Wall clock time and date at job start Tue Mar 31 2020 20:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46669 * 2 1 4 4 C 1.50694 * 109.47217 * 119.99956 * 2 1 3 5 5 O 1.21282 * 119.99907 * 107.57874 * 4 2 1 6 6 N 1.34779 * 120.00385 * 287.57114 * 4 2 1 7 7 C 1.46927 * 120.63114 * 184.50337 * 6 4 2 8 8 C 1.53616 * 108.54131 * 126.37349 * 7 6 4 9 9 C 1.53042 * 109.24593 * 54.85257 * 8 7 6 10 10 C 1.53036 * 109.53883 * 298.51451 * 9 8 7 11 11 H 1.08997 * 109.49486 * 301.40569 * 10 9 8 12 12 N 1.46501 * 109.52283 * 181.32663 * 10 9 8 13 13 C 1.36933 * 120.00681 * 300.14538 * 12 10 9 14 14 H 1.07999 * 119.99693 * 321.23403 * 13 12 10 15 15 C 1.38807 * 120.00194 * 141.22936 * 13 12 10 16 16 N 1.31618 * 120.00256 * 340.54470 * 15 13 12 17 17 Si 1.86810 * 119.99732 * 160.54370 * 15 13 12 18 18 H 1.48495 * 109.46884 * 90.00089 * 17 15 13 19 19 H 1.48499 * 109.46734 * 209.99963 * 17 15 13 20 20 H 1.48495 * 109.46926 * 329.99874 * 17 15 13 21 21 C 1.46510 * 119.99646 * 120.14453 * 12 10 9 22 22 C 1.52998 * 109.46868 * 84.38432 * 21 12 10 23 23 O 1.42897 * 109.47188 * 65.00083 * 22 21 12 24 24 C 1.46924 * 120.62919 * 4.78650 * 6 4 2 25 25 N 1.46497 * 109.46967 * 240.00496 * 2 1 3 26 26 C 1.34429 * 126.82599 * 324.99165 * 25 2 1 27 27 N 1.30825 * 108.08084 * 180.20665 * 26 25 2 28 28 C 1.33243 * 109.82800 * 359.60941 * 27 26 25 29 29 N 1.30711 * 108.94717 * 0.39922 * 28 27 26 30 30 H 1.09004 * 109.46703 * 185.63929 * 1 2 3 31 31 H 1.09003 * 109.46960 * 305.63741 * 1 2 3 32 32 H 1.08994 * 109.47227 * 65.64027 * 1 2 3 33 33 H 1.09000 * 109.58619 * 246.20379 * 7 6 4 34 34 H 1.09001 * 109.58435 * 6.62915 * 7 6 4 35 35 H 1.09001 * 109.63634 * 294.86326 * 8 7 6 36 36 H 1.09004 * 109.45683 * 174.73999 * 8 7 6 37 37 H 1.08995 * 109.46124 * 178.48444 * 9 8 7 38 38 H 1.09008 * 109.45501 * 58.53474 * 9 8 7 39 39 H 0.97004 * 119.99974 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.46926 * 204.38748 * 21 12 10 41 41 H 1.09000 * 109.47065 * 324.38482 * 21 12 10 42 42 H 1.09000 * 109.46700 * 185.00105 * 22 21 12 43 43 H 1.08998 * 109.47210 * 304.99979 * 22 21 12 44 44 H 0.96706 * 113.99854 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.58700 * 353.37118 * 24 6 4 46 46 H 1.08998 * 109.58650 * 113.64626 * 24 6 4 47 47 H 1.07998 * 125.95684 * 359.95184 * 26 25 2 48 48 H 1.08006 * 125.53026 * 180.19639 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5336 -1.8105 1.1333 6 7 1.9248 -0.1232 2.4388 7 6 2.4975 -0.7584 3.6334 8 6 3.4196 0.2535 4.3303 9 6 2.6360 1.5368 4.6157 10 6 2.1588 2.1491 3.2969 11 1 3.0188 2.3590 2.6610 12 7 1.4359 3.3941 3.5684 13 6 0.3134 3.3772 4.3524 14 1 -0.3896 2.5613 4.2714 15 6 0.0791 4.4086 5.2513 16 7 1.0705 5.1836 5.6368 17 14 -1.6436 4.6965 5.9140 18 1 -1.8353 3.9042 7.1552 19 1 -1.8233 6.1395 6.2152 20 1 -2.6415 4.2748 4.8984 21 6 1.9141 4.6574 3.0010 22 6 1.3771 4.8123 1.5767 23 8 -0.0465 4.9298 1.6145 24 6 1.2273 1.1614 2.5874 25 7 2.0183 -0.6905 -1.1962 26 6 1.4559 -1.7518 -1.7999 27 7 2.1959 -2.0722 -2.8301 28 6 3.2300 -1.2369 -2.9210 29 7 3.1667 -0.3748 -1.9406 30 1 -0.3633 -1.0228 0.1010 31 1 -0.3633 0.5988 0.8352 32 1 -0.3633 0.4238 -0.9361 33 1 1.6958 -1.0530 4.3106 34 1 3.0722 -1.6370 3.3401 35 1 4.2678 0.4813 3.6847 36 1 3.7795 -0.1692 5.2683 37 1 3.2794 2.2474 5.1343 38 1 1.7739 1.3043 5.2411 39 1 0.9068 5.9041 6.2653 40 1 1.5627 5.4871 3.6141 41 1 3.0039 4.6570 2.9804 42 1 1.8036 5.7070 1.1230 43 1 1.6541 3.9386 0.9869 44 1 -0.4560 5.0318 0.7444 45 1 0.9635 1.5499 1.6037 46 1 0.3227 1.0197 3.1787 47 1 0.5531 -2.2549 -1.4865 48 1 3.9981 -1.2691 -3.6797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692037047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:08 Heat of formation + Delta-G solvation = 21.823136 kcal Electronic energy + Delta-G solvation = -31328.032985 eV Core-core repulsion = 27227.506846 eV Total energy + Delta-G solvation = -4100.526139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.14199 -41.40797 -39.14602 -37.66910 -36.21423 -36.14387 -33.83142 -33.17296 -32.34443 -31.31770 -30.70881 -28.98178 -27.10161 -25.94018 -25.56193 -23.84652 -23.17933 -22.80922 -22.05524 -21.36140 -20.26594 -18.56628 -18.47870 -18.09739 -18.06933 -16.86402 -16.84087 -16.51453 -16.14371 -16.02089 -15.78430 -15.45953 -15.34660 -15.20028 -14.98833 -14.52642 -14.38329 -14.10244 -13.95252 -13.80743 -13.57458 -13.34102 -13.22178 -13.04073 -12.77792 -12.67823 -12.54778 -12.49313 -12.33180 -11.98225 -11.76968 -11.60638 -11.56629 -11.45819 -11.24652 -11.05694 -10.79558 -10.62141 -10.53380 -10.36652 -9.76977 -8.41244 -7.71759 -5.30596 0.57861 1.11051 1.35529 1.49649 1.55095 1.61682 1.92821 2.02568 2.59946 3.10742 3.39852 3.42055 3.45781 3.62749 3.69016 3.84904 3.92559 3.95293 4.04841 4.15184 4.25405 4.27608 4.39615 4.50691 4.56632 4.59565 4.59845 4.67548 4.75748 4.84474 4.93105 4.97532 5.00556 5.02643 5.11511 5.15187 5.21172 5.41891 5.45139 5.47828 5.61943 5.78931 5.79372 5.85223 6.24530 6.58299 6.89110 7.08073 7.24349 7.31363 7.96027 8.48096 9.27130 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003661 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.559780 B = 7646.469028 C = 8351.795510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.129 0.871 4 C 0.507 3.493 5 O -0.572 6.572 6 N -0.593 5.593 7 C 0.115 3.885 8 C -0.120 4.120 9 C -0.113 4.113 10 C 0.161 3.839 11 H 0.053 0.947 12 N -0.577 5.577 13 C -0.225 4.225 14 H 0.059 0.941 15 C -0.030 4.030 16 N -0.923 5.923 17 Si 0.943 3.057 18 H -0.290 1.290 19 H -0.304 1.304 20 H -0.272 1.272 21 C 0.142 3.858 22 C 0.070 3.930 23 O -0.571 6.571 24 C 0.105 3.895 25 N -0.367 5.367 26 C 0.274 3.726 27 N -0.572 5.572 28 C 0.196 3.804 29 N -0.353 5.353 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.052 0.948 39 H 0.244 0.756 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.376 0.624 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.245 0.755 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -9.075 -12.092 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.147 0.853 4 C 0.294 3.706 5 O -0.452 6.452 6 N -0.325 5.325 7 C -0.007 4.007 8 C -0.159 4.159 9 C -0.152 4.152 10 C 0.054 3.946 11 H 0.071 0.929 12 N -0.298 5.298 13 C -0.356 4.356 14 H 0.076 0.924 15 C -0.226 4.226 16 N -0.568 5.568 17 Si 0.773 3.227 18 H -0.217 1.217 19 H -0.231 1.231 20 H -0.197 1.197 21 C 0.015 3.985 22 C -0.010 4.010 23 O -0.376 6.376 24 C -0.019 4.019 25 N -0.157 5.157 26 C -0.023 4.023 27 N -0.300 5.300 28 C -0.106 4.106 29 N -0.180 5.180 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.222 0.778 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.261 0.739 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.276 -9.210 -11.407 14.663 hybrid contribution -0.720 0.762 0.483 1.154 sum -0.444 -8.448 -10.923 13.816 Atomic orbital electron populations 1.22325 0.87208 1.05767 1.06533 1.21315 0.98560 0.97129 0.79396 0.85324 1.20858 0.78821 0.85820 0.85113 1.90707 1.46739 1.21418 1.86321 1.48168 1.54968 1.22445 1.06876 1.21754 0.97432 0.95818 0.85669 1.21931 0.97695 0.95326 1.00953 1.21774 0.99112 0.95592 0.98742 1.20747 0.92704 0.86816 0.94354 0.92897 1.43761 1.28816 1.01570 1.55610 1.18880 0.97263 1.07353 1.12102 0.92356 1.25629 0.98833 1.00856 0.97321 1.70097 1.30770 1.21556 1.34364 0.85670 0.82924 0.76034 0.78027 1.21743 1.23099 1.19659 1.20920 0.94563 0.91143 0.91840 1.22818 0.81391 0.98021 0.98755 1.86765 1.20320 1.96505 1.33999 1.22433 0.95858 0.81360 1.02203 1.50175 1.18782 1.25011 1.21736 1.26537 0.99580 0.87133 0.89016 1.70590 1.07987 1.29391 1.21991 1.26614 0.97614 0.89247 0.97158 1.78004 1.04156 1.26722 1.09097 0.89465 0.87955 0.88230 0.90203 0.89847 0.92419 0.89472 0.94470 0.92888 0.94672 0.91920 0.94379 0.94128 0.94083 0.77792 0.88711 0.90727 0.73891 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.37 71.98 0.60 -1.70 16 2 C 0.14 3.09 2.91 44.24 0.13 3.22 16 3 H 0.13 2.79 7.24 -2.39 -0.02 2.77 16 4 C 0.51 13.79 7.03 87.65 0.62 14.41 16 5 O -0.57 -19.41 15.77 -3.04 -0.05 -19.46 16 6 N -0.59 -15.66 2.97 -818.09 -2.43 -18.08 16 7 C 0.12 2.99 6.45 86.51 0.56 3.54 16 8 C -0.12 -3.24 6.10 30.82 0.19 -3.05 16 9 C -0.11 -3.89 5.11 30.62 0.16 -3.73 16 10 C 0.16 5.53 2.78 45.07 0.13 5.66 16 11 H 0.05 1.79 7.87 -2.39 -0.02 1.77 16 12 N -0.58 -24.20 2.32 -677.62 -1.57 -25.77 16 13 C -0.23 -10.72 8.01 84.03 0.67 -10.05 16 14 H 0.06 2.73 6.76 -2.91 -0.02 2.71 16 15 C -0.03 -1.55 4.94 84.86 0.42 -1.13 16 16 N -0.92 -51.09 11.52 21.65 0.25 -50.84 16 17 Si 0.94 42.90 29.60 68.60 2.03 44.93 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.14 5.93 5.55 86.38 0.48 6.41 16 22 C 0.07 2.29 7.39 71.98 0.53 2.82 16 23 O -0.57 -19.71 13.40 -148.98 -2.00 -21.70 16 24 C 0.11 2.92 4.69 86.36 0.41 3.33 16 25 N -0.37 -9.01 3.12 -335.04 -1.05 -10.05 16 26 C 0.27 6.01 11.62 180.36 2.10 8.10 16 27 N -0.57 -14.29 11.19 -204.00 -2.28 -16.57 16 28 C 0.20 4.67 13.03 180.77 2.36 7.02 16 29 N -0.35 -9.78 12.70 -61.24 -0.78 -10.56 16 30 H 0.09 1.04 7.52 -2.39 -0.02 1.03 16 31 H 0.10 1.53 5.92 -2.39 -0.01 1.51 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.25 7.03 -2.39 -0.02 2.23 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 2.00 7.70 -2.38 -0.02 1.98 16 39 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 40 H 0.06 3.19 5.62 -2.39 -0.01 3.18 16 41 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.38 8.57 9.12 -74.05 -0.68 7.90 16 45 H 0.09 2.31 4.57 -2.38 -0.01 2.30 16 46 H 0.07 2.26 6.82 -2.39 -0.02 2.24 16 47 H 0.25 3.32 7.48 -2.91 -0.02 3.30 16 48 H 0.25 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -71.03 382.93 1.78 -69.25 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.31 Total: 24.00 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 9.34 Total: 34.85 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -7.85 Total: -131.88 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.04 Total: -41.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.03 1.78 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692037047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.078 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds