47213 * 305.00171 * 22 21 12 44 44 H 0.96696 * 113.99899 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.59008 * 6.62306 * 24 6 4 46 46 H 1.09001 * 109.58281 * 246.19985 * 24 6 4 47 47 H 1.07993 * 125.96375 * 0.04876 * 26 25 2 48 48 H 1.08001 * 125.52325 * 179.72424 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3282 -1.5231 1.7914 6 7 3.2641 -0.4427 1.7075 7 6 4.0838 0.6199 1.1094 8 6 5.4459 0.0340 0.7243 9 6 6.0762 -0.6316 1.9496 10 6 5.1775 -1.7729 2.4312 11 1 5.0474 -2.4975 1.6274 12 7 5.7966 -2.4291 3.5855 13 6 6.0586 -1.7113 4.7219 14 1 6.5078 -0.7318 4.6504 15 6 5.7470 -2.2428 5.9658 16 7 5.2516 -3.4589 6.0565 17 14 6.0304 -1.2321 7.5111 18 1 4.8097 -0.4442 7.8181 19 1 6.3328 -2.1392 8.6472 20 1 7.1740 -0.3096 7.2962 21 6 6.1354 -3.8530 3.5241 22 6 7.5019 -4.0238 2.8574 23 8 8.5099 -3.4304 3.6784 24 6 3.8124 -1.2076 2.8358 25 7 2.0183 -0.6905 -1.1962 26 6 1.4587 -1.7551 -1.7967 27 7 2.1940 -2.0701 -2.8321 28 6 3.2313 -1.2384 -2.9196 29 7 3.1674 -0.3757 -1.9397 30 1 -0.3634 -1.0238 0.0881 31 1 -0.3633 0.5883 0.8427 32 1 -0.3633 0.4357 -0.9307 33 1 3.5876 1.0070 0.2195 34 1 4.2231 1.4243 1.8318 35 1 5.3133 -0.7072 -0.0639 36 1 6.0974 0.8319 0.3676 37 1 6.1862 0.1047 2.7459 38 1 7.0561 -1.0283 1.6842 39 1 5.0335 -3.8302 6.9256 40 1 5.3793 -4.3817 2.9436 41 1 6.1700 -4.2621 4.5338 42 1 7.7144 -5.0854 2.7313 43 1 7.4940 -3.5365 1.8825 44 1 9.4039 -3.5018 3.3168 45 1 3.1371 -2.0261 3.0849 46 1 3.9295 -0.5522 3.6989 47 1 0.5580 -2.2605 -1.4812 48 1 4.0005 -1.2721 -3.6770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692037046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = 43.025366 kcal Electronic energy + Delta-G solvation = -31389.442497 eV Core-core repulsion = 27289.835756 eV Total energy + Delta-G solvation = -4099.606742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27698 -40.07048 -37.70439 -36.17949 -35.11750 -34.57115 -32.26530 -31.47038 -31.24703 -30.21965 -29.58374 -27.34469 -25.96730 -24.55439 -23.93689 -22.48889 -22.12551 -21.85989 -20.55051 -19.80534 -19.00093 -17.59601 -17.16550 -16.54176 -16.41751 -16.01529 -15.49137 -15.05043 -14.95987 -14.49513 -14.35231 -14.29388 -14.00562 -13.62973 -13.53974 -13.33932 -13.07129 -12.76491 -12.63253 -12.55684 -12.39143 -12.29165 -11.87027 -11.70386 -11.30955 -11.20283 -10.83014 -10.72973 -10.69501 -10.59524 -10.42359 -10.15531 -10.10699 -10.01798 -9.88249 -9.81546 -9.64841 -9.36574 -9.03838 -8.41634 -8.35946 -6.44029 -5.68718 -3.42049 1.42897 1.77220 2.85959 2.90867 3.08490 3.39270 3.46112 3.47422 4.11375 4.21949 4.26148 4.49954 4.55319 4.72991 5.00312 5.06497 5.22161 5.24186 5.27022 5.30129 5.40943 5.46326 5.49570 5.69722 5.70480 5.82465 5.97282 6.04527 6.08033 6.11789 6.22066 6.30333 6.30842 6.34909 6.51480 6.58810 6.60975 6.68135 6.73741 6.90644 7.03948 7.05989 7.57543 7.78464 7.94252 7.96400 8.16928 8.49995 8.71834 9.26684 9.83749 10.42985 11.28490 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.003826 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.477527 B = 7315.982648 C = 8123.580192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.122 0.878 4 C 0.497 3.503 5 O -0.529 6.529 6 N -0.591 5.591 7 C 0.105 3.895 8 C -0.124 4.124 9 C -0.127 4.127 10 C 0.170 3.830 11 H 0.044 0.956 12 N -0.569 5.569 13 C -0.239 4.239 14 H 0.057 0.943 15 C 0.021 3.979 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.135 3.865 22 C 0.060 3.940 23 O -0.543 6.543 24 C 0.106 3.894 25 N -0.369 5.369 26 C 0.267 3.733 27 N -0.546 5.546 28 C 0.198 3.802 29 N -0.312 5.312 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.255 0.745 40 H 0.031 0.969 41 H 0.124 0.876 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.217 0.783 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 7.278 -15.363 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.140 0.860 4 C 0.281 3.719 5 O -0.405 6.405 6 N -0.323 5.323 7 C -0.018 4.018 8 C -0.163 4.163 9 C -0.166 4.166 10 C 0.062 3.938 11 H 0.063 0.937 12 N -0.288 5.288 13 C -0.369 4.369 14 H 0.074 0.926 15 C -0.179 4.179 16 N -0.539 5.539 17 Si 0.728 3.272 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.009 3.991 22 C -0.020 4.020 23 O -0.344 6.344 24 C -0.017 4.017 25 N -0.161 5.161 26 C -0.030 4.030 27 N -0.273 5.273 28 C -0.105 4.105 29 N -0.139 5.139 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.141 0.859 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.190 0.810 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.233 0.767 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.562 7.198 -14.511 17.127 hybrid contribution 0.673 0.319 0.530 0.914 sum -4.889 7.518 -13.981 16.610 Atomic orbital electron populations 1.22032 0.90024 1.05190 1.03834 1.21555 0.96867 0.98085 0.80452 0.85992 1.20421 0.82350 0.83720 0.85409 1.90737 1.55402 1.34542 1.59786 1.48395 1.14426 1.35406 1.34092 1.21849 0.92509 0.89620 0.97823 1.21820 0.95178 1.00304 0.99001 1.21997 0.99232 0.99323 0.96065 1.20606 0.89823 0.92845 0.90545 0.93733 1.43591 1.67508 1.05971 1.11726 1.18801 1.33873 1.00654 0.83567 0.92585 1.25419 0.97522 0.96446 0.98472 1.69626 1.46418 1.14432 1.23392 0.86364 0.77803 0.79810 0.83214 1.21400 1.21697 1.20393 1.21352 0.88106 0.85848 1.03797 1.23091 0.92761 0.93153 0.93005 1.86851 1.16890 1.81595 1.49080 1.22441 0.96481 0.96003 0.86739 1.50394 1.19306 1.24504 1.21869 1.26032 0.99335 0.87928 0.89685 1.70607 1.07246 1.28952 1.20522 1.26000 0.97198 0.90140 0.97119 1.78049 1.02699 1.25078 1.08107 0.89965 0.89207 0.90773 0.90129 0.91259 0.92033 0.91457 0.91569 0.92403 0.93484 0.95119 0.85863 0.96340 0.96447 0.80980 0.89603 0.90269 0.76718 0.76746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.37 37.16 0.31 -0.94 16 2 C 0.14 1.49 2.87 -69.09 -0.20 1.29 16 3 H 0.12 1.13 6.32 -51.93 -0.33 0.80 16 4 C 0.50 7.64 7.14 -10.99 -0.08 7.56 16 5 O -0.53 -9.92 15.41 5.55 0.09 -9.84 16 6 N -0.59 -9.51 2.97 -172.77 -0.51 -10.02 16 7 C 0.10 1.38 6.27 -3.71 -0.02 1.35 16 8 C -0.12 -1.74 6.08 -26.62 -0.16 -1.90 16 9 C -0.13 -2.24 5.10 -26.70 -0.14 -2.38 16 10 C 0.17 3.49 2.78 -67.81 -0.19 3.30 16 11 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 12 N -0.57 -13.65 2.33 -165.53 -0.39 -14.04 16 13 C -0.24 -6.28 7.87 -15.06 -0.12 -6.40 16 14 H 0.06 1.50 6.92 -52.49 -0.36 1.13 16 15 C 0.02 0.56 5.36 -17.43 -0.09 0.47 16 16 N -0.90 -25.49 10.78 55.49 0.60 -24.90 16 17 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C 0.13 3.22 5.54 -4.04 -0.02 3.20 16 22 C 0.06 1.22 7.39 37.16 0.27 1.50 16 23 O -0.54 -11.55 13.41 -35.23 -0.47 -12.03 16 24 C 0.11 2.14 5.75 -3.71 -0.02 2.12 16 25 N -0.37 -4.31 3.53 -57.25 -0.20 -4.51 16 26 C 0.27 3.04 11.79 -90.65 -1.07 1.97 16 27 N -0.55 -6.87 11.19 -15.83 -0.18 -7.05 16 28 C 0.20 2.26 13.03 -91.82 -1.20 1.07 16 29 N -0.31 -3.83 12.09 29.29 0.35 -3.47 16 30 H 0.08 0.72 7.03 -51.93 -0.37 0.36 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.91 4.89 -51.93 -0.25 0.66 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.25 7.13 -51.92 -0.37 0.88 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.12 3.39 5.24 -51.93 -0.27 3.12 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.35 5.41 9.12 45.56 0.42 5.83 16 45 H 0.09 2.00 7.04 -51.93 -0.37 1.63 16 46 H 0.08 1.73 7.50 -51.93 -0.39 1.34 16 47 H 0.22 1.80 7.47 -52.49 -0.39 1.41 16 48 H 0.22 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -33.45 384.01 -9.12 -42.57 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.45 Total: 8.61 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -2.72 Total: 12.21 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.33 Total: -63.99 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.39 Total: -21.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.45 -9.12 -42.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.598 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds