Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.36934 * 120.00312 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00307 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00086 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47202 * 60.00005 * 10 8 6 12 12 H 1.48508 * 109.47273 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47471 * 299.99780 * 10 8 6 14 14 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 15 15 C 1.46505 * 120.00078 * 299.99998 * 14 2 1 16 16 C 1.34771 * 120.00141 * 119.99854 * 14 2 1 17 17 O 1.21281 * 120.00208 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00070 * 180.02562 * 16 14 2 19 19 N 1.46501 * 109.47232 * 179.97438 * 18 16 14 20 20 N 1.40310 * 126.32630 * 269.69308 * 19 18 16 21 21 C 1.28873 * 108.12266 * 180.02562 * 20 19 18 22 22 N 1.38010 * 108.81255 * 1.11971 * 21 20 19 23 23 C 1.34301 * 108.33303 * 358.31878 * 22 21 20 24 24 O 1.21817 * 126.32299 * 181.52929 * 23 22 21 25 25 C 1.46717 * 124.16129 * 177.45337 * 22 21 20 26 26 C 1.53294 * 108.65382 * 19.61064 * 25 22 21 27 27 C 1.53227 * 109.36440 * 308.14266 * 26 25 22 28 28 C 1.51117 * 127.47130 * 181.73949 * 21 20 19 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 35 35 H 0.96994 * 120.00308 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47130 * 89.99894 * 15 14 2 37 37 H 1.08997 * 109.47212 * 209.99646 * 15 14 2 38 38 H 1.09003 * 109.46772 * 330.00259 * 15 14 2 39 39 H 1.08999 * 109.47401 * 300.00043 * 18 16 14 40 40 H 1.09002 * 109.47014 * 60.00321 * 18 16 14 41 41 H 1.09004 * 109.60669 * 139.35877 * 25 22 21 42 42 H 1.09000 * 109.60867 * 259.69246 * 25 22 21 43 43 H 1.08997 * 109.48737 * 68.11077 * 26 25 22 44 44 H 1.08997 * 109.49074 * 188.17194 * 26 25 22 45 45 H 1.09002 * 109.54084 * 190.52959 * 27 26 25 46 46 H 1.08994 * 109.54861 * 310.80350 * 27 26 25 47 47 H 1.08994 * 109.75140 * 78.00090 * 28 21 20 48 48 H 1.09003 * 109.78848 * 317.29397 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8448 3.0511 8 6 5.5673 -1.5381 2.1512 9 7 6.2220 -1.0430 1.1222 10 14 6.5001 -2.3729 3.5376 11 1 6.0443 -3.7806 3.6636 12 1 7.9550 -2.3479 3.2409 13 1 6.2428 -1.6535 4.8110 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4281 16 6 2.7932 -0.0357 -2.0834 17 8 3.0858 1.1256 -1.8917 18 6 3.2950 -0.7459 -3.3141 19 7 4.1084 0.1750 -4.1119 20 7 3.6476 1.0195 -5.1333 21 6 4.6560 1.6740 -5.5977 22 7 5.7941 1.2716 -4.9288 23 6 5.4416 0.3648 -4.0030 24 8 6.1864 -0.1851 -3.2112 25 6 7.1433 1.7640 -5.2284 26 6 7.0237 3.0841 -5.9984 27 6 6.0853 2.8915 -7.1943 28 6 4.6482 2.7271 -6.6814 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4622 0.4318 35 1 7.1886 -1.1126 1.0833 36 1 0.7375 -2.1444 -1.9994 37 1 2.4628 -2.5819 -1.9865 38 1 1.5295 -2.5969 -0.4708 39 1 3.9003 -1.6025 -3.0179 40 1 2.4469 -1.0880 -3.9073 41 1 7.6866 1.9311 -4.2983 42 1 7.6740 1.0305 -5.8353 43 1 6.6207 3.8538 -5.3402 44 1 8.0081 3.3882 -6.3539 45 1 6.1422 3.7630 -7.8465 46 1 6.3789 2.0000 -7.7484 47 1 4.2922 3.6730 -6.2733 48 1 3.9994 2.4112 -7.4984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698862663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = 31.811690 kcal Electronic energy + Delta-G solvation = -30697.927809 eV Core-core repulsion = 26597.834806 eV Total energy + Delta-G solvation = -4100.093003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38964 -39.64437 -37.59550 -36.70191 -36.20583 -33.94815 -33.46419 -32.56874 -31.69125 -30.02323 -28.94513 -27.69745 -26.58594 -25.53880 -24.54201 -22.72828 -22.59435 -21.84100 -20.65925 -19.83274 -18.74978 -17.41133 -17.02584 -16.95624 -16.53374 -15.85275 -15.76814 -15.37219 -15.07645 -14.66093 -14.53153 -14.49632 -14.32067 -13.68427 -13.50724 -13.28137 -13.26638 -12.96922 -12.84893 -12.35734 -12.21270 -12.15803 -12.09330 -11.86630 -11.80785 -11.75935 -11.41243 -11.36416 -11.30401 -11.22826 -10.75677 -10.67940 -10.42359 -10.15519 -9.98438 -9.90260 -9.58195 -9.31360 -8.75975 -8.24868 -8.22101 -6.78640 -5.58311 -2.90463 1.82606 2.04882 2.92840 3.02865 3.07373 3.45001 3.51354 3.55006 3.57661 4.15142 4.29722 4.38700 4.51930 4.67854 4.77530 4.83738 5.02012 5.07080 5.24040 5.25211 5.31728 5.35365 5.40045 5.43762 5.46868 5.47734 5.54100 5.62695 5.68013 5.70968 5.74648 5.81774 5.94941 6.04685 6.10521 6.15644 6.25358 6.31379 6.44604 6.56886 6.66326 6.78646 7.04281 7.74134 7.80093 7.82182 8.36533 8.56040 8.56926 9.67328 10.26407 10.61243 11.62026 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003699 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.168398 B = 7567.754262 C = 9380.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.098 0.902 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.249 4.249 7 H 0.067 0.933 8 C -0.010 4.010 9 N -0.919 5.919 10 Si 0.904 3.096 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.595 5.595 15 C 0.078 3.922 16 C 0.503 3.497 17 O -0.526 6.526 18 C 0.149 3.851 19 N -0.439 5.439 20 N -0.273 5.273 21 C 0.272 3.728 22 N -0.557 5.557 23 C 0.652 3.348 24 O -0.527 6.527 25 C 0.131 3.869 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.038 4.038 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 5.729 -21.091 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.116 0.884 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.380 4.380 7 H 0.085 0.915 8 C -0.207 4.207 9 N -0.566 5.566 10 Si 0.735 3.265 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.214 1.214 14 N -0.329 5.329 15 C -0.065 4.065 16 C 0.289 3.711 17 O -0.402 6.402 18 C 0.023 3.977 19 N -0.259 5.259 20 N -0.095 5.095 21 C -0.007 4.007 22 N -0.288 5.288 23 C 0.352 3.648 24 O -0.397 6.397 25 C 0.009 3.991 26 C -0.175 4.175 27 C -0.161 4.161 28 C -0.077 4.077 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.119 0.881 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.000 5.627 -20.245 22.148 hybrid contribution 1.453 -0.451 0.895 1.765 sum -5.547 5.176 -19.351 20.785 Atomic orbital electron populations 1.22039 0.95101 1.02033 1.01972 1.21386 0.93211 0.98494 0.84563 0.88402 1.20989 0.87272 0.96658 0.93522 1.42301 0.99576 1.70145 1.25237 1.19105 0.89400 1.30164 0.99305 0.91454 1.24788 0.96503 1.01544 0.97847 1.69700 1.07280 1.49873 1.29770 0.86339 0.79171 0.79224 0.81808 1.21369 1.21755 1.21389 1.47622 1.50681 1.12209 1.22398 1.21763 0.99778 0.81886 1.03077 1.20727 0.78356 0.87450 0.84556 1.90703 1.56389 1.16976 1.76082 1.21231 0.96250 0.90192 0.89999 1.48240 1.06127 1.39030 1.32544 1.76605 1.21296 1.07242 1.04365 1.24143 0.82388 0.97659 0.96487 1.46011 1.08808 1.40031 1.33955 1.16550 0.83505 0.82309 0.82468 1.91235 1.55400 1.54050 1.39053 1.21747 0.79916 0.95789 1.01624 1.21978 1.01566 0.96586 0.97348 1.21710 0.93217 1.03462 0.97741 1.20447 0.98983 0.94677 0.93619 0.91475 0.92704 0.92357 0.95574 0.96228 0.77898 0.93418 0.92985 0.91385 0.90013 0.85712 0.86411 0.88910 0.90200 0.90363 0.89030 0.89619 0.90778 0.88110 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.20 37.16 0.34 -1.72 16 2 C 0.13 2.31 2.80 -67.93 -0.19 2.12 16 3 H 0.10 2.07 6.90 -51.93 -0.36 1.71 16 4 C 0.14 3.06 5.50 -4.04 -0.02 3.04 16 5 N -0.73 -19.96 5.43 -59.91 -0.33 -20.29 16 6 C -0.25 -7.39 9.99 -15.06 -0.15 -7.54 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 9 N -0.92 -30.40 13.06 55.49 0.72 -29.67 16 10 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 N -0.59 -10.44 2.24 -173.93 -0.39 -10.83 16 15 C 0.08 1.06 9.30 59.85 0.56 1.61 16 16 C 0.50 9.97 7.45 -10.99 -0.08 9.89 16 17 O -0.53 -12.69 15.76 5.56 0.09 -12.60 16 18 C 0.15 2.46 5.42 -5.19 -0.03 2.43 16 19 N -0.44 -8.00 3.12 -66.40 -0.21 -8.21 16 20 N -0.27 -4.28 12.51 33.13 0.41 -3.86 16 21 C 0.27 3.52 7.73 -153.76 -1.19 2.34 16 22 N -0.56 -8.39 3.13 -117.55 -0.37 -8.76 16 23 C 0.65 13.14 8.64 -87.05 -0.75 12.39 16 24 O -0.53 -13.11 17.83 5.08 0.09 -13.02 16 25 C 0.13 1.42 6.88 -3.77 -0.03 1.40 16 26 C -0.14 -0.92 5.94 -26.46 -0.16 -1.07 16 27 C -0.12 -0.64 5.96 -26.37 -0.16 -0.79 16 28 C -0.04 -0.27 6.32 -27.44 -0.17 -0.44 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.40 6.88 -51.93 -0.36 0.05 16 34 H 0.39 11.71 7.06 -40.82 -0.29 11.42 16 35 H 0.26 8.27 8.31 -40.82 -0.34 7.93 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 38 H 0.08 1.17 6.53 -51.93 -0.34 0.83 16 39 H 0.13 2.07 7.38 -51.93 -0.38 1.69 16 40 H 0.12 1.43 8.11 -51.93 -0.42 1.01 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.38 8.11 -51.93 -0.42 -0.05 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -42.72 391.31 -8.72 -51.44 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.49 Total: 8.00 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: -2.13 Total: 23.25 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -0.15 Total: -81.63 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.18 Total: -25.62 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -42.72 -8.72 -51.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698862663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -42.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds