Wall clock time and date at job start Tue Mar 31 2020 20:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46864 * 2 1 4 4 C 1.53004 * 109.46581 * 240.00172 * 2 1 3 5 5 N 1.46497 * 109.46612 * 184.99543 * 4 2 1 6 6 C 1.36944 * 119.99997 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99479 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00029 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00015 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46755 * 90.00839 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00422 * 10 8 6 13 13 H 1.48494 * 109.47238 * 330.00739 * 10 8 6 14 14 N 1.46496 * 109.47082 * 120.00436 * 2 1 3 15 15 C 1.46495 * 120.00628 * 59.99938 * 14 2 1 16 16 C 1.34774 * 119.99544 * 239.99775 * 14 2 1 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 14 2 19 19 N 1.46496 * 109.47106 * 179.97438 * 18 16 14 20 20 N 1.40317 * 126.32610 * 269.68463 * 19 18 16 21 21 C 1.28866 * 108.12032 * 180.08252 * 20 19 18 22 22 N 1.38013 * 108.81486 * 1.12624 * 21 20 19 23 23 C 1.34298 * 108.33613 * 358.31490 * 22 21 20 24 24 O 1.21808 * 126.32662 * 181.52839 * 23 22 21 25 25 C 1.46724 * 124.16006 * 177.45208 * 22 21 20 26 26 C 1.53294 * 108.65160 * 19.60906 * 25 22 21 27 27 C 1.53234 * 109.36754 * 308.14097 * 26 25 22 28 28 C 1.51120 * 127.46999 * 181.73881 * 21 20 19 29 29 H 1.09005 * 109.46503 * 299.99532 * 1 2 3 30 30 H 1.08992 * 109.46921 * 59.99834 * 1 2 3 31 31 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47097 * 304.99668 * 4 2 1 33 33 H 1.09001 * 109.47417 * 65.00127 * 4 2 1 34 34 H 0.96997 * 120.00642 * 0.02562 * 5 4 2 35 35 H 0.96999 * 120.00394 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47477 * 270.00204 * 15 14 2 37 37 H 1.09004 * 109.46971 * 29.99775 * 15 14 2 38 38 H 1.08993 * 109.47768 * 149.99839 * 15 14 2 39 39 H 1.09001 * 109.46953 * 299.99667 * 18 16 14 40 40 H 1.09000 * 109.47318 * 59.99264 * 18 16 14 41 41 H 1.08997 * 109.60699 * 139.35592 * 25 22 21 42 42 H 1.09000 * 109.60876 * 259.69139 * 25 22 21 43 43 H 1.08994 * 109.48942 * 68.11419 * 26 25 22 44 44 H 1.08997 * 109.48604 * 188.17909 * 26 25 22 45 45 H 1.08994 * 109.53977 * 190.53581 * 27 26 25 46 46 H 1.08995 * 109.54551 * 310.80979 * 27 26 25 47 47 H 1.09005 * 109.74645 * 78.00881 * 28 21 20 48 48 H 1.08997 * 109.78732 * 317.29915 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4388 -2.2069 7 1 3.6466 -1.8439 -3.0517 8 6 5.5672 -1.5388 -2.1512 9 7 6.2244 -2.1270 -3.1281 10 14 6.4962 -0.8373 -0.6903 11 1 6.6270 -1.8793 0.3597 12 1 7.8472 -0.4012 -1.1259 13 1 5.7529 0.3261 -0.1433 14 7 2.0184 -0.6907 1.1961 15 6 1.6646 -2.0932 1.4279 16 6 2.7933 -0.0357 2.0832 17 8 3.0859 1.1256 1.8916 18 6 3.2962 -0.7463 3.3134 19 7 4.1105 0.1744 4.1105 20 7 5.4962 0.3659 4.0013 21 6 5.8479 1.2518 4.8686 22 7 4.7328 1.6455 5.5801 23 6 3.6668 0.9915 5.0907 24 8 2.5130 1.1127 5.4619 25 6 4.7600 2.6044 6.6903 26 6 6.0510 3.4258 6.5971 27 6 7.2494 2.4776 6.4835 28 6 7.2319 1.8125 5.1005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1371 34 1 3.9824 -0.4627 -0.4318 35 1 7.1910 -2.1972 -3.0890 36 1 0.7377 -2.1445 1.9993 37 1 1.5296 -2.5969 0.4707 38 1 2.4630 -2.5819 1.9862 39 1 2.4486 -1.0892 3.9069 40 1 3.9018 -1.6025 3.0164 41 1 3.8984 3.2684 6.6213 42 1 4.7330 2.0673 7.6384 43 1 6.0107 4.0680 5.7174 44 1 6.1567 4.0397 7.4915 45 1 8.1738 3.0423 6.6048 46 1 7.1837 1.7125 7.2569 47 1 7.4632 2.5516 4.3334 48 1 7.9662 1.0075 5.0697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698862662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:52 Heat of formation + Delta-G solvation = 2.381699 kcal Electronic energy + Delta-G solvation = -30798.227450 eV Core-core repulsion = 26696.858267 eV Total energy + Delta-G solvation = -4101.369183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.72582 -41.24067 -38.90071 -38.21732 -37.70211 -36.02067 -34.66786 -33.93088 -33.42877 -32.26517 -29.98928 -28.97261 -27.86893 -27.64189 -25.52747 -24.17559 -23.71195 -23.30173 -22.23206 -20.74104 -20.47972 -19.57072 -18.88027 -18.38377 -17.89350 -17.27846 -17.12566 -16.83060 -16.63224 -16.57191 -15.85657 -15.66557 -15.26829 -15.20892 -14.91550 -14.84400 -14.44498 -14.32401 -14.19376 -14.03220 -13.83410 -13.66762 -13.48396 -13.26814 -13.17430 -13.05689 -12.96292 -12.91108 -12.46446 -12.30097 -12.12037 -11.93872 -11.91944 -11.90170 -11.84019 -11.50222 -11.38620 -11.06164 -10.79096 -9.74023 -9.72738 -9.34528 -8.09181 -5.40202 0.52601 0.87111 1.27821 1.31258 1.36961 1.41121 1.41773 1.82561 2.04496 2.39408 3.13510 3.22653 3.29388 3.50781 3.58550 3.70137 3.80056 3.83102 3.91574 3.94054 4.17907 4.24467 4.29867 4.31782 4.33622 4.37131 4.48085 4.66299 4.72164 4.74727 4.79302 4.82511 4.83792 4.86058 4.94497 4.99156 5.01631 5.07498 5.12884 5.24181 5.30603 5.48377 5.55143 5.70770 6.15796 6.22987 6.48361 6.79808 6.96648 7.01037 7.78522 7.96193 9.12283 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.004112 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.258394 B = 6807.051319 C = 8610.912902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.065 0.935 4 C 0.145 3.855 5 N -0.758 5.758 6 C -0.227 4.227 7 H 0.069 0.931 8 C -0.050 4.050 9 N -0.976 5.976 10 Si 0.942 3.058 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.287 1.287 14 N -0.596 5.596 15 C 0.064 3.936 16 C 0.487 3.513 17 O -0.581 6.581 18 C 0.142 3.858 19 N -0.447 5.447 20 N -0.314 5.314 21 C 0.286 3.714 22 N -0.553 5.553 23 C 0.642 3.358 24 O -0.592 6.592 25 C 0.119 3.881 26 C -0.131 4.131 27 C -0.114 4.114 28 C -0.046 4.046 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 6.844 25.580 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.084 0.916 4 C 0.019 3.981 5 N -0.403 5.403 6 C -0.358 4.358 7 H 0.087 0.913 8 C -0.242 4.242 9 N -0.627 5.627 10 Si 0.772 3.228 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.214 1.214 14 N -0.328 5.328 15 C -0.077 4.077 16 C 0.274 3.726 17 O -0.461 6.461 18 C 0.017 3.983 19 N -0.265 5.265 20 N -0.136 5.136 21 C 0.008 3.992 22 N -0.281 5.281 23 C 0.341 3.659 24 O -0.469 6.469 25 C -0.001 4.001 26 C -0.168 4.168 27 C -0.152 4.152 28 C -0.085 4.085 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.191 0.809 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.285 6.740 24.774 25.884 hybrid contribution 0.287 0.725 0.454 0.902 sum -2.998 7.465 25.229 26.480 Atomic orbital electron populations 1.21949 0.90920 1.04057 1.03004 1.21341 0.96449 0.96306 0.83518 0.91633 1.21215 0.82833 0.98738 0.95335 1.42753 1.03423 1.70620 1.23479 1.19081 0.90028 1.27575 0.99135 0.91342 1.25235 0.97168 1.01825 1.00004 1.69829 1.07514 1.50812 1.34515 0.85621 0.78208 0.78544 0.80468 1.19635 1.21646 1.21423 1.47891 1.49458 1.13961 1.21510 1.22166 1.02490 0.78974 1.04069 1.21420 0.78330 0.87157 0.85649 1.90674 1.58873 1.19144 1.77431 1.21507 0.96391 0.90439 0.89973 1.48491 1.04854 1.39598 1.33570 1.76846 0.92328 1.21324 1.23079 1.25319 0.93652 0.91798 0.88407 1.46340 1.06787 1.41229 1.33717 1.16730 0.85184 0.81799 0.82156 1.90996 1.16603 1.71295 1.68054 1.22235 1.01818 0.89829 0.86238 1.22037 0.91367 0.97881 1.05530 1.21750 1.00096 0.99269 0.94082 1.20925 0.84427 1.01963 1.01213 0.92251 0.90045 0.89812 0.93145 0.94532 0.80898 0.93205 0.88985 0.89914 0.89867 0.83174 0.84146 0.90059 0.88190 0.91266 0.85557 0.86313 0.89915 0.87182 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.20 71.99 0.66 -2.65 16 2 C 0.13 4.25 2.80 45.00 0.13 4.38 16 3 H 0.07 2.65 6.90 -2.39 -0.02 2.63 16 4 C 0.15 5.63 5.50 86.38 0.48 6.10 16 5 N -0.76 -37.89 5.24 -343.45 -1.80 -39.69 16 6 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 7 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16 8 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 9 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 10 Si 0.94 50.17 27.73 68.60 1.90 52.07 16 11 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 13 H -0.29 -15.86 6.52 99.48 0.65 -15.21 16 14 N -0.60 -18.85 2.24 -822.59 -1.85 -20.70 16 15 C 0.06 1.41 9.30 127.77 1.19 2.60 16 16 C 0.49 18.12 7.45 87.66 0.65 18.77 16 17 O -0.58 -27.35 15.76 -3.02 -0.05 -27.40 16 18 C 0.14 4.29 5.42 85.64 0.46 4.75 16 19 N -0.45 -15.48 3.12 -481.99 -1.50 -16.99 16 20 N -0.31 -10.53 12.51 -49.11 -0.61 -11.14 16 21 C 0.29 7.22 7.73 137.75 1.06 8.28 16 22 N -0.55 -14.37 3.13 -644.25 -2.02 -16.39 16 23 C 0.64 22.27 8.64 179.10 1.55 23.82 16 24 O -0.59 -23.34 17.83 -4.69 -0.08 -23.42 16 25 C 0.12 1.85 6.88 86.44 0.59 2.44 16 26 C -0.13 -1.02 5.94 30.77 0.18 -0.83 16 27 C -0.11 -0.68 5.96 30.83 0.18 -0.50 16 28 C -0.05 -0.61 6.32 30.14 0.19 -0.42 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 32 H 0.05 1.79 6.88 -2.39 -0.02 1.77 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.36 18.68 4.93 -92.71 -0.46 18.22 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.90 6.53 -2.38 -0.02 1.89 16 38 H 0.08 1.59 6.44 -2.39 -0.02 1.58 16 39 H 0.15 3.55 8.08 -2.39 -0.02 3.53 16 40 H 0.14 3.70 7.40 -2.39 -0.02 3.69 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 44 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.08 0.43 8.11 -2.39 -0.02 0.41 16 47 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -94.56 388.20 3.43 -91.13 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.46 Total: 24.10 kcal Atomic # 6 Polarization: 42.99 SS G_CDS: 8.68 Total: 51.67 kcal Atomic # 7 Polarization: -160.67 SS G_CDS: -7.48 Total: -168.15 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.13 Total: -50.82 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.90 Total: 52.07 kcal Total: -94.56 3.43 -91.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698862662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.511 kcal (2) G-P(sol) polarization free energy of solvation -94.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds