Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46890 * 2 1 4 4 N 1.28444 * 125.19372 * 265.57331 * 3 2 1 5 5 C 1.30856 * 110.93150 * 180.16230 * 4 3 2 6 6 C 1.39675 * 107.86022 * 359.61342 * 5 4 3 7 7 C 1.36605 * 125.19186 * 85.31063 * 3 2 1 8 8 C 1.47159 * 126.88245 * 359.97438 * 7 3 2 9 9 O 1.21636 * 120.00118 * 353.16384 * 8 7 3 10 10 N 1.34777 * 120.00074 * 173.16646 * 8 7 3 11 11 C 1.46499 * 119.99653 * 354.47115 * 10 8 7 12 12 C 1.46496 * 120.00019 * 174.47599 * 10 8 7 13 13 C 1.53005 * 109.47115 * 89.99888 * 12 10 8 14 14 N 1.46903 * 109.46730 * 180.02562 * 13 12 10 15 15 C 1.46899 * 111.00482 * 66.04527 * 14 13 12 16 16 C 1.46905 * 110.99615 * 189.99814 * 14 13 12 17 17 C 1.50708 * 109.47033 * 169.99893 * 16 14 13 18 18 O 1.21291 * 119.99848 * 0.02562 * 17 16 14 19 19 N 1.34772 * 120.00152 * 179.97438 * 17 16 14 20 20 C 1.37094 * 120.00199 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99715 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99849 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00097 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47148 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46950 * 119.99923 * 24 22 20 27 27 H 1.48496 * 109.47103 * 240.00129 * 24 22 20 28 28 H 1.08991 * 109.47134 * 64.90443 * 1 2 3 29 29 H 1.09002 * 109.47175 * 184.90766 * 1 2 3 30 30 H 1.08998 * 109.47068 * 304.90295 * 1 2 3 31 31 H 1.08993 * 109.47322 * 239.99842 * 2 1 3 32 32 H 1.09002 * 109.47577 * 119.99588 * 2 1 3 33 33 H 1.07999 * 126.07028 * 179.87830 * 5 4 3 34 34 H 1.08002 * 127.31923 * 180.24711 * 6 5 4 35 35 H 1.08999 * 109.46874 * 84.19394 * 11 10 8 36 36 H 1.09002 * 109.46730 * 204.18813 * 11 10 8 37 37 H 1.08999 * 109.47497 * 324.18691 * 11 10 8 38 38 H 1.09000 * 109.46977 * 209.99798 * 12 10 8 39 39 H 1.08994 * 109.47423 * 329.99579 * 12 10 8 40 40 H 1.08997 * 109.46688 * 299.99583 * 13 12 10 41 41 H 1.08995 * 109.47338 * 60.00109 * 13 12 10 42 42 H 1.08999 * 109.47042 * 59.99634 * 15 14 13 43 43 H 1.08998 * 109.47373 * 179.97438 * 15 14 13 44 44 H 1.08998 * 109.46771 * 300.00254 * 15 14 13 45 45 H 1.08998 * 109.47084 * 289.99773 * 16 14 13 46 46 H 1.08998 * 109.47293 * 50.00139 * 16 14 13 47 47 H 0.97006 * 119.99754 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99785 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3414 2.0522 -1.0465 5 6 2.7439 3.2550 -0.7248 6 6 2.6655 3.3757 0.6645 7 6 2.1946 2.1539 1.1126 8 6 1.9352 1.7652 2.5081 9 8 1.4031 0.6993 2.7536 10 7 2.2872 2.5902 3.5140 11 6 3.0357 3.8166 3.2276 12 6 1.9215 2.2606 4.8937 13 6 3.0342 1.4257 5.5308 14 7 2.6670 1.0947 6.9141 15 6 1.4984 0.2054 6.9503 16 6 3.8027 0.5012 7.6325 17 6 3.4727 0.4022 9.0997 18 8 2.3971 0.7877 9.5067 19 7 4.3723 -0.1156 9.9593 20 6 4.0723 -0.2051 11.2940 21 1 3.1149 0.1389 11.6565 22 6 5.0001 -0.7385 12.1803 23 7 6.1648 -1.1576 11.7391 24 14 4.5916 -0.8599 13.9991 25 1 3.2270 -0.3246 14.2367 26 1 4.6462 -2.2815 14.4249 27 1 5.5766 -0.0706 14.7814 28 1 -0.3633 0.4358 -0.9306 29 1 -0.3633 -1.0239 0.0879 30 1 -0.3633 0.5880 0.8428 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0736 4.0202 -1.4120 34 1 2.9184 4.2391 1.2620 35 1 2.3418 4.6079 2.9441 36 1 3.5895 4.1200 4.1161 37 1 3.7328 3.6342 2.4097 38 1 1.7858 3.1801 5.4632 39 1 0.9923 1.6908 4.8971 40 1 3.1697 0.5063 4.9613 41 1 3.9633 1.9956 5.5275 42 1 1.7281 -0.7183 6.4192 43 1 1.2483 -0.0241 7.9861 44 1 0.6518 0.6983 6.4724 45 1 4.0023 -0.4947 7.2370 46 1 4.6843 1.1283 7.4999 47 1 5.2323 -0.4242 9.6337 48 1 6.8126 -1.5296 12.3579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698985127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = 41.242472 kcal Electronic energy + Delta-G solvation = -29074.449348 eV Core-core repulsion = 24974.765294 eV Total energy + Delta-G solvation = -4099.684054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91100 -39.94573 -38.57059 -36.83219 -35.86197 -34.61864 -33.84551 -31.86773 -31.23049 -30.10455 -29.51196 -27.68805 -27.34230 -25.54143 -24.47434 -24.07171 -22.57279 -21.94838 -20.82202 -19.64605 -19.13469 -17.83645 -17.64005 -16.91942 -16.47306 -16.31197 -15.94995 -15.31448 -15.25836 -15.02953 -14.70484 -14.57587 -14.37301 -14.15677 -13.94289 -13.50751 -13.47084 -13.31189 -13.15502 -12.98666 -12.79720 -12.44821 -12.17057 -12.09033 -11.99771 -11.60772 -11.50758 -11.31341 -11.22797 -10.98405 -10.93130 -10.77818 -10.33713 -10.31236 -10.21761 -9.55584 -9.47899 -9.34917 -9.04880 -8.42290 -7.97241 -7.85448 -6.41036 -3.81660 0.94356 1.99294 2.29683 2.71164 2.88067 3.16704 3.27218 3.34490 3.91565 3.98275 4.09612 4.17623 4.29567 4.63031 4.66529 4.76240 4.82773 4.88916 4.91273 4.98335 5.09849 5.15242 5.19988 5.26624 5.27714 5.34861 5.38315 5.47137 5.48405 5.68025 5.72312 5.74329 5.79751 5.86734 5.96877 6.05921 6.12211 6.20704 6.29738 6.40709 6.59660 6.94785 7.26040 7.37651 7.56211 7.67583 7.81614 8.07596 8.62831 9.19139 9.55573 10.07427 10.76837 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.001892 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.050282 B =14794.882918 C =15098.021145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.254 5.254 4 N -0.278 5.278 5 C -0.007 4.007 6 C -0.206 4.206 7 C -0.034 4.034 8 C 0.586 3.414 9 O -0.534 6.534 10 N -0.597 5.597 11 C 0.058 3.942 12 C 0.122 3.878 13 C 0.041 3.959 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.016 0.984 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 8.054 -25.244 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.042 5.042 4 N -0.111 5.111 5 C -0.183 4.183 6 C -0.235 4.235 7 C -0.163 4.163 8 C 0.373 3.627 9 O -0.411 6.411 10 N -0.330 5.330 11 C -0.084 4.084 12 C 0.000 4.000 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.203 0.797 34 H 0.195 0.805 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.839 7.230 -25.377 27.025 hybrid contribution 0.980 -0.404 0.885 1.381 sum -4.858 6.826 -24.492 25.885 Atomic orbital electron populations 1.22071 0.93222 1.03792 1.02930 1.22127 0.96389 0.76410 1.05473 1.45902 1.44104 1.12346 1.01882 1.73204 1.16872 1.07173 1.13853 1.23641 1.04812 0.94634 0.95219 1.23046 1.06597 0.98083 0.95762 1.21390 1.11238 0.93801 0.89855 1.16976 0.78838 0.83803 0.83056 1.90820 1.43689 1.22109 1.84496 1.47471 1.55640 1.23095 1.06791 1.22536 0.96382 0.85998 1.03492 1.21569 0.98621 1.01087 0.78758 1.22434 0.98246 0.98924 0.89245 1.61530 1.05630 1.45268 1.11587 1.22577 0.92371 0.93367 1.04351 1.21857 0.93730 0.98391 0.94453 1.19719 0.86247 0.84124 0.86867 1.90483 1.24209 1.52842 1.78557 1.41876 1.16313 1.54525 1.07480 1.19747 1.02602 1.38206 0.82112 0.87840 1.25266 0.95138 0.97027 1.00632 1.69622 1.06631 1.42055 1.36065 0.85800 0.78711 0.77811 0.82023 1.19213 1.20813 1.20770 0.92085 0.89989 0.91311 0.88286 0.87152 0.79701 0.80542 0.91644 0.90075 0.89492 0.88882 0.89367 0.94631 0.90865 0.96583 0.88572 0.92070 0.93476 0.89466 0.77514 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.14 37.16 0.38 -0.94 16 2 C 0.12 1.02 6.32 -4.04 -0.03 0.99 16 3 N -0.25 -2.68 3.35 -57.14 -0.19 -2.88 16 4 N -0.28 -2.93 11.90 30.59 0.36 -2.57 16 5 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 6 C -0.21 -1.63 8.87 -38.99 -0.35 -1.98 16 7 C -0.03 -0.36 6.79 -82.06 -0.56 -0.92 16 8 C 0.59 6.84 7.63 -12.64 -0.10 6.74 16 9 O -0.53 -7.57 13.99 5.25 0.07 -7.50 16 10 N -0.60 -5.88 2.87 -182.95 -0.53 -6.40 16 11 C 0.06 0.35 8.67 59.85 0.52 0.87 16 12 C 0.12 1.39 5.26 -4.04 -0.02 1.37 16 13 C 0.04 0.54 5.28 -3.82 -0.02 0.52 16 14 N -0.52 -8.63 4.50 -244.36 -1.10 -9.73 16 15 C 0.02 0.36 8.96 60.06 0.54 0.90 16 16 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 17 C 0.45 10.50 7.48 -10.98 -0.08 10.42 16 18 O -0.58 -15.43 13.91 5.55 0.08 -15.36 16 19 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.06 6.76 -51.93 -0.35 0.71 16 33 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.18 0.86 4.60 -52.49 -0.24 0.62 16 35 H 0.07 0.30 7.43 -51.93 -0.39 -0.09 16 36 H 0.08 0.43 8.03 -51.93 -0.42 0.02 16 37 H 0.09 0.46 5.27 -51.93 -0.27 0.19 16 38 H 0.09 0.97 8.07 -51.93 -0.42 0.56 16 39 H 0.09 1.13 5.91 -51.93 -0.31 0.83 16 40 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 44 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 46 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -34.14 389.93 -7.02 -41.17 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.05 Total: 9.02 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.19 Total: 10.58 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.79 Total: -59.83 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.15 Total: -22.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.14 -7.02 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.408 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds