Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46864 * 2 1 4 4 C 1.53004 * 109.46581 * 240.00172 * 2 1 3 5 5 N 1.46497 * 109.46612 * 184.99543 * 4 2 1 6 6 C 1.36944 * 119.99997 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99479 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00029 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00015 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46755 * 90.00839 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00422 * 10 8 6 13 13 H 1.48494 * 109.47238 * 330.00739 * 10 8 6 14 14 N 1.46496 * 109.47082 * 120.00436 * 2 1 3 15 15 C 1.46495 * 120.00628 * 59.99938 * 14 2 1 16 16 C 1.34774 * 119.99544 * 239.99775 * 14 2 1 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 14 2 19 19 N 1.46496 * 109.47106 * 179.97438 * 18 16 14 20 20 N 1.40317 * 126.32610 * 269.68463 * 19 18 16 21 21 C 1.28866 * 108.12032 * 180.08252 * 20 19 18 22 22 N 1.38013 * 108.81486 * 1.12624 * 21 20 19 23 23 C 1.34298 * 108.33613 * 358.31490 * 22 21 20 24 24 O 1.21808 * 126.32662 * 181.52839 * 23 22 21 25 25 C 1.46724 * 124.16006 * 177.45208 * 22 21 20 26 26 C 1.53294 * 108.65160 * 19.60906 * 25 22 21 27 27 C 1.53234 * 109.36754 * 308.14097 * 26 25 22 28 28 C 1.51120 * 127.46999 * 181.73881 * 21 20 19 29 29 H 1.09005 * 109.46503 * 299.99532 * 1 2 3 30 30 H 1.08992 * 109.46921 * 59.99834 * 1 2 3 31 31 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47097 * 304.99668 * 4 2 1 33 33 H 1.09001 * 109.47417 * 65.00127 * 4 2 1 34 34 H 0.96997 * 120.00642 * 0.02562 * 5 4 2 35 35 H 0.96999 * 120.00394 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47477 * 270.00204 * 15 14 2 37 37 H 1.09004 * 109.46971 * 29.99775 * 15 14 2 38 38 H 1.08993 * 109.47768 * 149.99839 * 15 14 2 39 39 H 1.09001 * 109.46953 * 299.99667 * 18 16 14 40 40 H 1.09000 * 109.47318 * 59.99264 * 18 16 14 41 41 H 1.08997 * 109.60699 * 139.35592 * 25 22 21 42 42 H 1.09000 * 109.60876 * 259.69139 * 25 22 21 43 43 H 1.08994 * 109.48942 * 68.11419 * 26 25 22 44 44 H 1.08997 * 109.48604 * 188.17909 * 26 25 22 45 45 H 1.08994 * 109.53977 * 190.53581 * 27 26 25 46 46 H 1.08995 * 109.54551 * 310.80979 * 27 26 25 47 47 H 1.09005 * 109.74645 * 78.00881 * 28 21 20 48 48 H 1.08997 * 109.78732 * 317.29915 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4388 -2.2069 7 1 3.6466 -1.8439 -3.0517 8 6 5.5672 -1.5388 -2.1512 9 7 6.2244 -2.1270 -3.1281 10 14 6.4962 -0.8373 -0.6903 11 1 6.6270 -1.8793 0.3597 12 1 7.8472 -0.4012 -1.1259 13 1 5.7529 0.3261 -0.1433 14 7 2.0184 -0.6907 1.1961 15 6 1.6646 -2.0932 1.4279 16 6 2.7933 -0.0357 2.0832 17 8 3.0859 1.1256 1.8916 18 6 3.2962 -0.7463 3.3134 19 7 4.1105 0.1744 4.1105 20 7 5.4962 0.3659 4.0013 21 6 5.8479 1.2518 4.8686 22 7 4.7328 1.6455 5.5801 23 6 3.6668 0.9915 5.0907 24 8 2.5130 1.1127 5.4619 25 6 4.7600 2.6044 6.6903 26 6 6.0510 3.4258 6.5971 27 6 7.2494 2.4776 6.4835 28 6 7.2319 1.8125 5.1005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1371 34 1 3.9824 -0.4627 -0.4318 35 1 7.1910 -2.1972 -3.0890 36 1 0.7377 -2.1445 1.9993 37 1 1.5296 -2.5969 0.4707 38 1 2.4630 -2.5819 1.9862 39 1 2.4486 -1.0892 3.9069 40 1 3.9018 -1.6025 3.0164 41 1 3.8984 3.2684 6.6213 42 1 4.7330 2.0673 7.6384 43 1 6.0107 4.0680 5.7174 44 1 6.1567 4.0397 7.4915 45 1 8.1738 3.0423 6.6048 46 1 7.1837 1.7125 7.2569 47 1 7.4632 2.5516 4.3334 48 1 7.9662 1.0075 5.0697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698862662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = 32.002104 kcal Electronic energy + Delta-G solvation = -30796.943013 eV Core-core repulsion = 26696.858267 eV Total energy + Delta-G solvation = -4100.084746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.64686 -39.88724 -37.84890 -36.98540 -36.44078 -34.19127 -33.67053 -32.76584 -31.85679 -30.53258 -29.13868 -27.91780 -26.76787 -25.90571 -24.72809 -22.91621 -22.46669 -21.88499 -20.88095 -20.01280 -19.02562 -17.67411 -17.52046 -17.25971 -16.76984 -16.09475 -16.01422 -15.59478 -15.30440 -14.82700 -14.65107 -14.61391 -14.48345 -14.02722 -13.74070 -13.49952 -13.25058 -13.09956 -12.86317 -12.62663 -12.38722 -12.29046 -12.26675 -12.09464 -12.03121 -11.98073 -11.72615 -11.55903 -11.42568 -11.38123 -10.90891 -10.76473 -10.55950 -10.38067 -10.23045 -10.05698 -9.55524 -9.55052 -8.85806 -8.52900 -8.43705 -7.18755 -5.73452 -3.08357 1.58929 1.89412 2.62118 2.73578 2.83718 3.23011 3.44494 3.51626 3.59493 3.96743 4.17701 4.25231 4.35567 4.52901 4.64090 4.65780 4.84974 4.94844 5.02433 5.05325 5.09621 5.21922 5.25613 5.28111 5.32749 5.33851 5.41393 5.49195 5.53819 5.57536 5.60803 5.69415 5.77758 5.81096 5.84615 5.96070 6.02602 6.07274 6.24993 6.40664 6.43965 6.61879 6.84746 7.51187 7.59352 8.00257 8.02242 8.30740 8.45766 9.25471 9.98707 10.18945 11.44586 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.004112 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.258394 B = 6807.051319 C = 8610.912902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.099 0.901 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.007 3.993 9 N -0.934 5.934 10 Si 0.877 3.123 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.273 1.273 14 N -0.597 5.597 15 C 0.074 3.926 16 C 0.497 3.503 17 O -0.527 6.527 18 C 0.143 3.857 19 N -0.437 5.437 20 N -0.262 5.262 21 C 0.274 3.726 22 N -0.556 5.556 23 C 0.658 3.342 24 O -0.558 6.558 25 C 0.132 3.868 26 C -0.138 4.138 27 C -0.123 4.123 28 C -0.042 4.042 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 6.711 23.016 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.117 0.883 4 C 0.021 3.979 5 N -0.398 5.398 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.582 5.582 10 Si 0.707 3.293 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.199 1.199 14 N -0.331 5.331 15 C -0.069 4.069 16 C 0.283 3.717 17 O -0.402 6.402 18 C 0.018 3.982 19 N -0.256 5.256 20 N -0.083 5.083 21 C -0.005 4.005 22 N -0.286 5.286 23 C 0.358 3.642 24 O -0.432 6.432 25 C 0.011 3.989 26 C -0.176 4.176 27 C -0.161 4.161 28 C -0.081 4.081 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.451 6.627 22.184 23.408 hybrid contribution 0.429 0.740 1.292 1.549 sum -3.022 7.367 23.476 24.789 Atomic orbital electron populations 1.22035 0.94641 1.02303 1.02227 1.21476 0.93779 0.98457 0.84309 0.88302 1.20984 0.85780 0.97403 0.93779 1.42669 1.01250 1.71169 1.24725 1.19041 0.89898 1.29134 0.99248 0.89227 1.24627 0.96155 1.00511 0.97581 1.69705 1.07287 1.48686 1.32562 0.86636 0.79796 0.79645 0.83184 1.20955 1.21723 1.19933 1.47719 1.50430 1.12492 1.22464 1.21837 1.00157 0.81493 1.03432 1.20794 0.78723 0.87538 0.84641 1.90713 1.56725 1.16762 1.76029 1.21308 0.95302 0.90680 0.90894 1.48295 1.04328 1.39390 1.33568 1.76876 0.92523 1.18422 1.20479 1.24281 0.92095 0.93737 0.90389 1.46017 1.07723 1.41553 1.33305 1.16408 0.84745 0.81274 0.81781 1.91051 1.15222 1.70071 1.66854 1.21763 1.00121 0.90111 0.86939 1.21990 0.93046 0.98182 1.04333 1.21711 0.99123 0.99156 0.96105 1.20518 0.87317 1.01297 0.98989 0.92581 0.91216 0.92129 0.95169 0.94509 0.80378 0.93125 0.92581 0.89562 0.91325 0.85862 0.85646 0.89128 0.90091 0.90307 0.88914 0.89383 0.90717 0.87807 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.20 37.16 0.34 -1.63 16 2 C 0.12 2.09 2.80 -67.93 -0.19 1.90 16 3 H 0.10 1.94 6.90 -51.93 -0.36 1.59 16 4 C 0.15 2.93 5.50 -4.04 -0.02 2.91 16 5 N -0.75 -18.82 5.24 -59.91 -0.31 -19.13 16 6 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -30.02 13.97 55.49 0.78 -29.25 16 10 Si 0.88 23.73 27.73 -169.99 -4.71 19.02 16 11 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.27 -7.56 6.52 56.52 0.37 -7.19 16 14 N -0.60 -9.74 2.24 -173.93 -0.39 -10.13 16 15 C 0.07 0.90 9.30 59.84 0.56 1.46 16 16 C 0.50 9.21 7.45 -10.98 -0.08 9.13 16 17 O -0.53 -11.97 15.76 5.56 0.09 -11.88 16 18 C 0.14 2.20 5.42 -5.19 -0.03 2.17 16 19 N -0.44 -7.51 3.12 -66.40 -0.21 -7.71 16 20 N -0.26 -4.39 12.51 33.13 0.41 -3.98 16 21 C 0.27 3.56 7.73 -153.76 -1.19 2.37 16 22 N -0.56 -7.35 3.13 -117.55 -0.37 -7.72 16 23 C 0.66 11.26 8.64 -87.05 -0.75 10.50 16 24 O -0.56 -10.76 17.83 5.09 0.09 -10.67 16 25 C 0.13 1.12 6.88 -3.77 -0.03 1.10 16 26 C -0.14 -0.74 5.94 -26.46 -0.16 -0.90 16 27 C -0.12 -0.60 5.96 -26.37 -0.16 -0.75 16 28 C -0.04 -0.32 6.32 -27.44 -0.17 -0.50 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 32 H 0.03 0.57 6.88 -51.93 -0.36 0.21 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.36 9.42 4.93 -40.82 -0.20 9.22 16 35 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.11 6.53 -51.93 -0.34 0.77 16 38 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 39 H 0.12 1.52 8.08 -51.93 -0.42 1.10 16 40 H 0.13 1.71 7.40 -51.93 -0.38 1.32 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -41.60 388.20 -8.36 -49.96 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.45 Total: 5.02 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: -2.13 Total: 20.63 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -0.09 Total: -77.92 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.18 Total: -22.55 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.71 Total: 19.02 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -41.60 -8.36 -49.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698862662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.959 kcal (2) G-P(sol) polarization free energy of solvation -41.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds