Wall clock time and date at job start Tue Mar 31 2020 20:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46669 * 2 1 4 4 C 1.50694 * 109.47217 * 119.99956 * 2 1 3 5 5 O 1.21282 * 119.99907 * 107.57874 * 4 2 1 6 6 N 1.34779 * 120.00385 * 287.57114 * 4 2 1 7 7 C 1.46927 * 120.63114 * 184.50337 * 6 4 2 8 8 C 1.53616 * 108.54131 * 126.37349 * 7 6 4 9 9 C 1.53042 * 109.24593 * 54.85257 * 8 7 6 10 10 C 1.53036 * 109.53883 * 298.51451 * 9 8 7 11 11 H 1.08997 * 109.49486 * 301.40569 * 10 9 8 12 12 N 1.46501 * 109.52283 * 181.32663 * 10 9 8 13 13 C 1.36933 * 120.00681 * 300.14538 * 12 10 9 14 14 H 1.07999 * 119.99693 * 321.23403 * 13 12 10 15 15 C 1.38807 * 120.00194 * 141.22936 * 13 12 10 16 16 N 1.31618 * 120.00256 * 340.54470 * 15 13 12 17 17 Si 1.86810 * 119.99732 * 160.54370 * 15 13 12 18 18 H 1.48495 * 109.46884 * 90.00089 * 17 15 13 19 19 H 1.48499 * 109.46734 * 209.99963 * 17 15 13 20 20 H 1.48495 * 109.46926 * 329.99874 * 17 15 13 21 21 C 1.46510 * 119.99646 * 120.14453 * 12 10 9 22 22 C 1.52998 * 109.46868 * 84.38432 * 21 12 10 23 23 O 1.42897 * 109.47188 * 65.00083 * 22 21 12 24 24 C 1.46924 * 120.62919 * 4.78650 * 6 4 2 25 25 N 1.46497 * 109.46967 * 240.00496 * 2 1 3 26 26 C 1.34429 * 126.82599 * 324.99165 * 25 2 1 27 27 N 1.30825 * 108.08084 * 180.20665 * 26 25 2 28 28 C 1.33243 * 109.82800 * 359.60941 * 27 26 25 29 29 N 1.30711 * 108.94717 * 0.39922 * 28 27 26 30 30 H 1.09004 * 109.46703 * 185.63929 * 1 2 3 31 31 H 1.09003 * 109.46960 * 305.63741 * 1 2 3 32 32 H 1.08994 * 109.47227 * 65.64027 * 1 2 3 33 33 H 1.09000 * 109.58619 * 246.20379 * 7 6 4 34 34 H 1.09001 * 109.58435 * 6.62915 * 7 6 4 35 35 H 1.09001 * 109.63634 * 294.86326 * 8 7 6 36 36 H 1.09004 * 109.45683 * 174.73999 * 8 7 6 37 37 H 1.08995 * 109.46124 * 178.48444 * 9 8 7 38 38 H 1.09008 * 109.45501 * 58.53474 * 9 8 7 39 39 H 0.97004 * 119.99974 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46926 * 204.38748 * 21 12 10 41 41 H 1.09000 * 109.47065 * 324.38482 * 21 12 10 42 42 H 1.09000 * 109.46700 * 185.00105 * 22 21 12 43 43 H 1.08998 * 109.47210 * 304.99979 * 22 21 12 44 44 H 0.96706 * 113.99854 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.58700 * 353.37118 * 24 6 4 46 46 H 1.08998 * 109.58650 * 113.64626 * 24 6 4 47 47 H 1.07998 * 125.95684 * 359.95184 * 26 25 2 48 48 H 1.08006 * 125.53026 * 180.19639 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5336 -1.8105 1.1333 6 7 1.9248 -0.1232 2.4388 7 6 2.4975 -0.7584 3.6334 8 6 3.4196 0.2535 4.3303 9 6 2.6360 1.5368 4.6157 10 6 2.1588 2.1491 3.2969 11 1 3.0188 2.3590 2.6610 12 7 1.4359 3.3941 3.5684 13 6 0.3134 3.3772 4.3524 14 1 -0.3896 2.5613 4.2714 15 6 0.0791 4.4086 5.2513 16 7 1.0705 5.1836 5.6368 17 14 -1.6436 4.6965 5.9140 18 1 -1.8353 3.9042 7.1552 19 1 -1.8233 6.1395 6.2152 20 1 -2.6415 4.2748 4.8984 21 6 1.9141 4.6574 3.0010 22 6 1.3771 4.8123 1.5767 23 8 -0.0465 4.9298 1.6145 24 6 1.2273 1.1614 2.5874 25 7 2.0183 -0.6905 -1.1962 26 6 1.4559 -1.7518 -1.7999 27 7 2.1959 -2.0722 -2.8301 28 6 3.2300 -1.2369 -2.9210 29 7 3.1667 -0.3748 -1.9406 30 1 -0.3633 -1.0228 0.1010 31 1 -0.3633 0.5988 0.8352 32 1 -0.3633 0.4238 -0.9361 33 1 1.6958 -1.0530 4.3106 34 1 3.0722 -1.6370 3.3401 35 1 4.2678 0.4813 3.6847 36 1 3.7795 -0.1692 5.2683 37 1 3.2794 2.2474 5.1343 38 1 1.7739 1.3043 5.2411 39 1 0.9068 5.9041 6.2653 40 1 1.5627 5.4871 3.6141 41 1 3.0039 4.6570 2.9804 42 1 1.8036 5.7070 1.1230 43 1 1.6541 3.9386 0.9869 44 1 -0.4560 5.0318 0.7444 45 1 0.9635 1.5499 1.6037 46 1 0.3227 1.0197 3.1787 47 1 0.5531 -2.2549 -1.4865 48 1 3.9981 -1.2691 -3.6797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692037047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:09 Heat of formation + Delta-G solvation = 42.755529 kcal Electronic energy + Delta-G solvation = -31327.125289 eV Core-core repulsion = 27227.506846 eV Total energy + Delta-G solvation = -4099.618443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19190 -40.22704 -37.75128 -36.29147 -35.22332 -34.63782 -32.49129 -31.56404 -31.35119 -30.09447 -29.56588 -27.36900 -26.04247 -24.52931 -24.25591 -22.62749 -21.99234 -21.82040 -20.73202 -19.89388 -19.09466 -17.45279 -17.28997 -16.73024 -16.55769 -15.80336 -15.53944 -15.17436 -14.88742 -14.67156 -14.50013 -14.29625 -14.07876 -13.90113 -13.77997 -13.25045 -12.96764 -12.92011 -12.80457 -12.52612 -12.46548 -12.42890 -12.04818 -11.66840 -11.43471 -11.11165 -11.07710 -10.87308 -10.74935 -10.49324 -10.39859 -10.28710 -10.08082 -10.05181 -9.95559 -9.80718 -9.71584 -9.43016 -9.24171 -8.63998 -8.39613 -6.63585 -5.84164 -3.41655 1.52997 2.04002 2.46742 2.92837 3.07703 3.34265 3.42717 3.46455 4.14949 4.23842 4.30361 4.47007 4.56268 4.73528 5.03350 5.10024 5.13312 5.15904 5.21696 5.27635 5.32407 5.36261 5.44589 5.56962 5.61394 5.69265 5.86974 5.92626 5.97030 6.03165 6.12296 6.14999 6.25565 6.31133 6.37560 6.41453 6.50118 6.62917 6.70146 6.71010 6.89463 7.10685 7.40852 7.54690 7.76265 8.00557 8.05810 8.32819 8.50646 9.10978 9.74322 10.29917 11.18991 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003661 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.559780 B = 7646.469028 C = 8351.795510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 H 0.129 0.871 4 C 0.506 3.494 5 O -0.540 6.540 6 N -0.595 5.595 7 C 0.115 3.885 8 C -0.133 4.133 9 C -0.120 4.120 10 C 0.164 3.836 11 H 0.050 0.950 12 N -0.567 5.567 13 C -0.245 4.245 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.147 3.853 22 C 0.059 3.941 23 O -0.544 6.544 24 C 0.088 3.912 25 N -0.359 5.359 26 C 0.272 3.728 27 N -0.550 5.550 28 C 0.196 3.804 29 N -0.316 5.316 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.350 0.650 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.213 0.787 48 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 -7.706 -10.268 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 H 0.147 0.853 4 C 0.291 3.709 5 O -0.418 6.418 6 N -0.328 5.328 7 C -0.007 4.007 8 C -0.172 4.172 9 C -0.160 4.160 10 C 0.055 3.945 11 H 0.068 0.932 12 N -0.287 5.287 13 C -0.375 4.375 14 H 0.074 0.926 15 C -0.179 4.179 16 N -0.533 5.533 17 Si 0.727 3.273 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.020 3.980 22 C -0.022 4.022 23 O -0.345 6.345 24 C -0.036 4.036 25 N -0.149 5.149 26 C -0.024 4.024 27 N -0.277 5.277 28 C -0.107 4.107 29 N -0.143 5.143 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.193 0.807 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.230 0.770 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.176 -7.828 -9.554 12.407 hybrid contribution -1.057 0.398 -0.033 1.130 sum 0.119 -7.430 -9.587 12.130 Atomic orbital electron populations 1.22304 0.89867 1.04686 1.05638 1.21223 0.96681 0.97882 0.80940 0.85322 1.20420 0.79702 0.86229 0.84569 1.90719 1.45310 1.19879 1.85866 1.48187 1.55169 1.22870 1.06571 1.21730 0.97194 0.96173 0.85614 1.22051 0.98245 0.96929 0.99973 1.21907 0.99995 0.94643 0.99433 1.20619 0.92231 0.87582 0.94019 0.93202 1.43650 1.28949 1.00424 1.55635 1.18692 0.96787 1.08405 1.13596 0.92593 1.25100 0.96811 0.99926 0.96019 1.69966 1.29583 1.20733 1.32993 0.86417 0.85285 0.77152 0.78486 1.21648 1.21715 1.20281 1.21003 0.94377 0.92485 0.90107 1.23092 0.81580 0.96183 1.01307 1.86850 1.19904 1.96356 1.31383 1.22731 0.97244 0.81831 1.01778 1.50098 1.18844 1.24465 1.21502 1.25848 0.99099 0.87758 0.89732 1.70554 1.07331 1.28768 1.21095 1.25959 0.97379 0.90160 0.97175 1.78059 1.02923 1.25304 1.08009 0.90776 0.87885 0.90002 0.91239 0.89750 0.92300 0.91248 0.91654 0.91126 0.93651 0.87953 0.94463 0.96034 0.96233 0.80720 0.90561 0.89929 0.77021 0.76762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.37 37.16 0.31 -1.18 16 2 C 0.14 1.70 2.91 -69.09 -0.20 1.50 16 3 H 0.13 1.57 7.24 -51.93 -0.38 1.19 16 4 C 0.51 7.42 7.03 -10.99 -0.08 7.35 16 5 O -0.54 -9.63 15.77 5.56 0.09 -9.55 16 6 N -0.60 -8.47 2.97 -172.51 -0.51 -8.99 16 7 C 0.11 1.59 6.45 -3.49 -0.02 1.57 16 8 C -0.13 -1.88 6.10 -26.39 -0.16 -2.04 16 9 C -0.12 -2.09 5.11 -26.69 -0.14 -2.23 16 10 C 0.16 2.89 2.78 -67.81 -0.19 2.71 16 11 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 12 N -0.57 -12.01 2.32 -165.53 -0.38 -12.39 16 13 C -0.25 -5.87 8.01 -15.06 -0.12 -5.99 16 14 H 0.06 1.34 6.76 -52.49 -0.35 0.99 16 15 C 0.02 0.55 4.94 -17.43 -0.09 0.47 16 16 N -0.89 -23.91 11.52 55.49 0.64 -23.27 16 17 Si 0.90 20.68 29.60 -169.99 -5.03 15.65 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.15 3.08 5.55 -4.04 -0.02 3.06 16 22 C 0.06 1.02 7.39 37.16 0.27 1.29 16 23 O -0.54 -9.97 13.40 -35.23 -0.47 -10.44 16 24 C 0.09 1.31 4.69 -3.71 -0.02 1.30 16 25 N -0.36 -4.81 3.12 -57.25 -0.18 -4.99 16 26 C 0.27 3.34 11.62 -90.66 -1.05 2.28 16 27 N -0.55 -7.43 11.19 -15.83 -0.18 -7.61 16 28 C 0.20 2.51 13.03 -91.81 -1.20 1.31 16 29 N -0.32 -4.64 12.70 29.29 0.37 -4.27 16 30 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 31 H 0.10 0.96 5.92 -51.93 -0.31 0.65 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.21 7.03 -51.93 -0.37 0.84 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.34 7.70 -51.92 -0.40 0.94 16 39 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.10 2.55 5.62 -51.93 -0.29 2.25 16 41 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.35 4.51 9.12 45.56 0.42 4.93 16 45 H 0.08 1.04 4.57 -51.93 -0.24 0.81 16 46 H 0.08 1.34 6.82 -51.93 -0.35 0.98 16 47 H 0.21 1.80 7.48 -52.49 -0.39 1.41 16 48 H 0.22 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -32.41 382.93 -8.98 -41.39 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.40 Total: 7.31 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -2.70 Total: 11.40 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.24 Total: -61.53 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.38 Total: -19.99 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.41 -8.98 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.145 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds