Wall clock time and date at job start Tue Mar 31 2020 20:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.36934 * 120.00312 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00307 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00086 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47202 * 60.00005 * 10 8 6 12 12 H 1.48508 * 109.47273 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47471 * 299.99780 * 10 8 6 14 14 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 15 15 C 1.46505 * 120.00078 * 299.99998 * 14 2 1 16 16 C 1.34771 * 120.00141 * 119.99854 * 14 2 1 17 17 O 1.21281 * 120.00208 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00070 * 180.02562 * 16 14 2 19 19 N 1.46501 * 109.47232 * 179.97438 * 18 16 14 20 20 N 1.40310 * 126.32630 * 269.69308 * 19 18 16 21 21 C 1.28873 * 108.12266 * 180.02562 * 20 19 18 22 22 N 1.38010 * 108.81255 * 1.11971 * 21 20 19 23 23 C 1.34301 * 108.33303 * 358.31878 * 22 21 20 24 24 O 1.21817 * 126.32299 * 181.52929 * 23 22 21 25 25 C 1.46717 * 124.16129 * 177.45337 * 22 21 20 26 26 C 1.53294 * 108.65382 * 19.61064 * 25 22 21 27 27 C 1.53227 * 109.36440 * 308.14266 * 26 25 22 28 28 C 1.51117 * 127.47130 * 181.73949 * 21 20 19 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 33 33 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 34 34 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 35 35 H 0.96994 * 120.00308 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47130 * 89.99894 * 15 14 2 37 37 H 1.08997 * 109.47212 * 209.99646 * 15 14 2 38 38 H 1.09003 * 109.46772 * 330.00259 * 15 14 2 39 39 H 1.08999 * 109.47401 * 300.00043 * 18 16 14 40 40 H 1.09002 * 109.47014 * 60.00321 * 18 16 14 41 41 H 1.09004 * 109.60669 * 139.35877 * 25 22 21 42 42 H 1.09000 * 109.60867 * 259.69246 * 25 22 21 43 43 H 1.08997 * 109.48737 * 68.11077 * 26 25 22 44 44 H 1.08997 * 109.49074 * 188.17194 * 26 25 22 45 45 H 1.09002 * 109.54084 * 190.52959 * 27 26 25 46 46 H 1.08994 * 109.54861 * 310.80350 * 27 26 25 47 47 H 1.08994 * 109.75140 * 78.00090 * 28 21 20 48 48 H 1.09003 * 109.78848 * 317.29397 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4389 2.2066 7 1 3.6468 -1.8448 3.0511 8 6 5.5673 -1.5381 2.1512 9 7 6.2220 -1.0430 1.1222 10 14 6.5001 -2.3729 3.5376 11 1 6.0443 -3.7806 3.6636 12 1 7.9550 -2.3479 3.2409 13 1 6.2428 -1.6535 4.8110 14 7 2.0184 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4281 16 6 2.7932 -0.0357 -2.0834 17 8 3.0858 1.1256 -1.8917 18 6 3.2950 -0.7459 -3.3141 19 7 4.1084 0.1750 -4.1119 20 7 3.6476 1.0195 -5.1333 21 6 4.6560 1.6740 -5.5977 22 7 5.7941 1.2716 -4.9288 23 6 5.4416 0.3648 -4.0030 24 8 6.1864 -0.1851 -3.2112 25 6 7.1433 1.7640 -5.2284 26 6 7.0237 3.0841 -5.9984 27 6 6.0853 2.8915 -7.1943 28 6 4.6482 2.7271 -6.6814 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6055 -1.7199 1.2951 34 1 3.9825 -0.4622 0.4318 35 1 7.1886 -1.1126 1.0833 36 1 0.7375 -2.1444 -1.9994 37 1 2.4628 -2.5819 -1.9865 38 1 1.5295 -2.5969 -0.4708 39 1 3.9003 -1.6025 -3.0179 40 1 2.4469 -1.0880 -3.9073 41 1 7.6866 1.9311 -4.2983 42 1 7.6740 1.0305 -5.8353 43 1 6.6207 3.8538 -5.3402 44 1 8.0081 3.3882 -6.3539 45 1 6.1422 3.7630 -7.8465 46 1 6.3789 2.0000 -7.7484 47 1 4.2922 3.6730 -6.2733 48 1 3.9994 2.4112 -7.4984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698862663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:54 Heat of formation + Delta-G solvation = 0.157005 kcal Electronic energy + Delta-G solvation = -30699.300459 eV Core-core repulsion = 26597.834806 eV Total energy + Delta-G solvation = -4101.465653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.63094 -41.12373 -38.83910 -38.11393 -37.60839 -35.88744 -34.58768 -33.83666 -33.25296 -31.87379 -29.90610 -28.89978 -27.80812 -27.41330 -25.47023 -24.52099 -23.62414 -23.25453 -22.11237 -20.67653 -20.23759 -19.13779 -18.78376 -18.30056 -17.82071 -17.19194 -17.06547 -16.79948 -16.55015 -16.42451 -15.61697 -15.45629 -15.27580 -15.17466 -15.15317 -14.77556 -14.35152 -14.20076 -13.98504 -13.93502 -13.72008 -13.41620 -13.28075 -13.26311 -13.08400 -12.97783 -12.87839 -12.76919 -12.54386 -12.21702 -12.08458 -11.88388 -11.85027 -11.84001 -11.77394 -11.43101 -11.34212 -10.98589 -10.71460 -9.64868 -9.62388 -9.04162 -7.93721 -5.27082 0.58238 0.95575 1.39771 1.45121 1.46717 1.51845 1.54163 1.94257 2.14019 2.52492 3.22206 3.37208 3.40291 3.57919 3.74299 3.83056 3.83969 3.90875 3.98725 4.06955 4.24130 4.29270 4.31401 4.38579 4.42904 4.45330 4.56515 4.72346 4.74565 4.80861 4.82575 4.87647 4.89560 4.91431 4.97863 5.01893 5.06103 5.11851 5.17770 5.28407 5.35241 5.43248 5.58694 5.65777 6.21179 6.33007 6.56746 6.91246 7.08787 7.27827 8.05342 8.28090 9.27420 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003699 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.168398 B = 7567.754262 C = 9380.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.058 0.942 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.248 4.248 7 H 0.082 0.918 8 C -0.080 4.080 9 N -0.968 5.968 10 Si 0.978 3.022 11 H -0.270 1.270 12 H -0.301 1.301 13 H -0.276 1.276 14 N -0.592 5.592 15 C 0.070 3.930 16 C 0.493 3.507 17 O -0.583 6.583 18 C 0.149 3.851 19 N -0.445 5.445 20 N -0.296 5.296 21 C 0.284 3.716 22 N -0.554 5.554 23 C 0.629 3.371 24 O -0.595 6.595 25 C 0.116 3.884 26 C -0.129 4.129 27 C -0.115 4.115 28 C -0.037 4.037 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.367 0.633 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.166 0.834 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 5.688 -22.930 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.026 3.974 3 H 0.077 0.923 4 C 0.014 3.986 5 N -0.387 5.387 6 C -0.380 4.380 7 H 0.100 0.900 8 C -0.272 4.272 9 N -0.618 5.618 10 Si 0.806 3.194 11 H -0.195 1.195 12 H -0.228 1.228 13 H -0.202 1.202 14 N -0.325 5.325 15 C -0.071 4.071 16 C 0.280 3.720 17 O -0.463 6.463 18 C 0.024 3.976 19 N -0.264 5.264 20 N -0.118 5.118 21 C 0.006 3.994 22 N -0.283 5.283 23 C 0.327 3.673 24 O -0.471 6.471 25 C -0.004 4.004 26 C -0.166 4.166 27 C -0.153 4.153 28 C -0.077 4.077 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.199 0.801 35 H 0.054 0.946 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.183 0.817 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.099 0.901 47 H 0.134 0.866 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.156 5.570 -22.097 24.558 hybrid contribution 2.014 -0.388 1.450 2.512 sum -7.141 5.183 -20.646 22.453 Atomic orbital electron populations 1.21936 0.90599 1.03969 1.03100 1.21288 0.96418 0.95985 0.83680 0.92341 1.21239 0.83989 0.98095 0.95254 1.42562 1.02124 1.69862 1.24135 1.19626 0.89900 1.28740 0.99738 0.90005 1.25734 0.97729 1.03123 1.00623 1.69951 1.06721 1.52510 1.32579 0.85152 0.76816 0.78806 0.78596 1.19522 1.22772 1.20166 1.47775 1.49666 1.13661 1.21381 1.22081 1.02170 0.79245 1.03621 1.21338 0.77935 0.87059 0.85670 1.90659 1.58565 1.19532 1.77571 1.21390 0.97350 0.89303 0.89515 1.48435 1.05650 1.39340 1.32963 1.76630 1.22168 1.08388 1.04582 1.25477 0.80729 0.97073 0.96144 1.46274 1.10915 1.38475 1.32647 1.17029 0.84060 0.83143 0.83021 1.91155 1.57152 1.56824 1.42011 1.22187 0.78067 0.98785 1.01394 1.22033 1.03949 0.93278 0.97366 1.21761 0.90917 1.05484 0.97101 1.20915 1.01310 0.93067 0.92380 0.90236 0.91759 0.89898 0.95295 0.93926 0.80145 0.94573 0.88249 0.90933 0.90575 0.86553 0.81697 0.91583 0.88600 0.91169 0.85943 0.85847 0.90147 0.86638 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.20 71.98 0.66 -2.72 16 2 C 0.13 4.76 2.80 44.99 0.13 4.88 16 3 H 0.06 2.61 6.90 -2.39 -0.02 2.59 16 4 C 0.14 5.98 5.50 86.38 0.48 6.46 16 5 N -0.74 -42.04 5.43 -343.45 -1.87 -43.90 16 6 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 7 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 8 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 9 N -0.97 -67.28 13.06 21.65 0.28 -67.00 16 10 Si 0.98 49.85 29.55 68.60 2.03 51.87 16 11 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 N -0.59 -20.88 2.24 -822.57 -1.85 -22.73 16 15 C 0.07 1.78 9.30 127.77 1.19 2.97 16 16 C 0.49 20.39 7.45 87.66 0.65 21.04 16 17 O -0.58 -30.11 15.76 -3.03 -0.05 -30.16 16 18 C 0.15 5.12 5.42 85.63 0.46 5.58 16 19 N -0.45 -17.03 3.12 -481.99 -1.50 -18.54 16 20 N -0.30 -9.29 12.51 -49.11 -0.61 -9.90 16 21 C 0.28 7.19 7.73 137.75 1.06 8.26 16 22 N -0.55 -17.43 3.13 -644.26 -2.02 -19.45 16 23 C 0.63 27.30 8.64 179.10 1.55 28.85 16 24 O -0.60 -32.60 17.83 -4.72 -0.08 -32.69 16 25 C 0.12 2.61 6.88 86.44 0.59 3.20 16 26 C -0.13 -1.46 5.94 30.77 0.18 -1.28 16 27 C -0.11 -0.74 5.96 30.83 0.18 -0.56 16 28 C -0.04 -0.42 6.32 30.14 0.19 -0.23 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.65 7.67 -2.39 -0.02 1.63 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.65 6.88 -2.38 -0.02 1.63 16 34 H 0.37 23.50 7.06 -92.71 -0.65 22.84 16 35 H 0.25 16.82 8.31 -92.71 -0.77 16.05 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.78 6.44 -2.39 -0.02 1.76 16 38 H 0.08 2.03 6.53 -2.39 -0.02 2.01 16 39 H 0.12 4.14 7.38 -2.39 -0.02 4.12 16 40 H 0.17 3.84 8.11 -2.39 -0.02 3.82 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 44 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.08 0.49 8.11 -2.39 -0.02 0.47 16 47 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -103.21 391.31 3.29 -99.93 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.32 Total: 34.77 kcal Atomic # 6 Polarization: 49.14 SS G_CDS: 8.64 Total: 57.78 kcal Atomic # 7 Polarization: -173.95 SS G_CDS: -7.57 Total: -181.51 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -0.13 Total: -62.84 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.87 kcal Total: -103.21 3.29 -99.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698862663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.082 kcal (2) G-P(sol) polarization free energy of solvation -103.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds